1YPT - Header Asymmetric Unit

HEADER HYDROLASE 16-SEP-94 1YPT

TITLE CRYSTAL STRUCTURE OF YERSINIA PROTEIN TYROSINE PHOSPHATASE TITLE 2 AT 2.5 ANGSTROMS AND THE COMPLEX WITH TUNGSTATE

COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN-TYROSINE PHOSPHATASE YERSINIA (CATALYTIC COMPND 3 DOMAIN); COMPND 4 CHAIN: A, B; COMPND 5 EC: 3.1.3.48; COMPND 6 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA ENTEROCOLITICA; SOURCE 3 ORGANISM_TAXID: 630; SOURCE 4 GENE: YOP51; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PT7-7 GENE: YOP51; SOURCE 7 EXPRESSION_SYSTEM_GENE: YOP51

KEYWDS HYDROLASE, PROTEIN TYROSINE PHOSPHATASE

EXPDTA X-RAY DIFFRACTION

AUTHOR J.A.STUCKEY,H.L.SCHUBERT,E.B.FAUMAN,Z.-Y.ZHANG,J.E.DIXON, AUTHOR 2 M.A.SAPER

REVDAT 3 24-FEB-09 1YPT 1 VERSN REVDAT 2 01-APR-03 1YPT 1 JRNL REVDAT 1 20-DEC-94 1YPT 0

JRNL AUTH J.A.STUCKEY,H.L.SCHUBERT,E.B.FAUMAN,Z.Y.ZHANG, JRNL AUTH 2 J.E.DIXON,M.A.SAPER JRNL TITL CRYSTAL STRUCTURE OF YERSINIA PROTEIN TYROSINE JRNL TITL 2 PHOSPHATASE AT 2.5 A AND THE COMPLEX WITH JRNL TITL 3 TUNGSTATE. JRNL REF NATURE V. 370 571 1994 JRNL REFN ISSN 0028-0836 JRNL PMID 8052312 JRNL DOI 10.1038/370571A0

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Z.-Y.ZHANG,J.C.CLEMENS,H.L.SCHUBERT,J.A.STUCKEY, REMARK 1 AUTH 2 M.W.F.FISCHER,D.M.HUME,M.A.SAPER,J.E.DIXON REMARK 1 TITL EXPRESSION, PURIFICATION, AND PHYSICOCHEMICAL REMARK 1 TITL 2 CHARACTERIZATION OF A RECOMBINANT YERSINIA PROTEIN REMARK 1 TITL 3 TYROSINE PHOSPHATASE REMARK 1 REF J.BIOL.CHEM. V. 267 23759 1992 REMARK 1 REFN ISSN 0021-9258

REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.0 REMARK 3 NUMBER OF REFLECTIONS : 17095 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4290 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 65 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 2.93 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.81 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.25 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1YPT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19476 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE CATALYTIC DOMAIN (RESIDUES 163 REMARK 280 - 468) OF YOP51 WAS CRYSTALLIZED AT 22 DEGREES CELSIUS, IN A REMARK 280 SOLUTION OF 10 - 16% POLYETHYLENE GLYCOL, 5% 2-METHYL-2,4- REMARK 280 PENTANEDIOL, 0.1% B-MERCAPTOETHANOL, AND 1MM IMIDAZOLE, PH REMARK 280 7.2. SOURCE ONLY THE CATALYTIC DOMAIN (RESIDUES 163 - 468) WAS REMARK 280 EXPRESSED FOR THIS PARTICULAR EXPERIMENT. THE 235 CYS TO ARG REMARK 280 MUTATION WAS UNINTENTIONAL AND MOST LIKELY THE RESULT OF USING REMARK 280 PCR TO CONSTRUCT THE PLASMID (SEE REFERENCE REMARK 1).

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.65333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.82667 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MTRIX REMARK 300 THE TRANSFORMATIONS PRESENTED ON MTRIX RECORDS BELOW REMARK 300 DESCRIBE NON-CRYSTALLOGRAPHIC RELATIONSHIPS AMONG THE REMARK 300 VARIOUS DOMAINS IN THIS ENTRY. APPLYING THE APPROPRIATE REMARK 300 MTRIX TRANSFORMATION TO THE RESIDUES LISTED FIRST WILL REMARK 300 YIELD APPROXIMATE COORDINATES FOR THE RESIDUES LISTED REMARK 300 SECOND. REMARK 300 REMARK 300 APPLIED TO TRANSFORMED TO REMARK 300 MTRIX CHAIN RESIDUES CHAIN RESIDUES RMSD REMARK 300 M1 A 191 - A 468 B 191 - B 468 .223 REMARK 300 REMARK 300 A 178.02 DEGREE ROTATION ABOUT THE X AXIS OF THE CRYSTAL REMARK 300 THAT RELATES MOLECULE A TO MOLECULE B. THE RMSD REMARK 300 (EXCLUDING 4 FLEXIBLE LOOPS) BETWEEN MOLECULE A AND REMARK 300 MOLECULE B IS 0.196. THE RMSD USING ALL ATOMS IS 0.523.

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 164 REMARK 465 GLU A 165 REMARK 465 ARG A 166 REMARK 465 PRO A 167 REMARK 465 HIS A 168 REMARK 465 THR A 169 REMARK 465 SER A 170 REMARK 465 GLY A 171 REMARK 465 HIS A 172 REMARK 465 HIS A 173 REMARK 465 GLY A 174 REMARK 465 ALA A 175 REMARK 465 GLY A 176 REMARK 465 GLU A 177 REMARK 465 ALA A 178 REMARK 465 ARG A 179 REMARK 465 ALA A 180 REMARK 465 THR A 181 REMARK 465 ALA A 182 REMARK 465 PRO A 183 REMARK 465 SER A 184 REMARK 465 THR A 185 REMARK 465 VAL A 186 REMARK 465 SER A 187 REMARK 465 PRO A 188 REMARK 465 TYR A 189 REMARK 465 GLY A 190 REMARK 465 ARG B 164 REMARK 465 GLU B 165 REMARK 465 ARG B 166 REMARK 465 PRO B 167 REMARK 465 HIS B 168 REMARK 465 THR B 169 REMARK 465 SER B 170 REMARK 465 GLY B 171 REMARK 465 HIS B 172 REMARK 465 HIS B 173 REMARK 465 GLY B 174 REMARK 465 ALA B 175 REMARK 465 GLY B 176 REMARK 465 GLU B 177 REMARK 465 ALA B 178 REMARK 465 ARG B 179 REMARK 465 ALA B 180 REMARK 465 THR B 181 REMARK 465 ALA B 182 REMARK 465 PRO B 183 REMARK 465 SER B 184 REMARK 465 THR B 185 REMARK 465 VAL B 186 REMARK 465 SER B 187 REMARK 465 PRO B 188

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 270 NE2 HIS A 270 CD2 -0.077 REMARK 500 HIS A 350 NE2 HIS A 350 CD2 -0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 205 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 255 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 272 NH1 - CZ - NH2 ANGL. DEV. = -8.3 DEGREES REMARK 500 ARG A 272 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 TRP A 354 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP A 354 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 380 NE - CZ - NH1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG A 380 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 398 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 MET A 432 CG - SD - CE ANGL. DEV. = -10.8 DEGREES REMARK 500 ARG B 205 CB - CG - CD ANGL. DEV. = -17.0 DEGREES REMARK 500 ARG B 216 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 241 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 241 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 272 NH1 - CZ - NH2 ANGL. DEV. = -10.9 DEGREES REMARK 500 ARG B 272 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG B 272 NE - CZ - NH2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG B 295 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 303 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 TRP B 354 CD1 - CG - CD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 TRP B 354 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG B 380 NE - CZ - NH1 ANGL. DEV. = 8.3 DEGREES REMARK 500 ARG B 380 NE - CZ - NH2 ANGL. DEV. = -6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 319 165.30 176.52 REMARK 500 GLN A 357 -61.88 -105.69 REMARK 500 CYS A 403 -122.97 -110.28 REMARK 500 ARG A 440 -63.53 -132.53 REMARK 500 VAL A 445 79.16 77.96 REMARK 500 GLN B 357 -63.12 -99.91 REMARK 500 CYS B 403 -120.45 -112.30 REMARK 500 ARG B 440 -73.65 -136.47 REMARK 500 VAL B 445 89.12 77.15 REMARK 500 REMARK 500 REMARK: NULL

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: APL REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: THE PHOSPHATE BINDING LOOP WHICH IS BELIEVED REMARK 800 TO BE STRUCTURALLY CONSERVED IN ALL PROTEIN TYROSINE REMARK 800 PHOSPHATASES REMARK 800 SITE_IDENTIFIER: BPL REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: THE PHOSPHATE BINDING LOOP WHICH IS BELIEVED REMARK 800 TO BE STRUCTURALLY CONSERVED IN ALL PROTEIN TYROSINE REMARK 800 PHOSPHATASES REMARK 800 SITE_IDENTIFIER: WPD REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: THE FLEXIBLE LOOP FROM MOLECULE B CONTAINING REMARK 800 THE PUTATIVE GENERAL ACID, ASP 356, THAT FOLDS OVER THE ACTIVE REMARK 800 SITE AND SEQUESTERS THE TUNGSTATE ANION IN THE TUNGSTATE-BOUND REMARK 800 STRUCTURE.

DBREF 1YPT A 164 468 UNP P15273 YOPH_YEREN 164 468 DBREF 1YPT B 164 468 UNP P15273 YOPH_YEREN 164 468

SEQADV 1YPT ARG A 235 UNP P15273 CYS 235 CONFLICT SEQADV 1YPT ARG B 235 UNP P15273 CYS 235 CONFLICT

SEQRES 1 A 305 ARG GLU ARG PRO HIS THR SER GLY HIS HIS GLY ALA GLY SEQRES 2 A 305 GLU ALA ARG ALA THR ALA PRO SER THR VAL SER PRO TYR SEQRES 3 A 305 GLY PRO GLU ALA ARG ALA GLU LEU SER SER ARG LEU THR SEQRES 4 A 305 THR LEU ARG ASN THR LEU ALA PRO ALA THR ASN ASP PRO SEQRES 5 A 305 ARG TYR LEU GLN ALA CYS GLY GLY GLU LYS LEU ASN ARG SEQRES 6 A 305 PHE ARG ASP ILE GLN CYS ARG ARG GLN THR ALA VAL ARG SEQRES 7 A 305 ALA ASP LEU ASN ALA ASN TYR ILE GLN VAL GLY ASN THR SEQRES 8 A 305 ARG THR ILE ALA CYS GLN TYR PRO LEU GLN SER GLN LEU SEQRES 9 A 305 GLU SER HIS PHE ARG MET LEU ALA GLU ASN ARG THR PRO SEQRES 10 A 305 VAL LEU ALA VAL LEU ALA SER SER SER GLU ILE ALA ASN SEQRES 11 A 305 GLN ARG PHE GLY MET PRO ASP TYR PHE ARG GLN SER GLY SEQRES 12 A 305 THR TYR GLY SER ILE THR VAL GLU SER LYS MET THR GLN SEQRES 13 A 305 GLN VAL GLY LEU GLY ASP GLY ILE MET ALA ASP MET TYR SEQRES 14 A 305 THR LEU THR ILE ARG GLU ALA GLY GLN LYS THR ILE SER SEQRES 15 A 305 VAL PRO VAL VAL HIS VAL GLY ASN TRP PRO ASP GLN THR SEQRES 16 A 305 ALA VAL SER SER GLU VAL THR LYS ALA LEU ALA SER LEU SEQRES 17 A 305 VAL ASP GLN THR ALA GLU THR LYS ARG ASN MET TYR GLU SEQRES 18 A 305 SER LYS GLY SER SER ALA VAL ALA ASP ASP SER LYS LEU SEQRES 19 A 305 ARG PRO VAL ILE HIS CYS ARG ALA GLY VAL GLY ARG THR SEQRES 20 A 305 ALA GLN LEU ILE GLY ALA MET CYS MET ASN ASP SER ARG SEQRES 21 A 305 ASN SER GLN LEU SER VAL GLU ASP MET VAL SER GLN MET SEQRES 22 A 305 ARG VAL GLN ARG ASN GLY ILE MET VAL GLN LYS ASP GLU SEQRES 23 A 305 GLN LEU ASP VAL LEU ILE LYS LEU ALA GLU GLY GLN GLY SEQRES 24 A 305 ARG PRO LEU LEU ASN SER SEQRES 1 B 305 ARG GLU ARG PRO HIS THR SER GLY HIS HIS GLY ALA GLY SEQRES 2 B 305 GLU ALA ARG ALA THR ALA PRO SER THR VAL SER PRO TYR SEQRES 3 B 305 GLY PRO GLU ALA ARG ALA GLU LEU SER SER ARG LEU THR SEQRES 4 B 305 THR LEU ARG ASN THR LEU ALA PRO ALA THR ASN ASP PRO SEQRES 5 B 305 ARG TYR LEU GLN ALA CYS GLY GLY GLU LYS LEU ASN ARG SEQRES 6 B 305 PHE ARG ASP ILE GLN CYS ARG ARG GLN THR ALA VAL ARG SEQRES 7 B 305 ALA ASP LEU ASN ALA ASN TYR ILE GLN VAL GLY ASN THR SEQRES 8 B 305 ARG THR ILE ALA CYS GLN TYR PRO LEU GLN SER GLN LEU SEQRES 9 B 305 GLU SER HIS PHE ARG MET LEU ALA GLU ASN ARG THR PRO SEQRES 10 B 305 VAL LEU ALA VAL LEU ALA SER SER SER GLU ILE ALA ASN SEQRES 11 B 305 GLN ARG PHE GLY MET PRO ASP TYR PHE ARG GLN SER GLY SEQRES 12 B 305 THR TYR GLY SER ILE THR VAL GLU SER LYS MET THR GLN SEQRES 13 B 305 GLN VAL GLY LEU GLY ASP GLY ILE MET ALA ASP MET TYR SEQRES 14 B 305 THR LEU THR ILE ARG GLU ALA GLY GLN LYS THR ILE SER SEQRES 15 B 305 VAL PRO VAL VAL HIS VAL GLY ASN TRP PRO ASP GLN THR SEQRES 16 B 305 ALA VAL SER SER GLU VAL THR LYS ALA LEU ALA SER LEU SEQRES 17 B 305 VAL ASP GLN THR ALA GLU THR LYS ARG ASN MET TYR GLU SEQRES 18 B 305 SER LYS GLY SER SER ALA VAL ALA ASP ASP SER LYS LEU SEQRES 19 B 305 ARG PRO VAL ILE HIS CYS ARG ALA GLY VAL GLY ARG THR SEQRES 20 B 305 ALA GLN LEU ILE GLY ALA MET CYS MET ASN ASP SER ARG SEQRES 21 B 305 ASN SER GLN LEU SER VAL GLU ASP MET VAL SER GLN MET SEQRES 22 B 305 ARG VAL GLN ARG ASN GLY ILE MET VAL GLN LYS ASP GLU SEQRES 23 B 305 GLN LEU ASP VAL LEU ILE LYS LEU ALA GLU GLY GLN GLY SEQRES 24 B 305 ARG PRO LEU LEU ASN SER

FORMUL 3 HOH *65(H2 O)

HELIX 1 1 GLU A 192 LEU A 208 1 17 HELIX 2 2 GLN A 264 GLU A 276 5 13 HELIX 3 3 SER A 288 ALA A 292 1 5 HELIX 4 4 GLN A 294 PHE A 296 5 3 HELIX 5 5 SER A 362 SER A 385 1 24 HELIX 6 6 SER A 389 ALA A 392 5 4 HELIX 7 7 ARG A 409 ASN A 420 1 12 HELIX 8 8 SER A 422 ASN A 424 5 3 HELIX 9 9 VAL A 429 GLN A 439 1 11 HELIX 10 10 ASP A 448 GLN A 461 1 14 HELIX 11 11 PRO B 191 THR B 207 1 17 HELIX 12 12 GLN B 264 GLU B 276 5 13 HELIX 13 13 SER B 288 ALA B 292 1 5 HELIX 14 14 GLN B 294 PHE B 296 5 3 HELIX 15 15 SER B 362 LYS B 386 1 25 HELIX 16 16 SER B 389 ALA B 392 5 4 HELIX 17 17 ARG B 409 MET B 419 1 11 HELIX 18 18 SER B 422 ASN B 424 5 3 HELIX 19 19 VAL B 429 GLN B 439 1 11 HELIX 20 20 ASP B 448 GLN B 461 1 14

SHEET 1 A 8 ALA A 246 VAL A 251 0 SHEET 2 A 8 THR A 254 CYS A 259 -1 N ALA A 258 O ASN A 247 SHEET 3 A 8 PRO A 399 HIS A 402 1 N PRO A 399 O ILE A 257 SHEET 4 A 8 LEU A 282 VAL A 284 1 N ALA A 283 O VAL A 400 SHEET 5 A 8 ILE A 344 VAL A 351 1 N VAL A 349 O LEU A 282 SHEET 6 A 8 MET A 328 GLU A 338 -1 N ILE A 336 O ILE A 344 SHEET 7 A 8 ILE A 311 GLY A 322 -1 N VAL A 321 O ALA A 329 SHEET 8 A 8 GLY A 306 TYR A 308 -1 N TYR A 308 O ILE A 311 SHEET 1 B 8 ALA B 246 VAL B 251 0 SHEET 2 B 8 THR B 254 CYS B 259 -1 N ALA B 258 O ASN B 247 SHEET 3 B 8 PRO B 399 HIS B 402 1 N PRO B 399 O ILE B 257 SHEET 4 B 8 LEU B 282 VAL B 284 1 N ALA B 283 O VAL B 400 SHEET 5 B 8 ILE B 344 VAL B 351 1 N VAL B 349 O LEU B 282 SHEET 6 B 8 MET B 328 GLU B 338 -1 N ILE B 336 O ILE B 344 SHEET 7 B 8 ILE B 311 GLY B 322 -1 N VAL B 321 O ALA B 329 SHEET 8 B 8 GLY B 306 TYR B 308 -1 N TYR B 308 O ILE B 311

SITE 1 APL 9 HIS A 402 CYS A 403 ARG A 404 ALA A 405 SITE 2 APL 9 GLY A 406 VAL A 407 GLY A 408 ARG A 409 SITE 3 APL 9 THR A 410 SITE 1 BPL 9 HIS B 402 CYS B 403 ARG B 404 ALA B 405 SITE 2 BPL 9 GLY B 406 VAL B 407 GLY B 408 ARG B 409 SITE 3 BPL 9 THR B 410 SITE 1 WPD 11 HIS B 350 VAL B 351 GLY B 352 ASN B 353 SITE 2 WPD 11 TRP B 354 PRO B 355 ASP B 356 GLN B 357 SITE 3 WPD 11 THR B 358 ALA B 359 VAL B 360

CRYST1 71.530 71.530 107.480 90.00 90.00 120.00 P 32 6

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.013980 0.008071 0.000000 0.00000

SCALE2 0.000000 0.016143 0.000000 0.00000

SCALE3 0.000000 0.000000 0.009304 0.00000

MTRIX1 1 0.992200 0.091653 0.084490 -5.65200 1

MTRIX2 1 0.088672 -0.995321 0.038391 39.55800 1

MTRIX3 1 0.087614 -0.030600 -0.995684 93.75700 1