10 20 30 40 50 60 70 80 1YGE - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DIOXYGENASE 04-JUN-96 1YGE
TITLE LIPOXYGENASE-1 (SOYBEAN) AT 100K
COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOXYGENASE-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: L-1; COMPND 5 EC: 1.13.11.12
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLYCINE MAX; SOURCE 3 ORGANISM_COMMON: SOYBEAN; SOURCE 4 ORGANISM_TAXID: 3847
KEYWDS DIOXYGENASE, LIPOXYGENASE, METALLOPROTEIN, FATTY ACIDS
EXPDTA X-RAY DIFFRACTION
AUTHOR W.MINOR,J.STECZKO,B.STEC,Z.OTWINOWSKI,J.T.BOLIN,R.WALTER, AUTHOR 2 B.AXELROD
REVDAT 2 24-FEB-09 1YGE 1 VERSN REVDAT 1 23-JUL-97 1YGE 0
JRNL AUTH W.MINOR,J.STECZKO,B.STEC,Z.OTWINOWSKI,J.T.BOLIN, JRNL AUTH 2 R.WALTER,B.AXELROD JRNL TITL CRYSTAL STRUCTURE OF SOYBEAN LIPOXYGENASE L-1 AT JRNL TITL 2 1.4 A RESOLUTION. JRNL REF BIOCHEMISTRY V. 35 10687 1996 JRNL REFN ISSN 0006-2960 JRNL PMID 8718858 JRNL DOI 10.1021/BI960576U
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.A.KRAMER,K.R.JOHNSON,W.R.DUNHAM,R.H.SANDS, REMARK 1 AUTH 2 M.O.FUNK JUNIOR REMARK 1 TITL POSITION 713 IS CRITICAL FOR CATALYSIS BUT NOT REMARK 1 TITL 2 IRON BINDING IN SOYBEAN LIPOXYGENASE REMARK 1 REF BIOCHEMISTRY V. 33 15017 1994 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.J.NELSON,S.P.SEITZ REMARK 1 TITL THE STRUCTURE AND FUNCTION OF LIPOXYGENASE REMARK 1 REF CURR.OPIN.STRUCT.BIOL. V. 4 878 1994 REMARK 1 REFN ISSN 0959-440X REMARK 1 REFERENCE 3 REMARK 1 AUTH M.J.NELSON,R.A.COWLING,S.P.SEITZ REMARK 1 TITL STRUCTURAL CHARACTERIZATION OF ALKYL AND PEROXYL REMARK 1 TITL 2 RADICALS IN SOLUTIONS OF PURPLE LIPOXYGENASE REMARK 1 REF BIOCHEMISTRY V. 33 4966 1994 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 4 REMARK 1 AUTH R.C.SCARROW,M.G.TRIMITSIS,C.P.BUCK,G.N.GROVE, REMARK 1 AUTH 2 R.A.COWLING,M.J.NELSON REMARK 1 TITL X-RAY SPECTROSCOPY OF THE IRON SITE IN SOYBEAN REMARK 1 TITL 2 LIPOXYGENASE-1: CHANGES IN COORDINATION UPON REMARK 1 TITL 3 OXIDATION OR ADDITION OF METHANOL REMARK 1 REF BIOCHEMISTRY V. 33 15023 1994 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 5 REMARK 1 AUTH J.C.BOYINGTON,B.J.GAFFNEY,L.M.AMZEL REMARK 1 TITL THE THREE-DIMENSIONAL STRUCTURE OF AN ARACHIDONIC REMARK 1 TITL 2 ACID 15-LIPOXYGENASE REMARK 1 REF SCIENCE V. 260 1482 1993 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 6 REMARK 1 AUTH W.MINOR,J.STECZKO,J.T.BOLIN,Z.OTWINOWSKI,B.AXELROD REMARK 1 TITL CRYSTALLOGRAPHIC DETERMINATION OF THE ACTIVE SITE REMARK 1 TITL 2 IRON AND ITS LIGANDS IN SOYBEAN LIPOXYGENASE L-1 REMARK 1 REF BIOCHEMISTRY V. 32 6320 1993 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 7 REMARK 1 AUTH J.STECZKO,G.P.DONOHO,J.C.CLEMENS,J.E.DIXON, REMARK 1 AUTH 2 B.AXELROD REMARK 1 TITL CONSERVED HISTIDINE RESIDUES IN SOYBEAN REMARK 1 TITL 2 LIPOXYGENASE: FUNCTIONAL CONSEQUENCES OF THEIR REMARK 1 TITL 3 REPLACEMENT REMARK 1 REF BIOCHEMISTRY V. 31 4053 1992 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 8 REMARK 1 AUTH Y.ZHANG,M.S.GEBHARD,E.I.SOLOMON REMARK 1 TITL SPECTROSCOPIC STUDIES OF THE NON-HEME FERRIC REMARK 1 TITL 2 ACTIVE SITE IN SOYBEAN LIPOXYGENASE: MAGNETIC REMARK 1 TITL 3 CIRCULAR DICHROISM AS A PROBE OF ELECTRONIC AND REMARK 1 TITL 4 GEOMETRIC STRUCTURE. LIGAND-FIELD ORIGIN OF REMARK 1 TITL 5 ZERO-FIELD REMARK 1 REF J.AM.CHEM.SOC. V. 113 5162 1991 REMARK 1 REFN ISSN 0002-7863 REMARK 1 REFERENCE 9 REMARK 1 AUTH J.STECZKO,C.R.MUCHMORE,J.L.SMITH,B.AXELROD REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY REMARK 1 TITL 2 INVESTIGATION OF LIPOXYGENASE 1 FROM SOYBEANS REMARK 1 REF J.BIOL.CHEM. V. 265 11352 1990 REMARK 1 REFN ISSN 0021-9258
REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 136841 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6665 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 1377 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE ELECTRON DENSITY FOR RESIDUES 1 REMARK 3 - 6 IS WEAK AND FRAGMENTED SUGGESTING THAT THIS IS A MOBILE REMARK 3 SEGMENT. FOR RESIDUES 22 - 30, WHICH FORM PART OF AN EXTENDED REMARK 3 LOOP, THE DENSITY INDICATES THE COURSE OF THE POLYPEPTIDE AND REMARK 3 THE LOCATION OF THE SIDE CHAINS, BUT IS NOT FULLY CONTINUOUS. REMARK 3 TWO ADDITIONAL LOOPS, COMPRISING RESIDUES 70 - 73 AND 116 - REMARK 3 120, ARE REPRESENTED BY CONTINUOUS, BUT LESS THAN DEFINITE REMARK 3 DENSITY. ALL FOUR SEGMENTS ARE INCLUDED IN THE CURRENT MODEL.
REMARK 4 REMARK 4 1YGE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : APR-93 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAC SCIENCE DIP-2000 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL (DENZO) REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 161029 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1923 O HOH A 2176 2646 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 18 7.01 -63.09 REMARK 500 SER A 27 65.65 -106.19 REMARK 500 ALA A 28 41.90 -79.57 REMARK 500 VAL A 29 -82.78 -11.57 REMARK 500 ASN A 31 156.35 -31.21 REMARK 500 LEU A 32 -53.35 -5.62 REMARK 500 LEU A 36 -159.55 -90.33 REMARK 500 THR A 73 83.24 -62.64 REMARK 500 LEU A 74 111.15 -171.76 REMARK 500 ILE A 117 90.68 -62.11 REMARK 500 SER A 118 -101.74 -165.58 REMARK 500 ASN A 119 -115.28 -59.52 REMARK 500 ASN A 146 26.73 -70.11 REMARK 500 SER A 198 142.72 -172.50 REMARK 500 ASN A 245 66.34 -115.52 REMARK 500 GLU A 294 -96.38 -106.72 REMARK 500 VAL A 312 -59.21 76.97 REMARK 500 GLN A 322 -54.51 -129.60 REMARK 500 ALA A 352 14.81 -144.55 REMARK 500 ALA A 447 149.09 -172.74 REMARK 500 MET A 497 -62.69 -105.02 REMARK 500 HIS A 499 -74.82 -95.22 REMARK 500 THR A 503 -76.81 -108.52 REMARK 500 ASN A 534 -1.51 70.46 REMARK 500 SER A 560 -128.95 54.97 REMARK 500 ASP A 607 62.29 -105.47 REMARK 500 SER A 687 -83.98 -105.40 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 861 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH A 871 DISTANCE = 7.32 ANGSTROMS REMARK 525 HOH A 884 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A 937 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A 972 DISTANCE = 8.49 ANGSTROMS REMARK 525 HOH A1009 DISTANCE = 5.14 ANGSTROMS REMARK 525 HOH A1012 DISTANCE = 7.62 ANGSTROMS REMARK 525 HOH A1024 DISTANCE = 5.06 ANGSTROMS REMARK 525 HOH A1033 DISTANCE = 5.59 ANGSTROMS REMARK 525 HOH A1036 DISTANCE = 8.90 ANGSTROMS REMARK 525 HOH A1037 DISTANCE = 5.29 ANGSTROMS REMARK 525 HOH A1039 DISTANCE = 9.04 ANGSTROMS REMARK 525 HOH A1053 DISTANCE = 13.11 ANGSTROMS REMARK 525 HOH A1065 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH A1193 DISTANCE = 7.69 ANGSTROMS REMARK 525 HOH A1210 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH A1253 DISTANCE = 8.52 ANGSTROMS REMARK 525 HOH A1265 DISTANCE = 5.74 ANGSTROMS REMARK 525 HOH A1269 DISTANCE = 7.55 ANGSTROMS REMARK 525 HOH A1332 DISTANCE = 8.58 ANGSTROMS REMARK 525 HOH A1337 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A1369 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A1373 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A1376 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH A1414 DISTANCE = 5.25 ANGSTROMS REMARK 525 HOH A1424 DISTANCE = 8.03 ANGSTROMS REMARK 525 HOH A1425 DISTANCE = 5.18 ANGSTROMS REMARK 525 HOH A1450 DISTANCE = 7.97 ANGSTROMS REMARK 525 HOH A1454 DISTANCE = 5.10 ANGSTROMS REMARK 525 HOH A1461 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A1536 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH A1584 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A1627 DISTANCE = 9.04 ANGSTROMS REMARK 525 HOH A1634 DISTANCE = 5.10 ANGSTROMS REMARK 525 HOH A1635 DISTANCE = 10.24 ANGSTROMS REMARK 525 HOH A1638 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A1693 DISTANCE = 8.27 ANGSTROMS REMARK 525 HOH A1706 DISTANCE = 5.17 ANGSTROMS REMARK 525 HOH A1715 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A1716 DISTANCE = 7.43 ANGSTROMS REMARK 525 HOH A1734 DISTANCE = 7.98 ANGSTROMS REMARK 525 HOH A1747 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH A1785 DISTANCE = 5.61 ANGSTROMS REMARK 525 HOH A1789 DISTANCE = 23.00 ANGSTROMS REMARK 525 HOH A1840 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH A1841 DISTANCE = 5.19 ANGSTROMS REMARK 525 HOH A1844 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH A1853 DISTANCE = 8.07 ANGSTROMS REMARK 525 HOH A1861 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A1863 DISTANCE = 8.09 ANGSTROMS REMARK 525 HOH A1880 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A1891 DISTANCE = 5.30 ANGSTROMS REMARK 525 HOH A1893 DISTANCE = 8.73 ANGSTROMS REMARK 525 HOH A1914 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A1915 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A1928 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A1965 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A1973 DISTANCE = 5.66 ANGSTROMS REMARK 525 HOH A1982 DISTANCE = 5.37 ANGSTROMS REMARK 525 HOH A1987 DISTANCE = 5.23 ANGSTROMS REMARK 525 HOH A1992 DISTANCE = 5.37 ANGSTROMS REMARK 525 HOH A1995 DISTANCE = 10.90 ANGSTROMS REMARK 525 HOH A1996 DISTANCE = 11.10 ANGSTROMS REMARK 525 HOH A2004 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A2008 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A2011 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A2012 DISTANCE = 5.74 ANGSTROMS REMARK 525 HOH A2020 DISTANCE = 5.03 ANGSTROMS REMARK 525 HOH A2021 DISTANCE = 13.79 ANGSTROMS REMARK 525 HOH A2030 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A2039 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A2041 DISTANCE = 5.24 ANGSTROMS REMARK 525 HOH A2056 DISTANCE = 10.81 ANGSTROMS REMARK 525 HOH A2060 DISTANCE = 12.80 ANGSTROMS REMARK 525 HOH A2061 DISTANCE = 7.65 ANGSTROMS REMARK 525 HOH A2066 DISTANCE = 9.66 ANGSTROMS REMARK 525 HOH A2068 DISTANCE = 5.29 ANGSTROMS REMARK 525 HOH A2069 DISTANCE = 9.15 ANGSTROMS REMARK 525 HOH A2094 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A2096 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH A2100 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A2107 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A2109 DISTANCE = 5.34 ANGSTROMS REMARK 525 HOH A2118 DISTANCE = 8.07 ANGSTROMS REMARK 525 HOH A2132 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH A2137 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A2143 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH A2145 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A2146 DISTANCE = 10.75 ANGSTROMS REMARK 525 HOH A2166 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A2183 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A2184 DISTANCE = 9.46 ANGSTROMS REMARK 525 HOH A2185 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH A2187 DISTANCE = 7.37 ANGSTROMS REMARK 525 HOH A2190 DISTANCE = 5.25 ANGSTROMS REMARK 525 HOH A2192 DISTANCE = 9.56 ANGSTROMS REMARK 525 HOH A2193 DISTANCE = 7.16 ANGSTROMS REMARK 525 HOH A2195 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH A2196 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH A2197 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A2204 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH A2211 DISTANCE = 5.22 ANGSTROMS REMARK 525 HOH A2217 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A2218 DISTANCE = 8.84 ANGSTROMS REMARK 525 HOH A2219 DISTANCE = 9.56 ANGSTROMS REMARK 525 HOH A2228 DISTANCE = 11.22 ANGSTROMS REMARK 525 HOH A2236 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH A2238 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A2246 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A2249 DISTANCE = 9.34 ANGSTROMS REMARK 525 HOH A2250 DISTANCE = 5.28 ANGSTROMS REMARK 525 HOH A2270 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A2273 DISTANCE = 5.30 ANGSTROMS REMARK 525 HOH A2275 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A2277 DISTANCE = 5.28 ANGSTROMS REMARK 525 HOH A2291 DISTANCE = 8.00 ANGSTROMS REMARK 525 HOH A2295 DISTANCE = 5.49 ANGSTROMS REMARK 525 HOH A2296 DISTANCE = 5.48 ANGSTROMS REMARK 525 HOH A2333 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A2347 DISTANCE = 6.44 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 840 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 499 NE2 REMARK 620 2 HIS A 504 NE2 95.2 REMARK 620 3 HIS A 690 NE2 102.3 105.9 REMARK 620 4 ILE A 839 OXT 167.1 91.5 86.4 REMARK 620 5 HOH A 842 O 86.2 97.5 154.0 81.9 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 840
DBREF 1YGE A 1 839 UNP P08170 LOX1_SOYBN 1 839
SEQRES 1 A 839 MET PHE SER ALA GLY HIS LYS ILE LYS GLY THR VAL VAL SEQRES 2 A 839 LEU MET PRO LYS ASN GLU LEU GLU VAL ASN PRO ASP GLY SEQRES 3 A 839 SER ALA VAL ASP ASN LEU ASN ALA PHE LEU GLY ARG SER SEQRES 4 A 839 VAL SER LEU GLN LEU ILE SER ALA THR LYS ALA ASP ALA SEQRES 5 A 839 HIS GLY LYS GLY LYS VAL GLY LYS ASP THR PHE LEU GLU SEQRES 6 A 839 GLY ILE ASN THR SER LEU PRO THR LEU GLY ALA GLY GLU SEQRES 7 A 839 SER ALA PHE ASN ILE HIS PHE GLU TRP ASP GLY SER MET SEQRES 8 A 839 GLY ILE PRO GLY ALA PHE TYR ILE LYS ASN TYR MET GLN SEQRES 9 A 839 VAL GLU PHE PHE LEU LYS SER LEU THR LEU GLU ALA ILE SEQRES 10 A 839 SER ASN GLN GLY THR ILE ARG PHE VAL CYS ASN SER TRP SEQRES 11 A 839 VAL TYR ASN THR LYS LEU TYR LYS SER VAL ARG ILE PHE SEQRES 12 A 839 PHE ALA ASN HIS THR TYR VAL PRO SER GLU THR PRO ALA SEQRES 13 A 839 PRO LEU VAL SER TYR ARG GLU GLU GLU LEU LYS SER LEU SEQRES 14 A 839 ARG GLY ASN GLY THR GLY GLU ARG LYS GLU TYR ASP ARG SEQRES 15 A 839 ILE TYR ASP TYR ASP VAL TYR ASN ASP LEU GLY ASN PRO SEQRES 16 A 839 ASP LYS SER GLU LYS LEU ALA ARG PRO VAL LEU GLY GLY SEQRES 17 A 839 SER SER THR PHE PRO TYR PRO ARG ARG GLY ARG THR GLY SEQRES 18 A 839 ARG GLY PRO THR VAL THR ASP PRO ASN THR GLU LYS GLN SEQRES 19 A 839 GLY GLU VAL PHE TYR VAL PRO ARG ASP GLU ASN LEU GLY SEQRES 20 A 839 HIS LEU LYS SER LYS ASP ALA LEU GLU ILE GLY THR LYS SEQRES 21 A 839 SER LEU SER GLN ILE VAL GLN PRO ALA PHE GLU SER ALA SEQRES 22 A 839 PHE ASP LEU LYS SER THR PRO ILE GLU PHE HIS SER PHE SEQRES 23 A 839 GLN ASP VAL HIS ASP LEU TYR GLU GLY GLY ILE LYS LEU SEQRES 24 A 839 PRO ARG ASP VAL ILE SER THR ILE ILE PRO LEU PRO VAL SEQRES 25 A 839 ILE LYS GLU LEU TYR ARG THR ASP GLY GLN HIS ILE LEU SEQRES 26 A 839 LYS PHE PRO GLN PRO HIS VAL VAL GLN VAL SER GLN SER SEQRES 27 A 839 ALA TRP MET THR ASP GLU GLU PHE ALA ARG GLU MET ILE SEQRES 28 A 839 ALA GLY VAL ASN PRO CYS VAL ILE ARG GLY LEU GLU GLU SEQRES 29 A 839 PHE PRO PRO LYS SER ASN LEU ASP PRO ALA ILE TYR GLY SEQRES 30 A 839 ASP GLN SER SER LYS ILE THR ALA ASP SER LEU ASP LEU SEQRES 31 A 839 ASP GLY TYR THR MET ASP GLU ALA LEU GLY SER ARG ARG SEQRES 32 A 839 LEU PHE MET LEU ASP TYR HIS ASP ILE PHE MET PRO TYR SEQRES 33 A 839 VAL ARG GLN ILE ASN GLN LEU ASN SER ALA LYS THR TYR SEQRES 34 A 839 ALA THR ARG THR ILE LEU PHE LEU ARG GLU ASP GLY THR SEQRES 35 A 839 LEU LYS PRO VAL ALA ILE GLU LEU SER LEU PRO HIS SER SEQRES 36 A 839 ALA GLY ASP LEU SER ALA ALA VAL SER GLN VAL VAL LEU SEQRES 37 A 839 PRO ALA LYS GLU GLY VAL GLU SER THR ILE TRP LEU LEU SEQRES 38 A 839 ALA LYS ALA TYR VAL ILE VAL ASN ASP SER CYS TYR HIS SEQRES 39 A 839 GLN LEU MET SER HIS TRP LEU ASN THR HIS ALA ALA MET SEQRES 40 A 839 GLU PRO PHE VAL ILE ALA THR HIS ARG HIS LEU SER VAL SEQRES 41 A 839 LEU HIS PRO ILE TYR LYS LEU LEU THR PRO HIS TYR ARG SEQRES 42 A 839 ASN ASN MET ASN ILE ASN ALA LEU ALA ARG GLN SER LEU SEQRES 43 A 839 ILE ASN ALA ASN GLY ILE ILE GLU THR THR PHE LEU PRO SEQRES 44 A 839 SER LYS TYR SER VAL GLU MET SER SER ALA VAL TYR LYS SEQRES 45 A 839 ASN TRP VAL PHE THR ASP GLN ALA LEU PRO ALA ASP LEU SEQRES 46 A 839 ILE LYS ARG GLY VAL ALA ILE LYS ASP PRO SER THR PRO SEQRES 47 A 839 HIS GLY VAL ARG LEU LEU ILE GLU ASP TYR PRO TYR ALA SEQRES 48 A 839 ALA ASP GLY LEU GLU ILE TRP ALA ALA ILE LYS THR TRP SEQRES 49 A 839 VAL GLN GLU TYR VAL PRO LEU TYR TYR ALA ARG ASP ASP SEQRES 50 A 839 ASP VAL LYS ASN ASP SER GLU LEU GLN HIS TRP TRP LYS SEQRES 51 A 839 GLU ALA VAL GLU LYS GLY HIS GLY ASP LEU LYS ASP LYS SEQRES 52 A 839 PRO TRP TRP PRO LYS LEU GLN THR LEU GLU ASP LEU VAL SEQRES 53 A 839 GLU VAL CYS LEU ILE ILE ILE TRP ILE ALA SER ALA LEU SEQRES 54 A 839 HIS ALA ALA VAL ASN PHE GLY GLN TYR PRO TYR GLY GLY SEQRES 55 A 839 LEU ILE MET ASN ARG PRO THR ALA SER ARG ARG LEU LEU SEQRES 56 A 839 PRO GLU LYS GLY THR PRO GLU TYR GLU GLU MET ILE ASN SEQRES 57 A 839 ASN HIS GLU LYS ALA TYR LEU ARG THR ILE THR SER LYS SEQRES 58 A 839 LEU PRO THR LEU ILE SER LEU SER VAL ILE GLU ILE LEU SEQRES 59 A 839 SER THR HIS ALA SER ASP GLU VAL TYR LEU GLY GLN ARG SEQRES 60 A 839 ASP ASN PRO HIS TRP THR SER ASP SER LYS ALA LEU GLN SEQRES 61 A 839 ALA PHE GLN LYS PHE GLY ASN LYS LEU LYS GLU ILE GLU SEQRES 62 A 839 GLU LYS LEU VAL ARG ARG ASN ASN ASP PRO SER LEU GLN SEQRES 63 A 839 GLY ASN ARG LEU GLY PRO VAL GLN LEU PRO TYR THR LEU SEQRES 64 A 839 LEU TYR PRO SER SER GLU GLU GLY LEU THR PHE ARG GLY SEQRES 65 A 839 ILE PRO ASN SER ILE SER ILE
HET FE A 840 1
HETNAM FE FE (III) ION
FORMUL 2 FE FE 3+ FORMUL 3 HOH *1508(H2 O)
HELIX 1 1 LYS A 17 GLU A 19 5 3 HELIX 2 2 PRO A 24 GLY A 26 5 3 HELIX 3 3 LEU A 32 PHE A 35 5 4 HELIX 4 4 GLY A 89 MET A 91 5 3 HELIX 5 5 THR A 134 LEU A 136 5 3 HELIX 6 6 PRO A 151 GLU A 153 5 3 HELIX 7 7 ALA A 156 ARG A 170 5 15 HELIX 8 8 GLU A 199 LEU A 201 5 3 HELIX 9 9 ARG A 242 GLU A 244 5 3 HELIX 10 10 SER A 251 ASP A 253 5 3 HELIX 11 11 LEU A 255 GLN A 264 5 10 HELIX 12 12 VAL A 266 ASP A 275 1 10 HELIX 13 13 PHE A 286 TYR A 293 1 8 HELIX 14 14 ARG A 301 ILE A 307 1 7 HELIX 15 15 ILE A 313 LEU A 316 5 4 HELIX 16 16 HIS A 331 VAL A 333 5 3 HELIX 17 17 ALA A 339 MET A 341 5 3 HELIX 18 18 ASP A 343 ALA A 352 1 10 HELIX 19 19 PRO A 373 TYR A 376 1 4 HELIX 20 20 ALA A 385 SER A 387 5 3 HELIX 21 21 MET A 395 GLY A 400 1 6 HELIX 22 22 HIS A 410 ASN A 421 1 12 HELIX 23 23 GLY A 473 LEU A 496 1 24 HELIX 24 24 HIS A 504 HIS A 517 1 14 HELIX 25 25 PRO A 523 TYR A 532 1 10 HELIX 26 26 ASN A 535 SER A 545 1 11 HELIX 27 27 ILE A 552 THR A 556 1 5 HELIX 28 28 SER A 560 ASN A 573 5 14 HELIX 29 29 PHE A 576 GLN A 579 5 4 HELIX 30 30 LEU A 581 LYS A 587 1 7 HELIX 31 31 PRO A 609 LEU A 631 1 23 HELIX 32 32 ASP A 636 LYS A 640 1 5 HELIX 33 33 SER A 643 GLU A 654 1 12 HELIX 34 34 GLY A 658 LEU A 660 5 3 HELIX 35 35 LEU A 672 ALA A 686 1 15 HELIX 36 36 ALA A 688 ASN A 694 1 7 HELIX 37 37 GLN A 697 GLY A 701 1 5 HELIX 38 38 PRO A 721 ASN A 728 1 8 HELIX 39 39 HIS A 730 THR A 737 1 8 HELIX 40 40 LYS A 741 LEU A 754 1 14 HELIX 41 41 SER A 776 ASN A 801 1 26 HELIX 42 42 PRO A 803 ARG A 809 5 7
SHEET 1 A 5 GLY A 66 ASN A 68 0 SHEET 2 A 5 SER A 79 GLU A 86 -1 N ASN A 82 O GLY A 66 SHEET 3 A 5 LYS A 7 PRO A 16 -1 N LEU A 14 O SER A 79 SHEET 4 A 5 PHE A 107 LEU A 114 -1 N THR A 113 O THR A 11 SHEET 5 A 5 SER A 129 VAL A 131 -1 N VAL A 131 O PHE A 107 SHEET 1 B 3 ARG A 141 PHE A 144 0 SHEET 2 B 3 PRO A 94 ASN A 101 -1 N ILE A 99 O ARG A 141 SHEET 3 B 3 VAL A 40 SER A 46 -1 N ILE A 45 O GLY A 95 SHEET 1 C 2 SER A 111 LEU A 114 0 SHEET 2 C 2 ILE A 123 VAL A 126 -1 N PHE A 125 O LEU A 112 SHEET 1 D 4 LEU A 404 ASP A 408 0 SHEET 2 D 4 ALA A 430 LEU A 437 -1 N LEU A 435 O PHE A 405 SHEET 3 D 4 LEU A 443 SER A 451 -1 N SER A 451 O ALA A 430 SHEET 4 D 4 GLN A 465 VAL A 467 -1 N VAL A 467 O ILE A 448 SHEET 1 E 2 ALA A 591 LYS A 593 0 SHEET 2 E 2 VAL A 601 LEU A 603 -1 N ARG A 602 O ILE A 592
LINK FE FE A 840 NE2 HIS A 499 1555 1555 2.24 LINK FE FE A 840 NE2 HIS A 504 1555 1555 2.26 LINK FE FE A 840 NE2 HIS A 690 1555 1555 2.21 LINK FE FE A 840 OXT ILE A 839 1555 1555 2.40 LINK FE FE A 840 O HOH A 842 1555 1555 2.56
CISPEP 1 PHE A 365 PRO A 366 0 -0.03
SITE 1 AC1 6 HIS A 499 HIS A 504 HIS A 690 ASN A 694 SITE 2 AC1 6 ILE A 839 HOH A 842
CRYST1 94.900 94.000 49.900 90.00 90.10 90.00 P 1 21 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010537 0.000000 0.000018 0.00000
SCALE2 0.000000 0.010638 0.000000 0.00000
SCALE3 0.000000 0.000000 0.020040 0.00000