10 20 30 40 50 60 70 80 1YFB - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION 31-DEC-04 1YFB
TITLE THE SOLUTION STRUCTURE OF THE N-DOMAIN OF THE TRANSCRIPTION TITLE 2 FACTOR ABRB
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSITION STATE REGULATORY PROTEIN ABRB; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: ABRB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET30B
KEYWDS NMR; HOMODIMER; BIOINFORMATICS; SWAPPED-HAIRPIN BARREL, KEYWDS 2 TRANSCRIPTION
EXPDTA SOLUTION NMR
MDLTYP MINIMIZED AVERAGE
AUTHOR V.TRUFFAULT,S.DJURANOVIC,M.COLES
REVDAT 3 24-FEB-09 1YFB 1 VERSN REVDAT 2 21-JUN-05 1YFB 1 JRNL REVDAT 1 12-APR-05 1YFB 0
JRNL AUTH M.COLES,S.DJURANOVIC,J.SODING,T.FRICKEY,K.KORETKE, JRNL AUTH 2 V.TRUFFAULT,J.MARTIN,A.N.LUPAS JRNL TITL ABRB-LIKE TRANSCRIPTION FACTORS ASSUME A SWAPPED JRNL TITL 2 HAIRPIN FOLD THAT IS EVOLUTIONARILY RELATED TO JRNL TITL 3 DOUBLE-PSI BETA BARRELS. JRNL REF STRUCTURE V. 13 919 2005 JRNL REFN ISSN 0969-2126 JRNL PMID 15939023 JRNL DOI 10.1016/J.STR.2005.03.017
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH-2.9.7 REMARK 3 AUTHORS : BRUNGER, A.T. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1YFB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-05. REMARK 100 THE RCSB ID CODE IS RCSB031451.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 305 REMARK 210 PH : 5.8 REMARK 210 IONIC STRENGTH : 80MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5MM ABRB-N; 20MM PHOSPHATE REMARK 210 BUFFER; 80MM KCL; 0.5MM ABRB-N REMARK 210 U-15N; 20MM PHOSPHATE BUFFER; REMARK 210 80MM KCL; 0.25MM ABRB-N U-15N, REMARK 210 0.25MM ABRB-N U-13C; 20MM REMARK 210 PHOSPHATE BUFFER; 80MM KCL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 2D REMARK 210 NOESY, HNHA, 13C-FILTERED/ REMARK 210 EDITED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 750 MHZ, 900 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH-2.9.7, XWINNMR REMARK 210 3.5, NMRVIEW 5.0.15 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : MINIMIZED AVERAGE STRUCTURE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 MET A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 MET B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 HIS B 1
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 33 -4.61 74.65 REMARK 500 GLU A 43 14.47 58.27 REMARK 500 LYS B 33 -4.81 74.80 REMARK 500 GLU B 43 14.39 58.12 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EKT RELATED DB: PDB REMARK 900 RELATED ID: 1YSF RELATED DB: PDB REMARK 900 ENSEMBLE OF 20 STRUCTURES
DBREF 1YFB A 2 53 UNP P08874 ABRB_BACSU 2 53 DBREF 1YFB B 2 53 UNP P08874 ABRB_BACSU 2 53
SEQADV 1YFB MET A -5 UNP P08874 EXPRESSION TAG SEQADV 1YFB HIS A -4 UNP P08874 EXPRESSION TAG SEQADV 1YFB HIS A -3 UNP P08874 EXPRESSION TAG SEQADV 1YFB HIS A -2 UNP P08874 EXPRESSION TAG SEQADV 1YFB HIS A -1 UNP P08874 EXPRESSION TAG SEQADV 1YFB HIS A 0 UNP P08874 EXPRESSION TAG SEQADV 1YFB HIS A 1 UNP P08874 EXPRESSION TAG SEQADV 1YFB MET B -5 UNP P08874 EXPRESSION TAG SEQADV 1YFB HIS B -4 UNP P08874 EXPRESSION TAG SEQADV 1YFB HIS B -3 UNP P08874 EXPRESSION TAG SEQADV 1YFB HIS B -2 UNP P08874 EXPRESSION TAG SEQADV 1YFB HIS B -1 UNP P08874 EXPRESSION TAG SEQADV 1YFB HIS B 0 UNP P08874 EXPRESSION TAG SEQADV 1YFB HIS B 1 UNP P08874 EXPRESSION TAG
SEQRES 1 A 59 MET HIS HIS HIS HIS HIS HIS PHE MET LYS SER THR GLY SEQRES 2 A 59 ILE VAL ARG LYS VAL ASP GLU LEU GLY ARG VAL VAL ILE SEQRES 3 A 59 PRO ILE GLU LEU ARG ARG THR LEU GLY ILE ALA GLU LYS SEQRES 4 A 59 ASP ALA LEU GLU ILE TYR VAL ASP ASP GLU LYS ILE ILE SEQRES 5 A 59 LEU LYS LYS TYR LYS PRO ASN SEQRES 1 B 59 MET HIS HIS HIS HIS HIS HIS PHE MET LYS SER THR GLY SEQRES 2 B 59 ILE VAL ARG LYS VAL ASP GLU LEU GLY ARG VAL VAL ILE SEQRES 3 B 59 PRO ILE GLU LEU ARG ARG THR LEU GLY ILE ALA GLU LYS SEQRES 4 B 59 ASP ALA LEU GLU ILE TYR VAL ASP ASP GLU LYS ILE ILE SEQRES 5 B 59 LEU LYS LYS TYR LYS PRO ASN
HELIX 1 1 PRO A 21 LEU A 28 1 8 HELIX 2 2 PRO B 21 LEU B 28 1 8
SHEET 1 A 6 ILE A 8 LYS A 11 0 SHEET 2 A 6 ALA B 35 ASP B 41 -1 O ILE B 38 N ILE A 8 SHEET 3 A 6 LYS B 44 LYS B 49 -1 O LYS B 44 N ASP B 41 SHEET 4 A 6 LYS A 44 LYS A 49 -1 N LEU A 47 O ILE B 45 SHEET 5 A 6 ALA A 35 ASP A 41 -1 N ASP A 41 O LYS A 44 SHEET 6 A 6 ILE B 8 LYS B 11 -1 O ILE B 8 N ILE A 38 SHEET 1 B 2 ARG A 17 VAL A 19 0 SHEET 2 B 2 ARG B 17 VAL B 19 -1 O VAL B 18 N VAL A 18
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000