10 20 30 40 50 60 70 80 1YO4 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER VIRAL PROTEIN 26-JAN-05 1YO4
TITLE SOLUTION STRUCTURE OF THE SARS CORONAVIRUS ORF 7A CODED X4 TITLE 2 PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN X4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL ECTODOMAIN(RESIDUES 1-84); COMPND 5 SYNONYM: ORF7A PROTEIN, ORF8; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SARS CORONAVIRUS; SOURCE 3 ORGANISM_TAXID: 227859; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B
KEYWDS BETA-SANDWICH, IMMUNOGLOBULIN-LIKE DOMAIN, VIRAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR K.HAENEL,T.STANGLER,M.STOLDT,D.WILLBOLD
REVDAT 3 24-FEB-09 1YO4 1 VERSN REVDAT 2 23-MAY-06 1YO4 1 JRNL REVDAT 1 17-JAN-06 1YO4 0
JRNL AUTH K.HAENEL,T.STANGLER,M.STOLDT,D.WILLBOLD JRNL TITL SOLUTION STRUCTURE OF THE X4 PROTEIN CODED BY THE JRNL TITL 2 SARS RELATED CORONAVIRUS REVEALS AN IMMUNOGLOBULIN JRNL TITL 3 LIKE FOLD AND SUGGESTS A BINDING ACTIVITY TO JRNL TITL 4 INTEGRIN I DOMAINS. JRNL REF J.BIOMED.SCI. V. 13 281 2006 JRNL REFN ISSN 1021-7770 JRNL PMID 16328780 JRNL DOI 10.1007/S11373-005-9043-9
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, A.T. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1YO4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-JAN-05. REMARK 100 THE RCSB ID CODE IS RCSB031740.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 315 REMARK 210 PH : 5 REMARK 210 IONIC STRENGTH : 1MM SODIUM ACETATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4MM ORF7A PROTEIN U-15N, REMARK 210 13C; 1MM SODIUM ACETATE REMARK 210 (DEUTERATED), 93% H2O, 7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1D, NMRPIPE N.A., CARA REMARK 210 1.1.5, ARIA 1.2, CNS 1.1 REMARK 210 METHOD USED : MOLECULAR DYNAMICS SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 8 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 10 108.38 -57.68 REMARK 500 1 LEU A 15 77.91 -118.59 REMARK 500 1 ASP A 36 38.87 71.05 REMARK 500 1 CYS A 43 109.10 -56.96 REMARK 500 1 PHE A 48 -169.00 -125.87 REMARK 500 1 SER A 66 -178.01 -66.10 REMARK 500 1 LYS A 70 -65.18 -122.88 REMARK 500 1 LEU A 71 -85.99 63.02 REMARK 500 1 ARG A 74 -41.00 75.23 REMARK 500 1 GLU A 76 -155.92 57.67 REMARK 500 1 VAL A 78 -33.41 -135.66 REMARK 500 1 GLN A 79 -178.41 61.33 REMARK 500 1 GLN A 80 -4.85 71.96 REMARK 500 1 LEU A 82 -79.49 -132.89 REMARK 500 1 TYR A 83 75.36 -109.10 REMARK 500 2 SER A 22 61.59 174.56 REMARK 500 2 PRO A 30 99.67 -68.37 REMARK 500 2 ALA A 35 -105.15 47.39 REMARK 500 2 ASP A 36 -88.02 -77.46 REMARK 500 2 ASN A 37 57.27 -143.50 REMARK 500 2 SER A 66 -148.60 -162.66 REMARK 500 2 LEU A 71 150.62 67.89 REMARK 500 2 PHE A 72 60.94 61.02 REMARK 500 2 ARG A 74 1.04 -175.05 REMARK 500 2 GLN A 75 -5.55 -166.78 REMARK 500 2 GLU A 76 -92.90 -93.71 REMARK 500 2 GLU A 77 65.13 -115.64 REMARK 500 2 VAL A 78 -13.30 -160.33 REMARK 500 2 GLN A 80 85.58 -69.29 REMARK 500 2 LEU A 82 -41.78 -130.49 REMARK 500 3 PHE A 31 126.57 68.90 REMARK 500 3 LEU A 34 -98.43 -99.97 REMARK 500 3 SER A 45 99.80 -62.60 REMARK 500 3 SER A 66 -167.61 -79.45 REMARK 500 3 VAL A 67 -50.78 88.54 REMARK 500 3 ARG A 74 -75.18 -141.72 REMARK 500 3 GLN A 75 55.37 -144.59 REMARK 500 3 GLN A 80 36.39 -175.07 REMARK 500 3 GLU A 81 -62.19 -98.59 REMARK 500 4 ARG A 10 103.42 -59.49 REMARK 500 4 SER A 29 101.67 72.37 REMARK 500 4 ASP A 36 23.97 176.58 REMARK 500 4 CYS A 43 109.63 -57.17 REMARK 500 4 ALA A 64 97.81 -57.17 REMARK 500 4 PHE A 72 -88.35 66.30 REMARK 500 4 ILE A 73 -82.07 60.29 REMARK 500 4 ARG A 74 107.15 -169.25 REMARK 500 4 GLN A 80 48.23 -80.79 REMARK 500 4 TYR A 83 -84.51 61.42 REMARK 500 4 SER A 84 -64.25 71.98 REMARK 500 5 ARG A 10 98.42 -59.32 REMARK 500 5 PRO A 21 83.31 -60.43 REMARK 500 5 SER A 22 166.10 65.57 REMARK 500 5 ASN A 28 -61.37 -95.31 REMARK 500 5 ASP A 36 39.21 -93.86 REMARK 500 5 ALA A 53 37.68 -74.80 REMARK 500 5 ARG A 65 59.20 -94.94 REMARK 500 5 VAL A 67 -56.59 72.68 REMARK 500 5 LEU A 71 96.41 67.29 REMARK 500 5 PHE A 72 -177.28 168.46 REMARK 500 5 GLN A 75 69.46 66.30 REMARK 500 5 GLU A 76 -78.63 -76.54 REMARK 500 5 GLU A 77 -35.56 -162.74 REMARK 500 5 GLN A 79 -134.95 -128.84 REMARK 500 5 GLU A 81 -126.30 47.31 REMARK 500 5 TYR A 83 27.31 -154.45 REMARK 500 6 SER A 22 100.22 -163.38 REMARK 500 6 ASN A 28 -71.47 -141.02 REMARK 500 6 ALA A 35 -123.40 61.62 REMARK 500 6 ASP A 36 -76.77 -70.84 REMARK 500 6 ASN A 37 54.32 -158.55 REMARK 500 6 CYS A 43 103.06 -52.34 REMARK 500 6 ALA A 64 99.33 -68.47 REMARK 500 6 ARG A 65 33.77 -83.89 REMARK 500 6 SER A 66 -139.57 48.37 REMARK 500 6 LEU A 71 -88.40 67.50 REMARK 500 6 ARG A 74 -15.60 74.14 REMARK 500 6 VAL A 78 -29.11 78.84 REMARK 500 6 GLN A 79 178.24 62.63 REMARK 500 6 LEU A 82 -80.12 -113.52 REMARK 500 7 CYS A 20 149.93 178.50 REMARK 500 7 SER A 22 -67.13 75.47 REMARK 500 7 GLU A 26 76.91 -109.15 REMARK 500 7 ASP A 36 36.70 -95.68 REMARK 500 7 GLN A 75 74.36 -66.26 REMARK 500 7 GLU A 76 -141.03 -83.90 REMARK 500 7 VAL A 78 47.76 -100.52 REMARK 500 7 LEU A 82 -67.34 -162.39 REMARK 500 8 SER A 22 76.67 -160.99 REMARK 500 8 ALA A 35 -106.28 51.88 REMARK 500 8 ASP A 36 -87.45 -63.62 REMARK 500 8 ASN A 37 53.02 -152.49 REMARK 500 8 CYS A 43 106.51 -54.93 REMARK 500 8 SER A 66 -61.30 64.12 REMARK 500 8 VAL A 67 -144.68 57.69 REMARK 500 8 LEU A 71 -119.22 56.95 REMARK 500 8 GLU A 76 -102.98 -92.63 REMARK 500 8 VAL A 78 88.96 66.58 REMARK 500 8 GLN A 80 -95.86 -111.01 REMARK 500 8 LEU A 82 -153.79 -177.45 REMARK 500 9 PHE A 31 158.11 66.08 REMARK 500 9 HIS A 32 91.90 -169.15 REMARK 500 9 ASP A 36 30.06 -91.70 REMARK 500 9 ASN A 37 66.18 73.66 REMARK 500 9 CYS A 52 -156.61 -95.38 REMARK 500 9 ALA A 53 44.59 -74.32 REMARK 500 9 SER A 66 99.30 -59.38 REMARK 500 9 VAL A 67 7.79 -150.28 REMARK 500 9 SER A 68 93.98 56.63 REMARK 500 9 PRO A 69 94.76 -67.15 REMARK 500 9 LYS A 70 -53.27 71.65 REMARK 500 9 LEU A 71 -143.71 178.48 REMARK 500 9 GLU A 76 -84.41 -105.35 REMARK 500 9 GLU A 77 -62.38 -137.17 REMARK 500 9 LEU A 82 -128.44 -84.60 REMARK 500 10 LEU A 15 75.25 -114.76 REMARK 500 10 PRO A 21 105.17 -59.20 REMARK 500 10 SER A 22 122.28 76.04 REMARK 500 10 PRO A 33 105.61 -53.22 REMARK 500 10 ALA A 35 -113.74 53.01 REMARK 500 10 ASP A 36 -78.93 -71.28 REMARK 500 10 ASN A 37 69.03 -153.14 REMARK 500 10 CYS A 43 107.76 -53.71 REMARK 500 10 PHE A 48 -156.75 -122.70 REMARK 500 10 ALA A 53 3.80 -67.84 REMARK 500 10 PHE A 72 -101.57 65.00 REMARK 500 10 ILE A 73 -75.96 62.51 REMARK 500 10 ARG A 74 -28.78 -163.77 REMARK 500 10 GLN A 75 -133.67 -150.31 REMARK 500 10 GLU A 76 -125.67 63.85 REMARK 500 10 VAL A 78 113.24 -165.55 REMARK 500 10 LEU A 82 -153.94 -174.76 REMARK 500 10 SER A 84 104.93 75.51 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1YO4 A 1 84 UNP P59635 YX4_CVHSA 16 99
SEQADV 1YO4 GLY A -2 UNP P59635 CLONING ARTIFACT SEQADV 1YO4 PRO A -1 UNP P59635 CLONING ARTIFACT SEQADV 1YO4 ARG A 85 UNP P59635 CLONING ARTIFACT
SEQRES 1 A 87 GLY PRO GLU LEU TYR HIS TYR GLN GLU CYS VAL ARG GLY SEQRES 2 A 87 THR THR VAL LEU LEU LYS GLU PRO CYS PRO SER GLY THR SEQRES 3 A 87 TYR GLU GLY ASN SER PRO PHE HIS PRO LEU ALA ASP ASN SEQRES 4 A 87 LYS PHE ALA LEU THR CYS THR SER THR HIS PHE ALA PHE SEQRES 5 A 87 ALA CYS ALA ASP GLY THR ARG HIS THR TYR GLN LEU ARG SEQRES 6 A 87 ALA ARG SER VAL SER PRO LYS LEU PHE ILE ARG GLN GLU SEQRES 7 A 87 GLU VAL GLN GLN GLU LEU TYR SER ARG
SHEET 1 A 4 HIS A 4 VAL A 9 0 SHEET 2 A 4 ARG A 57 ARG A 65 1 O THR A 59 N HIS A 4 SHEET 3 A 4 THR A 46 ALA A 51 -1 N PHE A 48 O TYR A 60 SHEET 4 A 4 THR A 24 GLU A 26 -1 N THR A 24 O ALA A 51 SHEET 1 B 3 THR A 13 LYS A 17 0 SHEET 2 B 3 LYS A 38 THR A 42 -1 O LEU A 41 N VAL A 14 SHEET 3 B 3 PRO A 33 LEU A 34 -1 N LEU A 34 O LYS A 38
SSBOND 1 CYS A 8 CYS A 43 1555 1555 2.03 SSBOND 2 CYS A 20 CYS A 52 1555 1555 2.03
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000