10 20 30 40 50 60 70 80 1YNY - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 26-JAN-05 1YNY
TITLE MOLECULAR STRUCTURE OF D-HYDANTOINASE FROM A BACILLUS SP. AR9: TITLE 2 EVIDENCE FOR MERCURY INHIBITION
COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-HYDANTOINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DIHYDROPYRIMIDINASE; DHPASE; COMPND 5 EC: 3.5.2.2; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SP.; SOURCE 3 ORGANISM_TAXID: 301298; SOURCE 4 STRAIN: AR9; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A
KEYWDS TIM-BARREL; HYDANTOINASE; BINUCLEAR METAL-BINDING; HYDROLASE, KEYWDS 2 HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR K.V.RADHA KISHAN,R.M.VOHRA,K.GANESHAN,V.AGRAWAL,V.M.SHARMA,R.SHARMA
REVDAT 3 13-JUL-11 1YNY 1 VERSN REVDAT 2 24-FEB-09 1YNY 1 VERSN REVDAT 1 01-MAR-05 1YNY 0
JRNL AUTH K.V.RADHA KISHAN,R.M.VOHRA,K.GANESAN,V.AGRAWAL,V.M.SHARMA, JRNL AUTH 2 R.SHARMA JRNL TITL MOLECULAR STRUCTURE OF D-HYDANTOINASE FROM BACILLUS SP. AR9: JRNL TITL 2 EVIDENCE FOR MERCURY INHIBITION. JRNL REF J.MOL.BIOL. V. 347 95 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15733920 JRNL DOI 10.1016/J.JMB.2005.01.025
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH V.AGRAWAL,R.SHARMA,K.GANESHAN,K.V.RADHA KISHAN REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION ANALYSIS REMARK 1 TITL 2 OF A THERMOSTABLE D-HYDANTOINASE FROM MESOPHILIC BACILLUS REMARK 1 TITL 3 SP.AR9 REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 58 2175 2002 REMARK 1 REFN ISSN 0907-4449
REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 42440 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : R-FREE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2096 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7047 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 282 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.70800 REMARK 3 B22 (A**2) : -0.70800 REMARK 3 B33 (A**2) : 1.41600 REMARK 3 B12 (A**2) : -1.36800 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : OVERALL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.284 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.007 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.111 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.039 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1YNY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-05. REMARK 100 THE RCSB ID CODE IS RCSB031734.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-00 REMARK 200 TEMPERATURE (KELVIN) : 300 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42440 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.37600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: MODIFIED D-HYDANTOINASE FROM THERMUS SP. (PDB ID REMARK 200 1GKP) REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, CESIUM CHLORIDE, IMIDAZOLE, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 300K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.28333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 68.56667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.28333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.56667 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS TWO MOLECULES IDENTIFIED AS REMARK 300 CHAIN A AND B. EACH MOLECULE IS INDEPENDENT AND BIOLOGICALLY ACTIVE.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 35 REMARK 465 SER A 36 REMARK 465 VAL A 37 REMARK 465 ASN A 38 REMARK 465 PRO A 461 REMARK 465 MET B 1 REMARK 465 PRO B 461
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 40 156.31 164.41 REMARK 500 PHE A 65 99.15 -161.38 REMARK 500 LYS A 115 -42.68 -130.51 REMARK 500 ALA A 129 66.94 -107.62 REMARK 500 TYR A 155 61.90 64.05 REMARK 500 VAL A 158 -72.26 -131.13 REMARK 500 SER A 233 -156.07 -102.43 REMARK 500 HIS A 239 75.09 22.83 REMARK 500 PRO A 278 -82.54 -27.22 REMARK 500 ASP A 279 -125.42 -66.66 REMARK 500 ASP A 315 41.86 70.24 REMARK 500 CYS A 317 70.42 -157.46 REMARK 500 GLN A 324 -65.16 -132.63 REMARK 500 ASP A 331 138.14 -172.40 REMARK 500 SER A 369 -64.38 -149.49 REMARK 500 GLU A 419 121.86 -36.03 REMARK 500 VAL A 428 -62.96 -97.01 REMARK 500 GLU B 24 -66.64 -103.08 REMARK 500 HIS B 33 -63.39 -123.25 REMARK 500 GLN B 34 87.08 -49.48 REMARK 500 LEU B 35 106.44 -48.89 REMARK 500 SER B 36 36.31 -96.77 REMARK 500 ASN B 38 -93.92 -76.97 REMARK 500 ASP B 73 -166.85 -105.56 REMARK 500 LYS B 115 -35.22 -136.58 REMARK 500 ALA B 129 60.04 -113.57 REMARK 500 VAL B 158 -69.78 -127.61 REMARK 500 SER B 233 -156.38 -102.75 REMARK 500 HIS B 239 75.71 27.25 REMARK 500 CYS B 317 70.74 -158.13 REMARK 500 GLN B 324 -58.01 -132.40 REMARK 500 ASP B 331 124.89 177.27 REMARK 500 SER B 369 -54.71 -149.43 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 471 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 58 NE2 REMARK 620 2 ASP A 315 OD1 76.8 REMARK 620 3 HOH A1128 O 109.5 80.8 REMARK 620 4 HIS A 60 NE2 102.1 86.7 142.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 472 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 183 ND1 REMARK 620 2 HIS A 239 NE2 87.8 REMARK 620 3 HOH A1112 O 92.0 150.1 REMARK 620 4 HOH A1128 O 152.6 85.5 81.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 471 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 58 NE2 REMARK 620 2 HIS B 60 NE2 111.2 REMARK 620 3 ASP B 315 OD1 75.9 93.6 REMARK 620 4 HOH B5110 O 101.3 142.8 76.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 472 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 239 NE2 REMARK 620 2 HOH B5109 O 146.8 REMARK 620 3 HOH B5110 O 84.7 83.1 REMARK 620 4 HIS B 183 ND1 90.7 87.5 154.8 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 471 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 472 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 471 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 472
DBREF 1YNY A 1 461 UNP Q5DLU2 Q5DLU2_9BACI 1 461 DBREF 1YNY B 1 461 UNP Q5DLU2 Q5DLU2_9BACI 1 461
SEQRES 1 A 461 MET LYS LYS TRP ILE ARG GLY GLY THR VAL VAL THR ALA SEQRES 2 A 461 ALA ASP THR TYR GLN ALA ASP VAL LEU ILE GLU GLY GLU SEQRES 3 A 461 ARG VAL VAL ALA ILE GLY HIS GLN LEU SER VAL ASN GLY SEQRES 4 A 461 ALA GLU GLU ILE ASP ALA THR GLY CYS TYR VAL ILE PRO SEQRES 5 A 461 GLY GLY ILE ASP PRO HIS THR HIS LEU ASP MET PRO PHE SEQRES 6 A 461 GLY GLY THR VAL THR ALA ASP ASP PHE PHE THR GLY THR SEQRES 7 A 461 ARG ALA ALA ALA PHE GLY GLY THR THR SER ILE VAL ASP SEQRES 8 A 461 PHE CYS LEU THR LYS LYS GLY GLU SER LEU LYS SER ALA SEQRES 9 A 461 ILE ALA THR TRP HIS GLU LYS ALA ARG GLY LYS ALA VAL SEQRES 10 A 461 ILE ASP TYR GLY PHE HIS LEU MET ILE ALA GLU ALA ASN SEQRES 11 A 461 ASP GLN VAL LEU GLU GLU LEU GLU SER VAL ILE SER SER SEQRES 12 A 461 GLU GLY ILE THR SER LEU LYS VAL PHE MET ALA TYR LYS SEQRES 13 A 461 ASN VAL PHE GLN ALA ASP ASP GLU THR LEU PHE LYS THR SEQRES 14 A 461 LEU VAL LYS ALA LYS GLU LEU GLY ALA LEU VAL GLN VAL SEQRES 15 A 461 HIS ALA GLU ASN GLY ASP VAL LEU ASP TYR LEU THR LYS SEQRES 16 A 461 LYS ALA LEU ALA GLU GLY ASN THR ASP PRO ILE TYR HIS SEQRES 17 A 461 ALA TYR THR ARG PRO PRO GLU ALA GLU GLY GLU ALA THR SEQRES 18 A 461 GLY ARG ALA ILE ALA LEU THR ALA LEU ALA GLY SER GLN SEQRES 19 A 461 LEU TYR VAL VAL HIS VAL SER CYS ALA SER ALA VAL GLN SEQRES 20 A 461 ARG ILE ALA GLU ALA ARG GLU LYS GLY TRP ASN VAL TYR SEQRES 21 A 461 GLY GLU THR CYS PRO GLN TYR LEU ALA LEU ASP VAL SER SEQRES 22 A 461 ILE MET ASP GLN PRO ASP PHE GLU GLY ALA LYS TYR VAL SEQRES 23 A 461 TRP SER PRO PRO LEU ARG GLU LYS TRP ASN GLN GLU VAL SEQRES 24 A 461 LEU TRP SER ALA LEU LYS ASN GLY ILE LEU GLN THR VAL SEQRES 25 A 461 GLY SER ASP HIS CYS PRO PHE ASN PHE ARG GLY GLN LYS SEQRES 26 A 461 GLU LEU GLY ARG GLY ASP PHE THR LYS ILE PRO ASN GLY SEQRES 27 A 461 GLY PRO LEU ILE GLU ASP ARG LEU THR ILE LEU TYR SER SEQRES 28 A 461 GLU GLY VAL ARG GLN GLY ARG ILE SER LEU ASN GLN PHE SEQRES 29 A 461 VAL ASP ILE SER SER THR LYS ALA ALA LYS LEU PHE GLY SEQRES 30 A 461 MET PHE PRO ARG LYS GLY THR ILE ALA VAL GLY SER ASP SEQRES 31 A 461 ALA ASP ILE VAL ILE PHE ASP PRO HIS VAL LYS ARG THR SEQRES 32 A 461 LEU SER VAL GLU THR HIS HIS MET ASN VAL ASP TYR ASN SEQRES 33 A 461 PRO PHE GLU GLY MET GLU VAL TYR GLY GLU VAL VAL SER SEQRES 34 A 461 VAL LEU SER ARG GLY SER PHE VAL VAL ARG ASP LYS GLN SEQRES 35 A 461 PHE VAL GLY GLN ALA GLY SER GLY GLN TYR ILE LYS ARG SEQRES 36 A 461 THR THR PHE GLU GLN PRO SEQRES 1 B 461 MET LYS LYS TRP ILE ARG GLY GLY THR VAL VAL THR ALA SEQRES 2 B 461 ALA ASP THR TYR GLN ALA ASP VAL LEU ILE GLU GLY GLU SEQRES 3 B 461 ARG VAL VAL ALA ILE GLY HIS GLN LEU SER VAL ASN GLY SEQRES 4 B 461 ALA GLU GLU ILE ASP ALA THR GLY CYS TYR VAL ILE PRO SEQRES 5 B 461 GLY GLY ILE ASP PRO HIS THR HIS LEU ASP MET PRO PHE SEQRES 6 B 461 GLY GLY THR VAL THR ALA ASP ASP PHE PHE THR GLY THR SEQRES 7 B 461 ARG ALA ALA ALA PHE GLY GLY THR THR SER ILE VAL ASP SEQRES 8 B 461 PHE CYS LEU THR LYS LYS GLY GLU SER LEU LYS SER ALA SEQRES 9 B 461 ILE ALA THR TRP HIS GLU LYS ALA ARG GLY LYS ALA VAL SEQRES 10 B 461 ILE ASP TYR GLY PHE HIS LEU MET ILE ALA GLU ALA ASN SEQRES 11 B 461 ASP GLN VAL LEU GLU GLU LEU GLU SER VAL ILE SER SER SEQRES 12 B 461 GLU GLY ILE THR SER LEU LYS VAL PHE MET ALA TYR LYS SEQRES 13 B 461 ASN VAL PHE GLN ALA ASP ASP GLU THR LEU PHE LYS THR SEQRES 14 B 461 LEU VAL LYS ALA LYS GLU LEU GLY ALA LEU VAL GLN VAL SEQRES 15 B 461 HIS ALA GLU ASN GLY ASP VAL LEU ASP TYR LEU THR LYS SEQRES 16 B 461 LYS ALA LEU ALA GLU GLY ASN THR ASP PRO ILE TYR HIS SEQRES 17 B 461 ALA TYR THR ARG PRO PRO GLU ALA GLU GLY GLU ALA THR SEQRES 18 B 461 GLY ARG ALA ILE ALA LEU THR ALA LEU ALA GLY SER GLN SEQRES 19 B 461 LEU TYR VAL VAL HIS VAL SER CYS ALA SER ALA VAL GLN SEQRES 20 B 461 ARG ILE ALA GLU ALA ARG GLU LYS GLY TRP ASN VAL TYR SEQRES 21 B 461 GLY GLU THR CYS PRO GLN TYR LEU ALA LEU ASP VAL SER SEQRES 22 B 461 ILE MET ASP GLN PRO ASP PHE GLU GLY ALA LYS TYR VAL SEQRES 23 B 461 TRP SER PRO PRO LEU ARG GLU LYS TRP ASN GLN GLU VAL SEQRES 24 B 461 LEU TRP SER ALA LEU LYS ASN GLY ILE LEU GLN THR VAL SEQRES 25 B 461 GLY SER ASP HIS CYS PRO PHE ASN PHE ARG GLY GLN LYS SEQRES 26 B 461 GLU LEU GLY ARG GLY ASP PHE THR LYS ILE PRO ASN GLY SEQRES 27 B 461 GLY PRO LEU ILE GLU ASP ARG LEU THR ILE LEU TYR SER SEQRES 28 B 461 GLU GLY VAL ARG GLN GLY ARG ILE SER LEU ASN GLN PHE SEQRES 29 B 461 VAL ASP ILE SER SER THR LYS ALA ALA LYS LEU PHE GLY SEQRES 30 B 461 MET PHE PRO ARG LYS GLY THR ILE ALA VAL GLY SER ASP SEQRES 31 B 461 ALA ASP ILE VAL ILE PHE ASP PRO HIS VAL LYS ARG THR SEQRES 32 B 461 LEU SER VAL GLU THR HIS HIS MET ASN VAL ASP TYR ASN SEQRES 33 B 461 PRO PHE GLU GLY MET GLU VAL TYR GLY GLU VAL VAL SER SEQRES 34 B 461 VAL LEU SER ARG GLY SER PHE VAL VAL ARG ASP LYS GLN SEQRES 35 B 461 PHE VAL GLY GLN ALA GLY SER GLY GLN TYR ILE LYS ARG SEQRES 36 B 461 THR THR PHE GLU GLN PRO
HET MN A 471 1 HET MN A 472 1 HET MN B 471 1 HET MN B 472 1
HETNAM MN MANGANESE (II) ION
FORMUL 3 MN 4(MN 2+) FORMUL 7 HOH *282(H2 O)
HELIX 1 1 ASP A 73 GLY A 84 1 12 HELIX 2 2 SER A 100 ARG A 113 1 14 HELIX 3 3 ASN A 130 SER A 143 1 14 HELIX 4 4 ASP A 162 GLY A 177 1 16 HELIX 5 5 ASN A 186 GLU A 200 1 15 HELIX 6 6 ILE A 206 THR A 211 1 6 HELIX 7 7 PRO A 213 GLY A 232 1 20 HELIX 8 8 CYS A 242 LYS A 255 1 14 HELIX 9 9 CYS A 264 LEU A 270 1 7 HELIX 10 10 ASP A 271 ASP A 276 5 6 HELIX 11 11 PHE A 280 VAL A 286 5 7 HELIX 12 12 TRP A 295 ASN A 306 1 12 HELIX 13 13 GLN A 324 ARG A 329 5 6 HELIX 14 14 ASP A 331 ILE A 335 5 5 HELIX 15 15 ASP A 344 GLY A 353 1 10 HELIX 16 16 SER A 360 SER A 369 1 10 HELIX 17 17 SER A 369 PHE A 376 1 8 HELIX 18 18 ASP B 73 GLY B 84 1 12 HELIX 19 19 LYS B 102 ARG B 113 1 12 HELIX 20 20 ASN B 130 SER B 143 1 14 HELIX 21 21 ASP B 162 GLY B 177 1 16 HELIX 22 22 ASN B 186 GLU B 200 1 15 HELIX 23 23 ILE B 206 THR B 211 1 6 HELIX 24 24 PRO B 213 GLY B 232 1 20 HELIX 25 25 CYS B 242 LYS B 255 1 14 HELIX 26 26 CYS B 264 LEU B 270 1 7 HELIX 27 27 ASP B 271 ASP B 276 5 6 HELIX 28 28 PHE B 280 VAL B 286 5 7 HELIX 29 29 TRP B 295 ASN B 306 1 12 HELIX 30 30 GLN B 324 ARG B 329 5 6 HELIX 31 31 ASP B 331 ILE B 335 5 5 HELIX 32 32 ASP B 344 VAL B 354 1 11 HELIX 33 33 SER B 360 SER B 369 1 10 HELIX 34 34 SER B 369 PHE B 376 1 8
SHEET 1 A 4 ARG A 27 GLY A 32 0 SHEET 2 A 4 ASP A 20 GLU A 24 -1 N LEU A 22 O ALA A 30 SHEET 3 A 4 LYS A 3 ARG A 6 -1 N LYS A 3 O ILE A 23 SHEET 4 A 4 GLU A 41 ASP A 44 1 O GLU A 41 N TRP A 4 SHEET 1 B 7 THR A 16 GLN A 18 0 SHEET 2 B 7 THR A 9 VAL A 11 -1 N VAL A 10 O TYR A 17 SHEET 3 B 7 TYR A 49 PRO A 52 1 O VAL A 50 N VAL A 11 SHEET 4 B 7 ILE A 393 LEU A 404 -1 O PHE A 396 N TYR A 49 SHEET 5 B 7 MET A 421 SER A 432 -1 O GLU A 426 N ASP A 397 SHEET 6 B 7 SER A 435 ARG A 439 -1 O VAL A 438 N VAL A 430 SHEET 7 B 7 GLN A 442 PHE A 443 -1 O GLN A 442 N ARG A 439 SHEET 1 C 8 GLY A 54 THR A 59 0 SHEET 2 C 8 THR A 86 CYS A 93 1 O SER A 88 N ASP A 56 SHEET 3 C 8 ASP A 119 MET A 125 1 O HIS A 123 N CYS A 93 SHEET 4 C 8 SER A 148 PHE A 152 1 O SER A 148 N LEU A 124 SHEET 5 C 8 LEU A 179 HIS A 183 1 O GLN A 181 N LEU A 149 SHEET 6 C 8 LEU A 235 VAL A 237 1 O TYR A 236 N VAL A 180 SHEET 7 C 8 VAL A 259 THR A 263 1 O TYR A 260 N LEU A 235 SHEET 8 C 8 THR A 311 VAL A 312 1 O THR A 311 N GLY A 261 SHEET 1 D 2 PRO A 64 PHE A 65 0 SHEET 2 D 2 THR A 68 VAL A 69 -1 O THR A 68 N PHE A 65 SHEET 1 E 4 VAL B 28 GLY B 32 0 SHEET 2 E 4 ASP B 20 ILE B 23 -1 N LEU B 22 O ALA B 30 SHEET 3 E 4 LYS B 3 ARG B 6 -1 N LYS B 3 O ILE B 23 SHEET 4 E 4 GLU B 41 ASP B 44 1 O GLU B 41 N TRP B 4 SHEET 1 F 7 THR B 16 GLN B 18 0 SHEET 2 F 7 THR B 9 VAL B 11 -1 N VAL B 10 O TYR B 17 SHEET 3 F 7 TYR B 49 PRO B 52 1 O VAL B 50 N THR B 9 SHEET 4 F 7 ILE B 393 THR B 403 -1 O PHE B 396 N TYR B 49 SHEET 5 F 7 GLU B 422 SER B 432 -1 O LEU B 431 N ILE B 393 SHEET 6 F 7 SER B 435 ARG B 439 -1 O VAL B 438 N VAL B 430 SHEET 7 F 7 GLN B 442 PHE B 443 -1 O GLN B 442 N ARG B 439 SHEET 1 G 8 GLY B 54 THR B 59 0 SHEET 2 G 8 THR B 86 CYS B 93 1 O SER B 88 N ASP B 56 SHEET 3 G 8 ASP B 119 MET B 125 1 O HIS B 123 N ASP B 91 SHEET 4 G 8 SER B 148 PHE B 152 1 O SER B 148 N LEU B 124 SHEET 5 G 8 LEU B 179 HIS B 183 1 O GLN B 181 N LEU B 149 SHEET 6 G 8 GLN B 234 VAL B 237 1 O TYR B 236 N VAL B 180 SHEET 7 G 8 ASN B 258 THR B 263 1 O ASN B 258 N LEU B 235 SHEET 8 G 8 THR B 311 VAL B 312 1 O THR B 311 N THR B 263 SHEET 1 H 2 PRO B 64 PHE B 65 0 SHEET 2 H 2 THR B 68 VAL B 69 -1 O THR B 68 N PHE B 65
LINK MN MN A 471 NE2 HIS A 58 1555 1555 2.11 LINK MN MN A 471 OD1 ASP A 315 1555 1555 2.28 LINK MN MN A 471 O HOH A1128 1555 1555 2.12 LINK MN MN A 471 NE2 HIS A 60 1555 1555 2.22 LINK MN MN A 472 ND1 HIS A 183 1555 1555 2.25 LINK MN MN A 472 NE2 HIS A 239 1555 1555 2.33 LINK MN MN A 472 O HOH A1112 1555 1555 2.45 LINK MN MN A 472 O HOH A1128 1555 1555 2.10 LINK MN MN B 471 NE2 HIS B 58 1555 1555 2.22 LINK MN MN B 471 NE2 HIS B 60 1555 1555 2.23 LINK MN MN B 471 OD1 ASP B 315 1555 1555 2.29 LINK MN MN B 471 O HOH B5110 1555 1555 2.13 LINK MN MN B 472 NE2 HIS B 239 1555 1555 2.34 LINK MN MN B 472 O HOH B5109 1555 1555 2.29 LINK MN MN B 472 O HOH B5110 1555 1555 2.13 LINK MN MN B 472 ND1 HIS B 183 1555 1555 2.29
CISPEP 1 SER A 288 PRO A 289 0 0.07 CISPEP 2 PHE A 379 PRO A 380 0 0.27 CISPEP 3 SER B 288 PRO B 289 0 -0.11 CISPEP 4 PHE B 379 PRO B 380 0 -0.06
SITE 1 AC1 6 HIS A 58 HIS A 60 LYS A 150 ASP A 315 SITE 2 AC1 6 MN A 472 HOH A1128 SITE 1 AC2 6 LYS A 150 HIS A 183 HIS A 239 MN A 471 SITE 2 AC2 6 HOH A1112 HOH A1128 SITE 1 AC3 6 HIS B 58 HIS B 60 LYS B 150 ASP B 315 SITE 2 AC3 6 MN B 472 HOH B5110 SITE 1 AC4 6 LYS B 150 HIS B 183 HIS B 239 MN B 471 SITE 2 AC4 6 HOH B5109 HOH B5110
CRYST1 129.540 129.540 102.850 90.00 90.00 120.00 P 64 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.007720 0.004457 0.000000 0.00000
SCALE2 0.000000 0.008914 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009723 0.00000