10 20 30 40 50 60 70 80 1YOP - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL BINDING PROTEIN 28-JAN-05 1YOP
TITLE THE SOLUTION STRUCTURE OF KTI11P
COMPND MOL_ID: 1; COMPND 2 MOLECULE: KTI11P; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)GOLD; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A+
KEYWDS ZINC FINGER, METAL BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR J.SUN,J.ZHANG,F.WU,C.XU,S.LI,W.ZHAO,Z.WU,J.WU,C.-Z.ZHOU, AUTHOR 2 Y.SHI
REVDAT 3 24-FEB-09 1YOP 1 VERSN REVDAT 2 05-JUL-05 1YOP 1 JRNL REVDAT 1 05-APR-05 1YOP 0
JRNL AUTH J.SUN,J.ZHANG,F.WU,C.XU,S.LI,W.ZHAO,Z.WU,J.WU, JRNL AUTH 2 C.Z.ZHOU,Y.SHI JRNL TITL SOLUTION STRUCTURE OF KTI11P FROM SACCHAROMYCES JRNL TITL 2 CEREVISIAE REVEALS A NOVEL ZINC-BINDING MODULE. JRNL REF BIOCHEMISTRY V. 44 8801 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 15952786 JRNL DOI 10.1021/BI0504714
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1YOP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-FEB-05. REMARK 100 THE RCSB ID CODE IS RCSB031757.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM TRIS BUFFER, 50MM NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 19 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 12 37.62 -96.70 REMARK 500 1 GLU A 18 -46.45 -141.95 REMARK 500 1 PRO A 25 99.35 -50.95 REMARK 500 1 ASP A 30 -168.24 -114.09 REMARK 500 1 GLU A 41 41.04 -90.96 REMARK 500 1 SER A 50 -59.53 -129.81 REMARK 500 1 GLU A 62 -62.52 -99.69 REMARK 500 1 GLU A 77 149.70 68.62 REMARK 500 2 THR A 4 172.67 60.40 REMARK 500 2 ASP A 12 37.29 -96.46 REMARK 500 2 GLN A 20 73.75 52.27 REMARK 500 2 SER A 50 -56.25 -128.45 REMARK 500 2 GLU A 62 -70.27 -99.15 REMARK 500 2 GLU A 77 -60.12 -167.11 REMARK 500 2 ALA A 80 75.27 57.76 REMARK 500 2 ALA A 81 -174.37 62.95 REMARK 500 2 ALA A 82 136.13 -170.26 REMARK 500 3 ASP A 12 36.89 -97.01 REMARK 500 3 ASN A 19 25.32 -143.17 REMARK 500 3 GLN A 20 72.25 53.35 REMARK 500 3 SER A 50 -57.67 -128.01 REMARK 500 3 GLU A 77 82.54 57.64 REMARK 500 3 ALA A 80 90.79 60.32 REMARK 500 3 ALA A 82 80.86 56.89 REMARK 500 4 ASP A 12 36.14 -95.09 REMARK 500 4 GLU A 18 82.99 -66.17 REMARK 500 4 GLN A 20 78.07 53.49 REMARK 500 4 ASP A 30 -165.20 -122.42 REMARK 500 4 SER A 52 36.40 72.96 REMARK 500 4 PRO A 78 85.37 -57.62 REMARK 500 5 SER A 3 80.25 -167.79 REMARK 500 5 THR A 4 -171.51 56.61 REMARK 500 5 ASP A 12 39.00 -98.52 REMARK 500 5 SER A 50 -57.19 -129.15 REMARK 500 5 HIS A 74 85.90 59.98 REMARK 500 5 ILE A 79 30.47 -151.04 REMARK 500 5 ALA A 81 159.00 67.22 REMARK 500 6 VAL A 2 43.58 -106.86 REMARK 500 6 SER A 3 82.71 56.05 REMARK 500 6 THR A 4 173.11 63.13 REMARK 500 6 GLU A 18 82.53 -69.03 REMARK 500 6 GLN A 20 77.54 54.14 REMARK 500 6 LYS A 44 -47.99 -149.37 REMARK 500 6 SER A 50 -55.72 -128.71 REMARK 500 6 PRO A 78 95.69 -68.31 REMARK 500 6 ALA A 80 90.80 60.12 REMARK 500 7 THR A 4 177.48 63.23 REMARK 500 7 TYR A 5 -76.40 -105.58 REMARK 500 7 ASP A 12 37.37 -96.91 REMARK 500 7 ASN A 19 33.64 -146.55 REMARK 500 7 ASP A 30 -177.74 -67.33 REMARK 500 7 PHE A 32 91.46 -64.66 REMARK 500 7 LYS A 44 -48.24 -148.09 REMARK 500 7 SER A 50 -58.11 -128.59 REMARK 500 7 SER A 52 42.92 70.92 REMARK 500 7 GLU A 77 164.51 67.52 REMARK 500 7 ILE A 79 -46.43 -141.20 REMARK 500 7 ALA A 80 30.92 -144.65 REMARK 500 8 SER A 3 34.84 -140.74 REMARK 500 8 ASP A 12 37.05 -98.09 REMARK 500 8 THR A 14 89.84 -66.87 REMARK 500 8 GLU A 18 -45.86 -140.29 REMARK 500 8 TYR A 24 135.27 -173.09 REMARK 500 8 SER A 50 -57.58 -128.55 REMARK 500 8 GLU A 77 163.55 67.33 REMARK 500 9 TYR A 5 -74.04 -106.72 REMARK 500 9 ASP A 12 37.12 -96.26 REMARK 500 9 ASN A 19 24.30 -144.85 REMARK 500 9 PRO A 25 94.31 -52.13 REMARK 500 9 ASP A 30 -166.55 -113.83 REMARK 500 9 MET A 39 30.94 -93.10 REMARK 500 9 PHE A 40 -47.32 -131.42 REMARK 500 9 LYS A 44 -45.98 -154.98 REMARK 500 9 SER A 50 -58.31 -128.41 REMARK 500 9 SER A 52 37.13 70.03 REMARK 500 9 PRO A 78 87.93 -54.66 REMARK 500 9 ALA A 80 157.25 66.44 REMARK 500 9 ALA A 82 76.49 62.00 REMARK 500 10 MET A 39 36.79 -90.77 REMARK 500 10 PHE A 40 -49.89 -139.84 REMARK 500 10 ALA A 81 34.47 -143.85 REMARK 500 10 ALA A 82 -58.07 -140.46 REMARK 500 11 ASP A 12 36.09 -97.57 REMARK 500 11 PRO A 17 72.47 -68.27 REMARK 500 11 GLU A 18 -50.39 -151.85 REMARK 500 11 TYR A 24 99.83 -172.12 REMARK 500 11 PRO A 25 99.76 -51.21 REMARK 500 11 LYS A 44 -45.13 -163.83 REMARK 500 11 SER A 52 39.42 70.79 REMARK 500 11 PRO A 78 -178.59 -69.98 REMARK 500 11 ILE A 79 102.35 68.44 REMARK 500 12 ASP A 12 36.10 -97.28 REMARK 500 12 GLU A 18 -45.82 -131.44 REMARK 500 12 ASN A 19 32.13 -141.71 REMARK 500 12 SER A 50 -56.82 -129.07 REMARK 500 12 GLU A 77 86.11 61.18 REMARK 500 12 ILE A 79 81.53 65.19 REMARK 500 12 ALA A 81 151.83 69.29 REMARK 500 12 ALA A 82 100.78 63.61 REMARK 500 13 ASP A 12 38.37 -98.03 REMARK 500 13 GLU A 18 -53.78 -135.14 REMARK 500 13 PRO A 25 94.33 -55.05 REMARK 500 13 ASP A 30 -167.12 -126.55 REMARK 500 13 SER A 50 -60.29 -132.99 REMARK 500 13 HIS A 74 84.12 65.07 REMARK 500 13 GLU A 77 -60.30 -160.94 REMARK 500 13 ALA A 81 102.89 61.82 REMARK 500 13 ALA A 82 -76.04 -130.86 REMARK 500 14 SER A 3 177.43 61.83 REMARK 500 14 THR A 4 -173.44 55.72 REMARK 500 14 TYR A 5 -40.84 -164.65 REMARK 500 14 ASP A 12 38.27 -95.94 REMARK 500 14 GLU A 18 -50.21 -132.68 REMARK 500 14 LYS A 44 -47.14 -157.10 REMARK 500 14 SER A 50 -58.20 -128.35 REMARK 500 14 PRO A 78 95.69 -54.97 REMARK 500 15 ASP A 12 36.83 -95.76 REMARK 500 15 ASN A 19 29.39 -141.85 REMARK 500 15 TYR A 24 134.79 -171.68 REMARK 500 15 ILE A 34 127.87 -173.98 REMARK 500 15 SER A 50 -59.26 -128.02 REMARK 500 16 ASP A 12 36.99 -97.90 REMARK 500 16 GLN A 20 75.26 56.08 REMARK 500 16 SER A 50 -56.79 -129.00 REMARK 500 16 ALA A 82 -50.54 -161.36 REMARK 500 17 TYR A 5 -73.74 -108.03 REMARK 500 17 ASP A 12 37.22 -96.44 REMARK 500 17 ASN A 19 26.67 -148.71 REMARK 500 17 PRO A 25 97.08 -67.30 REMARK 500 17 LYS A 44 -46.80 -162.77 REMARK 500 17 SER A 50 -57.86 -127.74 REMARK 500 17 PRO A 78 87.84 -56.87 REMARK 500 17 ILE A 79 133.93 66.86 REMARK 500 17 ALA A 80 -65.90 -130.83 REMARK 500 18 VAL A 2 33.75 -149.59 REMARK 500 18 SER A 3 -164.21 61.75 REMARK 500 18 ASP A 12 40.32 -98.63 REMARK 500 18 GLU A 18 -49.48 -135.92 REMARK 500 18 ASP A 30 -177.77 -69.49 REMARK 500 18 ILE A 34 149.24 -174.79 REMARK 500 18 MET A 39 33.41 -91.55 REMARK 500 18 PHE A 40 -47.32 -135.95 REMARK 500 18 LYS A 44 -47.35 -156.21 REMARK 500 18 SER A 50 -57.13 -131.26 REMARK 500 18 ASP A 60 -167.10 -121.87 REMARK 500 18 GLU A 77 85.91 -168.09 REMARK 500 18 PRO A 78 171.98 -58.53 REMARK 500 18 ALA A 80 43.37 -170.03 REMARK 500 19 ASP A 12 36.79 -96.18 REMARK 500 19 GLU A 18 -51.89 -137.05 REMARK 500 19 PRO A 25 96.18 -54.34 REMARK 500 19 ASP A 30 -164.72 -119.91 REMARK 500 19 SER A 50 -59.50 -129.10 REMARK 500 19 HIS A 74 79.49 -173.09 REMARK 500 19 PRO A 75 106.56 -51.68 REMARK 500 20 ASN A 19 20.03 -144.70 REMARK 500 20 GLN A 20 79.32 55.68 REMARK 500 20 LYS A 44 -47.51 -147.02 REMARK 500 20 SER A 50 -59.62 -128.03 REMARK 500 20 SER A 52 36.31 72.94 REMARK 500 20 PRO A 78 100.92 -52.93 REMARK 500 20 ILE A 79 -45.20 -148.05 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 84 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 26 SG REMARK 620 2 CYS A 28 SG 108.2 REMARK 620 3 CYS A 48 SG 110.3 110.0 REMARK 620 4 CYS A 51 SG 110.0 109.4 108.9 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 84
DBREF 1YOP A 1 83 UNP Q3E840 DPH3_YEAST 1 82
SEQADV 1YOP VAL A 2 UNP Q3E840 INSERTION
SEQRES 1 A 83 MET VAL SER THR TYR ASP GLU ILE GLU ILE GLU ASP MET SEQRES 2 A 83 THR PHE GLU PRO GLU ASN GLN MET PHE THR TYR PRO CYS SEQRES 3 A 83 PRO CYS GLY ASP ARG PHE GLN ILE TYR LEU ASP ASP MET SEQRES 4 A 83 PHE GLU GLY GLU LYS VAL ALA VAL CYS PRO SER CYS SER SEQRES 5 A 83 LEU MET ILE ASP VAL VAL PHE ASP LYS GLU ASP LEU ALA SEQRES 6 A 83 GLU TYR TYR GLU GLU ALA GLY ILE HIS PRO PRO GLU PRO SEQRES 7 A 83 ILE ALA ALA ALA ALA
HET ZN A 84 1
HETNAM ZN ZINC ION
FORMUL 2 ZN ZN 2+
HELIX 1 1 GLU A 9 MET A 13 5 5 HELIX 2 2 LEU A 36 GLU A 41 1 6 HELIX 3 3 GLU A 62 ALA A 71 1 10
SHEET 1 A 3 THR A 14 GLU A 16 0 SHEET 2 A 3 MET A 21 CYS A 26 -1 O MET A 21 N GLU A 16 SHEET 3 A 3 ASP A 30 TYR A 35 -1 O ILE A 34 N PHE A 22 SHEET 1 B 2 VAL A 45 VAL A 47 0 SHEET 2 B 2 MET A 54 ASP A 56 -1 O ILE A 55 N ALA A 46
LINK ZN ZN A 84 SG CYS A 26 1555 1555 2.41 LINK ZN ZN A 84 SG CYS A 28 1555 1555 2.41 LINK ZN ZN A 84 SG CYS A 48 1555 1555 2.40 LINK ZN ZN A 84 SG CYS A 51 1555 1555 2.41
SITE 1 AC1 4 CYS A 26 CYS A 28 CYS A 48 CYS A 51
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000