1YG3 - Header Asymmetric Unit

HEADER RNA 04-JAN-05 1YG3

TITLE SOLUTION STRUCTURE OF THE SCYLV P1-P2 FRAMESHIFTING TITLE 2 PSEUDOKNOT, 20 LOWEST ENERGY STRUCTURES

COMPND MOL_ID: 1; COMPND 2 MOLECULE: SCYLV RNA PSEUDOKNOT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: IN VITRO TRANSCRIPTION

KEYWDS RNA PSEUDOKNOT; RIBOSOMAL FRAMESHIFTING; PROTONATED CYTIDINE

EXPDTA SOLUTION NMR

NUMMDL 20

AUTHOR P.V.CORNISH,M.HENNIG,D.P.GIEDROC

REVDAT 2 24-FEB-09 1YG3 1 VERSN REVDAT 1 13-DEC-05 1YG3 0

JRNL AUTH P.V.CORNISH,M.HENNIG,D.P.GIEDROC JRNL TITL A LOOP 2 CYTIDINE-STEM 1 MINOR GROOVE INTERACTION JRNL TITL 2 AS A POSITIVE DETERMINANT FOR JRNL TITL 3 PSEUDOKNOT-STIMULATED -1 RIBOSOMAL FRAMESHIFTING JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 12694 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 16123125 JRNL DOI 10.1073/PNAS.0506166102

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR-NIH 2.9.7 REMARK 3 AUTHORS : G.M. CLORE , J.KUSZEWSKI, C.D. SCHWIETERS, AND REMARK 3 N.TJANDRA REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1YG3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-05. REMARK 100 THE RCSB ID CODE IS RCSB031473.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283; 298; 298 REMARK 210 PH : 6.0; 6.0; 6.0 REMARK 210 IONIC STRENGTH : 100MM KCL; 5MM MGCL2; 100MM REMARK 210 KCL; 5MM MGCL2; 100MM KCL; 5MM REMARK 210 MGCL2 REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM SCYLV PSEUDOKNOT RNA, REMARK 210 100MM KCL, 5MM MGCL2, PH 6.0; REMARK 210 2MM SCYLV PSEUDOKNOT RNA, REMARK 210 100MM KCL, 5MM MGCL2, PH 6.0; REMARK 210 2MM SCYLV PSEUDOKNOT RNA, REMARK 210 100MM KCL, 5MM MGCL2, PH 6.0, REMARK 210 12.5MG/ML PF1 PHAGE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 3D_13C-SEPARATED_ REMARK 210 NOESY, CT-TROSY AND CT- REMARK 210 ANTITROSY, J-MODULATED HSQC, REMARK 210 2D TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ, 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA, AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN, BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 97.027.12.56, SPARKY REMARK 210 3.110, X-PLOR-NIH 2.9.7 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 25 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 C A 11 N3 C A 11 C4 -0.048 REMARK 500 1 G A 12 C5' G A 12 C4' 0.079 REMARK 500 1 G A 12 C4' G A 12 C3' 0.070 REMARK 500 1 G A 12 C2' G A 12 C1' -0.051 REMARK 500 1 G A 12 C5 G A 12 C6 -0.064 REMARK 500 1 G A 12 C6 G A 12 O6 -0.070 REMARK 500 1 C A 14 C2' C A 14 C1' -0.109 REMARK 500 1 C A 15 C2' C A 15 C1' -0.056 REMARK 500 1 C A 15 N1 C A 15 C6 0.042 REMARK 500 1 A A 16 C2' A A 16 C1' -0.057 REMARK 500 1 U A 18 C2' U A 18 C1' -0.121 REMARK 500 1 U A 18 N1 U A 18 C6 -0.062 REMARK 500 1 C A 28 N1 C A 28 C6 0.068 REMARK 500 2 A A 3 C2' A A 3 C1' -0.060 REMARK 500 2 A A 3 O4' A A 3 C4' -0.115 REMARK 500 2 G A 4 C5' G A 4 C4' 0.095 REMARK 500 2 G A 4 C4' G A 4 C3' 0.095 REMARK 500 2 G A 4 C5 G A 4 N7 0.038 REMARK 500 2 G A 6 C5' G A 6 C4' -0.044 REMARK 500 2 G A 6 O4' G A 6 C4' 0.104 REMARK 500 2 G A 6 N7 G A 6 C8 -0.047 REMARK 500 2 C A 11 C5' C A 11 C4' 0.098 REMARK 500 2 C A 11 N3 C A 11 C4 -0.052 REMARK 500 2 G A 12 C2' G A 12 C1' -0.072 REMARK 500 2 G A 12 C5 G A 12 C6 -0.073 REMARK 500 2 G A 12 C6 G A 12 O6 -0.073 REMARK 500 2 C A 14 C2' C A 14 C1' -0.078 REMARK 500 2 C A 15 C4 C A 15 N4 -0.063 REMARK 500 2 C A 15 N1 C A 15 C6 0.036 REMARK 500 2 C A 15 C4 C A 15 C5 -0.059 REMARK 500 2 U A 18 C2' U A 18 C1' -0.127 REMARK 500 2 U A 18 N1 U A 18 C6 -0.071 REMARK 500 2 A A 22 C6 A A 22 N1 -0.045 REMARK 500 2 C A 27 N1 C A 27 C6 0.043 REMARK 500 2 C A 28 N1 C A 28 C6 0.060 REMARK 500 3 G A 4 C5 G A 4 N7 0.039 REMARK 500 3 U A 5 C5' U A 5 C4' 0.078 REMARK 500 3 U A 5 C2' U A 5 C1' -0.052 REMARK 500 3 C A 11 C5' C A 11 C4' 0.076 REMARK 500 3 C A 11 N3 C A 11 C4 -0.049 REMARK 500 3 G A 12 C5' G A 12 C4' 0.089 REMARK 500 3 G A 12 C4' G A 12 C3' 0.084 REMARK 500 3 G A 12 C2' G A 12 C1' -0.060 REMARK 500 3 G A 12 C5 G A 12 C6 -0.066 REMARK 500 3 G A 12 C6 G A 12 O6 -0.064 REMARK 500 3 C A 14 C2' C A 14 C1' -0.091 REMARK 500 3 C A 15 N1 C A 15 C6 0.040 REMARK 500 3 A A 16 C2' A A 16 C1' -0.061 REMARK 500 3 U A 18 C2' U A 18 C1' -0.126 REMARK 500 3 U A 18 N1 U A 18 C6 -0.075 REMARK 500 REMARK 500 THIS ENTRY HAS 361 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 A A 3 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 A A 3 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 G A 4 O4' - C1' - N9 ANGL. DEV. = 5.7 DEGREES REMARK 500 1 G A 4 C5 - N7 - C8 ANGL. DEV. = -3.6 DEGREES REMARK 500 1 G A 4 N7 - C8 - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 1 G A 4 N9 - C4 - C5 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 G A 4 N3 - C4 - N9 ANGL. DEV. = -4.0 DEGREES REMARK 500 1 G A 6 N7 - C8 - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 1 G A 6 C8 - N9 - C4 ANGL. DEV. = -3.2 DEGREES REMARK 500 1 G A 7 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 1 G A 7 N7 - C8 - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 1 G A 7 C8 - N9 - C4 ANGL. DEV. = -3.5 DEGREES REMARK 500 1 G A 9 N7 - C8 - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 1 G A 9 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 1 G A 12 C3' - C2' - C1' ANGL. DEV. = 6.5 DEGREES REMARK 500 1 G A 12 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES REMARK 500 1 G A 12 C5 - N7 - C8 ANGL. DEV. = -3.5 DEGREES REMARK 500 1 G A 12 N7 - C8 - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 1 G A 12 C8 - N9 - C4 ANGL. DEV. = -3.1 DEGREES REMARK 500 1 A A 13 N7 - C8 - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 1 A A 13 C8 - N9 - C4 ANGL. DEV. = -3.5 DEGREES REMARK 500 1 C A 14 C3' - C2' - C1' ANGL. DEV. = 5.2 DEGREES REMARK 500 1 A A 16 N7 - C8 - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 1 U A 18 C5' - C4' - O4' ANGL. DEV. = 5.6 DEGREES REMARK 500 1 U A 19 O4' - C1' - N1 ANGL. DEV. = 5.2 DEGREES REMARK 500 1 A A 20 N7 - C8 - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 1 A A 20 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 A A 21 C3' - C2' - C1' ANGL. DEV. = 5.3 DEGREES REMARK 500 1 A A 22 N7 - C8 - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 1 A A 23 N7 - C8 - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 A A 23 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 1 A A 24 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES REMARK 500 1 A A 24 N7 - C8 - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 1 A A 24 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 A A 26 N7 - C8 - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 1 C A 28 C5 - C6 - N1 ANGL. DEV. = -3.0 DEGREES REMARK 500 1 G A 29 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 G A 29 C8 - N9 - C4 ANGL. DEV. = -4.2 DEGREES REMARK 500 1 G A 30 N7 - C8 - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 G A 30 C8 - N9 - C4 ANGL. DEV. = -4.5 DEGREES REMARK 500 2 A A 3 C5' - C4' - O4' ANGL. DEV. = -14.9 DEGREES REMARK 500 2 A A 3 O4' - C1' - N9 ANGL. DEV. = 8.3 DEGREES REMARK 500 2 A A 3 N7 - C8 - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 2 A A 3 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 2 G A 4 C5' - C4' - C3' ANGL. DEV. = 10.3 DEGREES REMARK 500 2 G A 4 C5 - N7 - C8 ANGL. DEV. = -3.9 DEGREES REMARK 500 2 G A 4 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 A A 3 C3' - O3' - P ANGL. DEV. = 10.1 DEGREES REMARK 500 2 U A 5 N1 - C1' - C2' ANGL. DEV. = 8.2 DEGREES REMARK 500 2 G A 6 C5' - C4' - O4' ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 947 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 A A 3 0.07 SIDE_CHAIN REMARK 500 1 G A 4 0.07 SIDE_CHAIN REMARK 500 1 U A 5 0.08 SIDE_CHAIN REMARK 500 1 G A 6 0.07 SIDE_CHAIN REMARK 500 1 G A 7 0.09 SIDE_CHAIN REMARK 500 1 C A 10 0.07 SIDE_CHAIN REMARK 500 1 C A 11 0.07 SIDE_CHAIN REMARK 500 1 G A 12 0.07 SIDE_CHAIN REMARK 500 1 C A 14 0.09 SIDE_CHAIN REMARK 500 1 C A 15 0.08 SIDE_CHAIN REMARK 500 1 A A 16 0.07 SIDE_CHAIN REMARK 500 1 C A 17 0.08 SIDE_CHAIN REMARK 500 1 U A 18 0.11 SIDE_CHAIN REMARK 500 1 A A 21 0.05 SIDE_CHAIN REMARK 500 1 A A 23 0.06 SIDE_CHAIN REMARK 500 1 A A 24 0.06 SIDE_CHAIN REMARK 500 1 G A 29 0.09 SIDE_CHAIN REMARK 500 1 G A 30 0.08 SIDE_CHAIN REMARK 500 2 A A 3 0.06 SIDE_CHAIN REMARK 500 2 G A 4 0.07 SIDE_CHAIN REMARK 500 2 U A 5 0.09 SIDE_CHAIN REMARK 500 2 G A 6 0.07 SIDE_CHAIN REMARK 500 2 G A 7 0.09 SIDE_CHAIN REMARK 500 2 C A 10 0.07 SIDE_CHAIN REMARK 500 2 C A 11 0.06 SIDE_CHAIN REMARK 500 2 G A 12 0.07 SIDE_CHAIN REMARK 500 2 C A 14 0.08 SIDE_CHAIN REMARK 500 2 C A 15 0.09 SIDE_CHAIN REMARK 500 2 A A 16 0.09 SIDE_CHAIN REMARK 500 2 C A 17 0.07 SIDE_CHAIN REMARK 500 2 U A 18 0.11 SIDE_CHAIN REMARK 500 2 A A 22 0.05 SIDE_CHAIN REMARK 500 2 A A 24 0.06 SIDE_CHAIN REMARK 500 2 G A 29 0.08 SIDE_CHAIN REMARK 500 2 G A 30 0.07 SIDE_CHAIN REMARK 500 3 A A 3 0.09 SIDE_CHAIN REMARK 500 3 G A 4 0.07 SIDE_CHAIN REMARK 500 3 U A 5 0.07 SIDE_CHAIN REMARK 500 3 G A 6 0.08 SIDE_CHAIN REMARK 500 3 G A 7 0.07 SIDE_CHAIN REMARK 500 3 C A 10 0.07 SIDE_CHAIN REMARK 500 3 C A 11 0.06 SIDE_CHAIN REMARK 500 3 G A 12 0.08 SIDE_CHAIN REMARK 500 3 C A 14 0.09 SIDE_CHAIN REMARK 500 3 C A 15 0.09 SIDE_CHAIN REMARK 500 3 A A 16 0.08 SIDE_CHAIN REMARK 500 3 C A 17 0.07 SIDE_CHAIN REMARK 500 3 U A 18 0.09 SIDE_CHAIN REMARK 500 3 A A 23 0.08 SIDE_CHAIN REMARK 500 3 A A 26 0.07 SIDE_CHAIN REMARK 500 3 G A 29 0.08 SIDE_CHAIN REMARK 500 3 G A 30 0.07 SIDE_CHAIN REMARK 500 4 A A 3 0.07 SIDE_CHAIN REMARK 500 4 G A 4 0.07 SIDE_CHAIN REMARK 500 4 U A 5 0.08 SIDE_CHAIN REMARK 500 4 G A 6 0.07 SIDE_CHAIN REMARK 500 4 G A 7 0.07 SIDE_CHAIN REMARK 500 4 C A 10 0.08 SIDE_CHAIN REMARK 500 4 C A 11 0.08 SIDE_CHAIN REMARK 500 4 G A 12 0.08 SIDE_CHAIN REMARK 500 4 C A 14 0.08 SIDE_CHAIN REMARK 500 4 C A 15 0.09 SIDE_CHAIN REMARK 500 4 A A 16 0.07 SIDE_CHAIN REMARK 500 4 C A 17 0.07 SIDE_CHAIN REMARK 500 4 U A 18 0.09 SIDE_CHAIN REMARK 500 4 A A 21 0.07 SIDE_CHAIN REMARK 500 4 A A 24 0.05 SIDE_CHAIN REMARK 500 4 G A 29 0.09 SIDE_CHAIN REMARK 500 4 G A 30 0.07 SIDE_CHAIN REMARK 500 5 A A 3 0.08 SIDE_CHAIN REMARK 500 5 G A 4 0.07 SIDE_CHAIN REMARK 500 5 U A 5 0.07 SIDE_CHAIN REMARK 500 5 G A 6 0.07 SIDE_CHAIN REMARK 500 5 G A 7 0.07 SIDE_CHAIN REMARK 500 5 C A 10 0.08 SIDE_CHAIN REMARK 500 5 C A 11 0.08 SIDE_CHAIN REMARK 500 5 G A 12 0.07 SIDE_CHAIN REMARK 500 5 C A 14 0.08 SIDE_CHAIN REMARK 500 5 C A 15 0.07 SIDE_CHAIN REMARK 500 5 A A 16 0.06 SIDE_CHAIN REMARK 500 5 C A 17 0.08 SIDE_CHAIN REMARK 500 5 U A 18 0.11 SIDE_CHAIN REMARK 500 5 A A 21 0.06 SIDE_CHAIN REMARK 500 5 A A 23 0.06 SIDE_CHAIN REMARK 500 5 A A 24 0.09 SIDE_CHAIN REMARK 500 5 G A 29 0.09 SIDE_CHAIN REMARK 500 5 G A 30 0.08 SIDE_CHAIN REMARK 500 6 A A 3 0.07 SIDE_CHAIN REMARK 500 6 G A 4 0.07 SIDE_CHAIN REMARK 500 6 U A 5 0.08 SIDE_CHAIN REMARK 500 6 G A 6 0.07 SIDE_CHAIN REMARK 500 6 G A 7 0.07 SIDE_CHAIN REMARK 500 6 C A 10 0.09 SIDE_CHAIN REMARK 500 6 C A 11 0.07 SIDE_CHAIN REMARK 500 6 G A 12 0.07 SIDE_CHAIN REMARK 500 6 C A 14 0.08 SIDE_CHAIN REMARK 500 6 C A 15 0.09 SIDE_CHAIN REMARK 500 6 A A 16 0.08 SIDE_CHAIN REMARK 500 6 C A 17 0.05 SIDE_CHAIN REMARK 500 6 U A 18 0.11 SIDE_CHAIN REMARK 500 6 A A 23 0.06 SIDE_CHAIN REMARK 500 6 A A 24 0.07 SIDE_CHAIN REMARK 500 6 G A 29 0.07 SIDE_CHAIN REMARK 500 6 G A 30 0.09 SIDE_CHAIN REMARK 500 7 A A 3 0.08 SIDE_CHAIN REMARK 500 7 G A 4 0.08 SIDE_CHAIN REMARK 500 7 U A 5 0.07 SIDE_CHAIN REMARK 500 7 G A 6 0.07 SIDE_CHAIN REMARK 500 7 G A 7 0.07 SIDE_CHAIN REMARK 500 7 C A 10 0.07 SIDE_CHAIN REMARK 500 7 C A 11 0.08 SIDE_CHAIN REMARK 500 7 G A 12 0.07 SIDE_CHAIN REMARK 500 7 C A 14 0.09 SIDE_CHAIN REMARK 500 7 C A 15 0.07 SIDE_CHAIN REMARK 500 7 A A 16 0.06 SIDE_CHAIN REMARK 500 7 C A 17 0.07 SIDE_CHAIN REMARK 500 7 U A 18 0.10 SIDE_CHAIN REMARK 500 7 A A 21 0.05 SIDE_CHAIN REMARK 500 7 A A 23 0.05 SIDE_CHAIN REMARK 500 7 A A 24 0.08 SIDE_CHAIN REMARK 500 7 G A 29 0.09 SIDE_CHAIN REMARK 500 7 G A 30 0.07 SIDE_CHAIN REMARK 500 8 A A 3 0.09 SIDE_CHAIN REMARK 500 8 G A 4 0.07 SIDE_CHAIN REMARK 500 8 U A 5 0.07 SIDE_CHAIN REMARK 500 8 G A 6 0.08 SIDE_CHAIN REMARK 500 8 G A 7 0.08 SIDE_CHAIN REMARK 500 8 C A 10 0.07 SIDE_CHAIN REMARK 500 8 C A 11 0.08 SIDE_CHAIN REMARK 500 8 G A 12 0.07 SIDE_CHAIN REMARK 500 8 C A 14 0.08 SIDE_CHAIN REMARK 500 8 C A 15 0.10 SIDE_CHAIN REMARK 500 8 A A 16 0.07 SIDE_CHAIN REMARK 500 8 C A 17 0.07 SIDE_CHAIN REMARK 500 8 U A 18 0.11 SIDE_CHAIN REMARK 500 8 A A 23 0.06 SIDE_CHAIN REMARK 500 8 A A 24 0.08 SIDE_CHAIN REMARK 500 8 G A 29 0.09 SIDE_CHAIN REMARK 500 8 G A 30 0.07 SIDE_CHAIN REMARK 500 9 A A 3 0.08 SIDE_CHAIN REMARK 500 9 G A 4 0.07 SIDE_CHAIN REMARK 500 9 U A 5 0.08 SIDE_CHAIN REMARK 500 9 G A 6 0.07 SIDE_CHAIN REMARK 500 9 G A 7 0.07 SIDE_CHAIN REMARK 500 9 C A 10 0.08 SIDE_CHAIN REMARK 500 9 C A 11 0.08 SIDE_CHAIN REMARK 500 9 G A 12 0.07 SIDE_CHAIN REMARK 500 9 C A 14 0.08 SIDE_CHAIN REMARK 500 9 C A 15 0.10 SIDE_CHAIN REMARK 500 9 A A 16 0.07 SIDE_CHAIN REMARK 500 9 U A 18 0.09 SIDE_CHAIN REMARK 500 9 A A 20 0.06 SIDE_CHAIN REMARK 500 9 A A 23 0.07 SIDE_CHAIN REMARK 500 9 A A 24 0.06 SIDE_CHAIN REMARK 500 9 G A 29 0.09 SIDE_CHAIN REMARK 500 9 G A 30 0.08 SIDE_CHAIN REMARK 500 10 A A 3 0.08 SIDE_CHAIN REMARK 500 10 G A 4 0.08 SIDE_CHAIN REMARK 500 10 U A 5 0.08 SIDE_CHAIN REMARK 500 10 G A 6 0.08 SIDE_CHAIN REMARK 500 10 G A 7 0.07 SIDE_CHAIN REMARK 500 10 C A 10 0.08 SIDE_CHAIN REMARK 500 10 C A 11 0.07 SIDE_CHAIN REMARK 500 10 G A 12 0.07 SIDE_CHAIN REMARK 500 10 C A 14 0.07 SIDE_CHAIN REMARK 500 10 C A 15 0.07 SIDE_CHAIN REMARK 500 10 A A 16 0.07 SIDE_CHAIN REMARK 500 10 C A 17 0.07 SIDE_CHAIN REMARK 500 10 U A 18 0.09 SIDE_CHAIN REMARK 500 10 A A 21 0.07 SIDE_CHAIN REMARK 500 10 A A 23 0.10 SIDE_CHAIN REMARK 500 10 G A 29 0.07 SIDE_CHAIN REMARK 500 10 G A 30 0.09 SIDE_CHAIN REMARK 500 11 A A 3 0.07 SIDE_CHAIN REMARK 500 11 G A 4 0.07 SIDE_CHAIN REMARK 500 11 U A 5 0.09 SIDE_CHAIN REMARK 500 11 G A 6 0.08 SIDE_CHAIN REMARK 500 11 G A 7 0.07 SIDE_CHAIN REMARK 500 11 C A 10 0.07 SIDE_CHAIN REMARK 500 11 C A 11 0.06 SIDE_CHAIN REMARK 500 11 G A 12 0.07 SIDE_CHAIN REMARK 500 11 C A 14 0.09 SIDE_CHAIN REMARK 500 11 C A 15 0.10 SIDE_CHAIN REMARK 500 11 A A 16 0.08 SIDE_CHAIN REMARK 500 11 C A 17 0.09 SIDE_CHAIN REMARK 500 11 U A 18 0.11 SIDE_CHAIN REMARK 500 11 A A 22 0.08 SIDE_CHAIN REMARK 500 11 A A 24 0.06 SIDE_CHAIN REMARK 500 11 G A 29 0.09 SIDE_CHAIN REMARK 500 11 G A 30 0.08 SIDE_CHAIN REMARK 500 12 A A 3 0.07 SIDE_CHAIN REMARK 500 12 G A 4 0.07 SIDE_CHAIN REMARK 500 12 U A 5 0.08 SIDE_CHAIN REMARK 500 12 G A 6 0.07 SIDE_CHAIN REMARK 500 12 G A 7 0.07 SIDE_CHAIN REMARK 500 12 C A 10 0.07 SIDE_CHAIN REMARK 500 12 C A 11 0.07 SIDE_CHAIN REMARK 500 12 G A 12 0.07 SIDE_CHAIN REMARK 500 12 C A 14 0.07 SIDE_CHAIN REMARK 500 12 C A 15 0.07 SIDE_CHAIN REMARK 500 12 A A 16 0.06 SIDE_CHAIN REMARK 500 12 C A 17 0.07 SIDE_CHAIN REMARK 500 12 U A 18 0.09 SIDE_CHAIN REMARK 500 12 A A 23 0.07 SIDE_CHAIN REMARK 500 12 A A 24 0.07 SIDE_CHAIN REMARK 500 12 G A 29 0.08 SIDE_CHAIN REMARK 500 12 G A 30 0.07 SIDE_CHAIN REMARK 500 13 A A 3 0.07 SIDE_CHAIN REMARK 500 13 G A 4 0.08 SIDE_CHAIN REMARK 500 13 U A 5 0.08 SIDE_CHAIN REMARK 500 13 G A 6 0.07 SIDE_CHAIN REMARK 500 13 G A 7 0.06 SIDE_CHAIN REMARK 500 13 C A 10 0.07 SIDE_CHAIN REMARK 500 13 C A 11 0.06 SIDE_CHAIN REMARK 500 13 G A 12 0.07 SIDE_CHAIN REMARK 500 13 C A 14 0.08 SIDE_CHAIN REMARK 500 13 C A 15 0.07 SIDE_CHAIN REMARK 500 13 A A 16 0.05 SIDE_CHAIN REMARK 500 13 C A 17 0.07 SIDE_CHAIN REMARK 500 13 U A 18 0.09 SIDE_CHAIN REMARK 500 13 A A 23 0.09 SIDE_CHAIN REMARK 500 13 A A 24 0.06 SIDE_CHAIN REMARK 500 13 G A 29 0.09 SIDE_CHAIN REMARK 500 13 G A 30 0.08 SIDE_CHAIN REMARK 500 14 A A 3 0.08 SIDE_CHAIN REMARK 500 14 G A 4 0.07 SIDE_CHAIN REMARK 500 14 U A 5 0.08 SIDE_CHAIN REMARK 500 14 G A 6 0.07 SIDE_CHAIN REMARK 500 14 G A 7 0.07 SIDE_CHAIN REMARK 500 14 C A 10 0.07 SIDE_CHAIN REMARK 500 14 C A 11 0.07 SIDE_CHAIN REMARK 500 14 G A 12 0.07 SIDE_CHAIN REMARK 500 14 C A 14 0.09 SIDE_CHAIN REMARK 500 14 C A 15 0.10 SIDE_CHAIN REMARK 500 14 A A 16 0.07 SIDE_CHAIN REMARK 500 14 C A 17 0.08 SIDE_CHAIN REMARK 500 14 U A 18 0.09 SIDE_CHAIN REMARK 500 14 A A 21 0.07 SIDE_CHAIN REMARK 500 14 A A 23 0.05 SIDE_CHAIN REMARK 500 14 A A 24 0.07 SIDE_CHAIN REMARK 500 14 G A 29 0.09 SIDE_CHAIN REMARK 500 14 G A 30 0.09 SIDE_CHAIN REMARK 500 15 A A 3 0.07 SIDE_CHAIN REMARK 500 15 G A 4 0.07 SIDE_CHAIN REMARK 500 15 U A 5 0.09 SIDE_CHAIN REMARK 500 15 G A 6 0.08 SIDE_CHAIN REMARK 500 15 G A 7 0.07 SIDE_CHAIN REMARK 500 15 C A 10 0.07 SIDE_CHAIN REMARK 500 15 C A 11 0.08 SIDE_CHAIN REMARK 500 15 G A 12 0.07 SIDE_CHAIN REMARK 500 15 C A 14 0.07 SIDE_CHAIN REMARK 500 15 C A 15 0.07 SIDE_CHAIN REMARK 500 15 A A 16 0.06 SIDE_CHAIN REMARK 500 15 C A 17 0.06 SIDE_CHAIN REMARK 500 15 U A 18 0.09 SIDE_CHAIN REMARK 500 15 A A 23 0.06 SIDE_CHAIN REMARK 500 15 A A 24 0.05 SIDE_CHAIN REMARK 500 15 C A 27 0.23 SIDE_CHAIN REMARK 500 15 G A 29 0.09 SIDE_CHAIN REMARK 500 15 G A 30 0.08 SIDE_CHAIN REMARK 500 16 A A 3 0.08 SIDE_CHAIN REMARK 500 16 G A 4 0.07 SIDE_CHAIN REMARK 500 16 U A 5 0.07 SIDE_CHAIN REMARK 500 16 G A 6 0.07 SIDE_CHAIN REMARK 500 16 G A 7 0.08 SIDE_CHAIN REMARK 500 16 C A 10 0.06 SIDE_CHAIN REMARK 500 16 G A 12 0.08 SIDE_CHAIN REMARK 500 16 C A 14 0.08 SIDE_CHAIN REMARK 500 16 C A 15 0.09 SIDE_CHAIN REMARK 500 16 A A 16 0.07 SIDE_CHAIN REMARK 500 16 C A 17 0.07 SIDE_CHAIN REMARK 500 16 U A 18 0.09 SIDE_CHAIN REMARK 500 16 A A 21 0.05 SIDE_CHAIN REMARK 500 16 A A 24 0.08 SIDE_CHAIN REMARK 500 16 G A 29 0.08 SIDE_CHAIN REMARK 500 16 G A 30 0.07 SIDE_CHAIN REMARK 500 17 A A 3 0.09 SIDE_CHAIN REMARK 500 17 G A 4 0.07 SIDE_CHAIN REMARK 500 17 U A 5 0.08 SIDE_CHAIN REMARK 500 17 G A 6 0.08 SIDE_CHAIN REMARK 500 17 G A 7 0.07 SIDE_CHAIN REMARK 500 17 C A 10 0.07 SIDE_CHAIN REMARK 500 17 C A 11 0.08 SIDE_CHAIN REMARK 500 17 G A 12 0.07 SIDE_CHAIN REMARK 500 17 C A 14 0.07 SIDE_CHAIN REMARK 500 17 C A 15 0.07 SIDE_CHAIN REMARK 500 17 A A 16 0.05 SIDE_CHAIN REMARK 500 17 C A 17 0.07 SIDE_CHAIN REMARK 500 17 U A 18 0.09 SIDE_CHAIN REMARK 500 17 A A 23 0.05 SIDE_CHAIN REMARK 500 17 A A 24 0.08 SIDE_CHAIN REMARK 500 17 G A 29 0.09 SIDE_CHAIN REMARK 500 17 G A 30 0.08 SIDE_CHAIN REMARK 500 18 A A 3 0.09 SIDE_CHAIN REMARK 500 18 G A 4 0.07 SIDE_CHAIN REMARK 500 18 U A 5 0.07 SIDE_CHAIN REMARK 500 18 G A 6 0.08 SIDE_CHAIN REMARK 500 18 G A 7 0.09 SIDE_CHAIN REMARK 500 18 C A 10 0.06 SIDE_CHAIN REMARK 500 18 C A 11 0.08 SIDE_CHAIN REMARK 500 18 G A 12 0.08 SIDE_CHAIN REMARK 500 18 C A 14 0.09 SIDE_CHAIN REMARK 500 18 C A 15 0.07 SIDE_CHAIN REMARK 500 18 A A 16 0.06 SIDE_CHAIN REMARK 500 18 C A 17 0.07 SIDE_CHAIN REMARK 500 18 U A 18 0.11 SIDE_CHAIN REMARK 500 18 A A 23 0.08 SIDE_CHAIN REMARK 500 18 G A 29 0.09 SIDE_CHAIN REMARK 500 18 G A 30 0.07 SIDE_CHAIN REMARK 500 19 A A 3 0.05 SIDE_CHAIN REMARK 500 19 G A 4 0.08 SIDE_CHAIN REMARK 500 19 U A 5 0.07 SIDE_CHAIN REMARK 500 19 G A 6 0.07 SIDE_CHAIN REMARK 500 19 G A 7 0.07 SIDE_CHAIN REMARK 500 19 C A 10 0.06 SIDE_CHAIN REMARK 500 19 G A 12 0.08 SIDE_CHAIN REMARK 500 19 C A 14 0.09 SIDE_CHAIN REMARK 500 19 C A 15 0.10 SIDE_CHAIN REMARK 500 19 A A 16 0.06 SIDE_CHAIN REMARK 500 19 C A 17 0.08 SIDE_CHAIN REMARK 500 19 U A 18 0.09 SIDE_CHAIN REMARK 500 19 A A 23 0.07 SIDE_CHAIN REMARK 500 19 A A 24 0.09 SIDE_CHAIN REMARK 500 19 G A 29 0.08 SIDE_CHAIN REMARK 500 19 G A 30 0.07 SIDE_CHAIN REMARK 500 20 A A 3 0.07 SIDE_CHAIN REMARK 500 20 G A 4 0.07 SIDE_CHAIN REMARK 500 20 U A 5 0.08 SIDE_CHAIN REMARK 500 20 G A 6 0.07 SIDE_CHAIN REMARK 500 20 G A 7 0.08 SIDE_CHAIN REMARK 500 20 C A 10 0.07 SIDE_CHAIN REMARK 500 20 C A 11 0.06 SIDE_CHAIN REMARK 500 20 G A 12 0.07 SIDE_CHAIN REMARK 500 20 C A 14 0.08 SIDE_CHAIN REMARK 500 20 C A 15 0.07 SIDE_CHAIN REMARK 500 20 A A 16 0.07 SIDE_CHAIN REMARK 500 20 C A 17 0.07 SIDE_CHAIN REMARK 500 20 U A 18 0.09 SIDE_CHAIN REMARK 500 20 A A 21 0.07 SIDE_CHAIN REMARK 500 20 A A 23 0.08 SIDE_CHAIN REMARK 500 20 A A 24 0.08 SIDE_CHAIN REMARK 500 20 A A 26 0.06 SIDE_CHAIN REMARK 500 20 G A 29 0.09 SIDE_CHAIN REMARK 500 20 G A 30 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YG4 RELATED DB: PDB REMARK 900 THE SAME SEQUENCE, AVERAGED MINIMIZED STRUCTURE

DBREF 1YG3 A 3 30 PDB 1YG3 1YG3 3 30

SEQRES 1 A 28 A G U G G CH G C C G A C C SEQRES 2 A 28 A C U U A A A A A C A C C SEQRES 3 A 28 G G

MODRES 1YG3 CH A 8 C N3-PROTONATED CYTIDINE-5'-MONOPHOSPHATE

HET CH A 8 32

HETNAM CH N3-PROTONATED CYTIDINE-5'-MONOPHOSPHATE

FORMUL 1 CH C9 H15 N3 O8 P 1+

LINK O3' G A 7 P CH A 8 1555 1555 1.60 LINK O3' CH A 8 P G A 9 1555 1555 1.62

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000