10 20 30 40 50 60 70 80 1YDW - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 26-DEC-04 1YDW
TITLE X-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA TITLE 2 AT4G09670
COMPND MOL_ID: 1; COMPND 2 MOLECULE: AX110P-LIKE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT4G09670; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834 P(RARE2); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVP-17
KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, KEYWDS 2 CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS, CESG, AT4G09670, KEYWDS 3 UNKNOWN FUNCTION
EXPDTA X-RAY DIFFRACTION
AUTHOR G.E.WESENBERG,G.N.PHILLIPS JR.,E.BITTO,C.A.BINGMAN, AUTHOR 2 S.T.M.ALLARD,CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS AUTHOR 3 (CESG)
REVDAT 3 24-FEB-09 1YDW 1 VERSN REVDAT 2 28-NOV-06 1YDW 1 REMARK REVDAT 1 11-JAN-05 1YDW 0
JRNL AUTH CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) JRNL TITL X-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS JRNL TITL 2 THALIANA AT4G09670 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 27390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1472 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1651 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5340 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.38900 REMARK 3 B22 (A**2) : 2.06800 REMARK 3 B33 (A**2) : -3.45700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.552 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.321 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.229 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.133 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.873 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5453 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7408 ; 2.050 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 689 ; 8.041 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 224 ;40.318 ;24.554 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 919 ;19.930 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;21.043 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 854 ; 0.162 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4061 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2846 ; 0.277 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3753 ; 0.326 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 289 ; 0.216 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.238 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.340 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3550 ; 1.757 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5566 ; 3.216 ; 4.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2195 ; 5.826 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1842 ; 7.878 ; 8.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS, SELENIUM C COEFFICIENT FOR STRUCTURE FACTOR REMARK 3 CALCULATION SET TO -9.0000, MOLPROBITY USED TO ASSIST IN FINAL REMARK 3 MODEL BUILDING
REMARK 4 REMARK 4 1YDW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-DEC-04. REMARK 100 THE RCSB ID CODE IS RCSB031414.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97927 REMARK 200 MONOCHROMATOR : DIAMOND (111) DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : BENT CYLINDRICAL SI-MIRROR REMARK 200 (RH COATING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29008 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.488 REMARK 200 RESOLUTION RANGE LOW (A) : 33.749 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 13.400 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.2450 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.5 REMARK 200 DATA REDUNDANCY IN SHELL : 8.60 REMARK 200 R MERGE FOR SHELL (I) : 0.29800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.321 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: UNMODELED DENSITY APPEARS IN BOTH SUBUNITS IN THE REMARK 200 REGION BETWEEN LYS 43 TYR 63 PROBABLY DUE TO NADP.
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML PROTEIN, 15% PEG4K, 0.168 REMARK 280 M SODIUM CHLORIDE, 0.050 M PIPES, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K, PH 6.5
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.09850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.87400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.83150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.87400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.09850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.83150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 GLU A 4 REMARK 465 THR A 5 REMARK 465 GLY A 319 REMARK 465 GLU A 320 REMARK 465 ILE A 321 REMARK 465 LYS A 322 REMARK 465 ASN A 323 REMARK 465 ASN A 324 REMARK 465 GLY A 325 REMARK 465 ALA A 326 REMARK 465 LYS A 327 REMARK 465 PRO A 328 REMARK 465 ASP A 329 REMARK 465 GLY A 330 REMARK 465 GLY A 361 REMARK 465 ARG A 362 REMARK 465 SER B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 GLU B 4 REMARK 465 THR B 5 REMARK 465 ARG B 316 REMARK 465 LEU B 317 REMARK 465 VAL B 318 REMARK 465 GLY B 319 REMARK 465 GLU B 320 REMARK 465 GLY B 361 REMARK 465 ARG B 362
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE LYS A 176 O HOH A 391 1.96 REMARK 500 NZ LYS A 102 O HOH A 412 2.01 REMARK 500 O HOH A 363 O HOH A 411 2.05 REMARK 500 O VAL A 156 O HOH A 421 2.08 REMARK 500 OE1 GLU B 250 ND1 HIS B 263 2.11 REMARK 500 O HOH A 408 O HOH A 410 2.17 REMARK 500 O HOH B 381 O HOH B 384 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 139 CB - CG - CD1 ANGL. DEV. = -14.1 DEGREES REMARK 500 ALA A 282 N - CA - C ANGL. DEV. = -20.6 DEGREES REMARK 500 TRP A 283 N - CA - C ANGL. DEV. = 16.7 DEGREES REMARK 500 LEU A 317 CA - CB - CG ANGL. DEV. = 17.1 DEGREES REMARK 500 ARG B 235 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 235 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 14 67.26 -101.37 REMARK 500 ALA A 24 -71.14 -57.99 REMARK 500 GLU A 42 -74.57 -38.33 REMARK 500 SER A 56 6.03 -67.34 REMARK 500 LYS A 58 97.47 -65.63 REMARK 500 PRO A 78 46.16 -83.75 REMARK 500 ALA A 120 -35.02 -36.97 REMARK 500 ARG A 136 -30.40 -38.20 REMARK 500 LEU A 140 -43.04 157.12 REMARK 500 PHE A 150 -32.54 -147.36 REMARK 500 LEU A 179 -102.55 -108.23 REMARK 500 LEU A 198 -75.38 -57.01 REMARK 500 PRO A 205 -172.96 -62.72 REMARK 500 ASN A 246 139.37 -37.64 REMARK 500 THR A 256 -39.97 -36.78 REMARK 500 ASP A 264 -128.63 -107.50 REMARK 500 PHE A 265 -53.06 116.26 REMARK 500 ILE A 267 91.08 62.39 REMARK 500 LYS A 281 136.79 32.59 REMARK 500 ALA A 282 148.34 157.25 REMARK 500 TRP A 283 119.44 121.57 REMARK 500 ALA A 315 25.08 -53.09 REMARK 500 LEU A 317 -128.44 89.39 REMARK 500 LYS A 352 37.38 -89.39 REMARK 500 LEU A 359 51.45 -97.02 REMARK 500 CYS B 14 53.56 -93.78 REMARK 500 ALA B 28 -121.54 41.49 REMARK 500 PRO B 78 48.90 -81.71 REMARK 500 LEU B 179 -101.49 -116.56 REMARK 500 TRP B 190 -61.33 -17.87 REMARK 500 ASN B 200 34.94 -99.28 REMARK 500 ASN B 201 26.21 47.92 REMARK 500 PHE B 202 13.79 80.39 REMARK 500 PRO B 212 156.77 -49.31 REMARK 500 ASN B 246 130.10 -19.43 REMARK 500 LEU B 247 117.26 -39.02 REMARK 500 ASN B 285 170.04 -58.79 REMARK 500 LYS B 352 28.94 -72.02 REMARK 500 TYR B 354 34.64 80.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MSE A 130 TRP A 131 -149.86 REMARK 500 ALA A 282 TRP A 283 -39.69 REMARK 500 LEU A 317 VAL A 318 -140.30 REMARK 500 HIS B 26 LEU B 27 145.61 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.19812 RELATED DB: TARGETDB
DBREF 1YDW A 1 362 UNP Q9SZ83 Y4967_ARATH 1 362 DBREF 1YDW B 1 362 UNP Q9SZ83 Y4967_ARATH 1 362
SEQADV 1YDW SER A 1 UNP Q9SZ83 MET 1 CLONING ARTIFACT SEQADV 1YDW MSE A 12 UNP Q9SZ83 MET 12 MODIFIED RESIDUE SEQADV 1YDW MSE A 106 UNP Q9SZ83 MET 106 MODIFIED RESIDUE SEQADV 1YDW MSE A 126 UNP Q9SZ83 MET 126 MODIFIED RESIDUE SEQADV 1YDW MSE A 130 UNP Q9SZ83 MET 130 MODIFIED RESIDUE SEQADV 1YDW MSE A 249 UNP Q9SZ83 MET 249 MODIFIED RESIDUE SEQADV 1YDW MSE A 310 UNP Q9SZ83 MET 310 MODIFIED RESIDUE SEQADV 1YDW SER B 1 UNP Q9SZ83 MET 1 CLONING ARTIFACT SEQADV 1YDW MSE B 12 UNP Q9SZ83 MET 12 MODIFIED RESIDUE SEQADV 1YDW MSE B 106 UNP Q9SZ83 MET 106 MODIFIED RESIDUE SEQADV 1YDW MSE B 126 UNP Q9SZ83 MET 126 MODIFIED RESIDUE SEQADV 1YDW MSE B 130 UNP Q9SZ83 MET 130 MODIFIED RESIDUE SEQADV 1YDW MSE B 249 UNP Q9SZ83 MET 249 MODIFIED RESIDUE SEQADV 1YDW MSE B 310 UNP Q9SZ83 MET 310 MODIFIED RESIDUE
SEQRES 1 A 362 SER ALA THR GLU THR GLN ILE ARG ILE GLY VAL MSE GLY SEQRES 2 A 362 CYS ALA ASP ILE ALA ARG LYS VAL SER ARG ALA ILE HIS SEQRES 3 A 362 LEU ALA PRO ASN ALA THR ILE SER GLY VAL ALA SER ARG SEQRES 4 A 362 SER LEU GLU LYS ALA LYS ALA PHE ALA THR ALA ASN ASN SEQRES 5 A 362 TYR PRO GLU SER THR LYS ILE HIS GLY SER TYR GLU SER SEQRES 6 A 362 LEU LEU GLU ASP PRO GLU ILE ASP ALA LEU TYR VAL PRO SEQRES 7 A 362 LEU PRO THR SER LEU HIS VAL GLU TRP ALA ILE LYS ALA SEQRES 8 A 362 ALA GLU LYS GLY LYS HIS ILE LEU LEU GLU LYS PRO VAL SEQRES 9 A 362 ALA MSE ASN VAL THR GLU PHE ASP LYS ILE VAL ASP ALA SEQRES 10 A 362 CYS GLU ALA ASN GLY VAL GLN ILE MSE ASP GLY THR MSE SEQRES 11 A 362 TRP VAL HIS ASN PRO ARG THR ALA LEU LEU LYS GLU PHE SEQRES 12 A 362 LEU SER ASP SER GLU ARG PHE GLY GLN LEU LYS THR VAL SEQRES 13 A 362 GLN SER CYS PHE SER PHE ALA GLY ASP GLU ASP PHE LEU SEQRES 14 A 362 LYS ASN ASP ILE ARG VAL LYS PRO GLY LEU ASP GLY LEU SEQRES 15 A 362 GLY ALA LEU GLY ASP ALA GLY TRP TYR ALA ILE ARG ALA SEQRES 16 A 362 THR LEU LEU ALA ASN ASN PHE GLU LEU PRO LYS THR VAL SEQRES 17 A 362 THR ALA PHE PRO GLY ALA VAL LEU ASN GLU ALA GLY VAL SEQRES 18 A 362 ILE LEU SER CYS GLY ALA SER LEU SER TRP GLU ASP GLY SEQRES 19 A 362 ARG THR ALA THR ILE TYR CYS SER PHE LEU ALA ASN LEU SEQRES 20 A 362 THR MSE GLU ILE THR ALA ILE GLY THR LYS GLY THR LEU SEQRES 21 A 362 ARG VAL HIS ASP PHE ILE ILE PRO TYR LYS GLU THR GLU SEQRES 22 A 362 ALA SER PHE THR THR SER THR LYS ALA TRP PHE ASN ASP SEQRES 23 A 362 LEU VAL THR ALA TRP VAL SER PRO PRO SER GLU HIS THR SEQRES 24 A 362 VAL LYS THR GLU LEU PRO GLN GLU ALA CYS MSE VAL ARG SEQRES 25 A 362 GLU PHE ALA ARG LEU VAL GLY GLU ILE LYS ASN ASN GLY SEQRES 26 A 362 ALA LYS PRO ASP GLY TYR TRP PRO SER ILE SER ARG LYS SEQRES 27 A 362 THR GLN LEU VAL VAL ASP ALA VAL LYS GLU SER VAL ASP SEQRES 28 A 362 LYS ASN TYR GLN GLN ILE SER LEU SER GLY ARG SEQRES 1 B 362 SER ALA THR GLU THR GLN ILE ARG ILE GLY VAL MSE GLY SEQRES 2 B 362 CYS ALA ASP ILE ALA ARG LYS VAL SER ARG ALA ILE HIS SEQRES 3 B 362 LEU ALA PRO ASN ALA THR ILE SER GLY VAL ALA SER ARG SEQRES 4 B 362 SER LEU GLU LYS ALA LYS ALA PHE ALA THR ALA ASN ASN SEQRES 5 B 362 TYR PRO GLU SER THR LYS ILE HIS GLY SER TYR GLU SER SEQRES 6 B 362 LEU LEU GLU ASP PRO GLU ILE ASP ALA LEU TYR VAL PRO SEQRES 7 B 362 LEU PRO THR SER LEU HIS VAL GLU TRP ALA ILE LYS ALA SEQRES 8 B 362 ALA GLU LYS GLY LYS HIS ILE LEU LEU GLU LYS PRO VAL SEQRES 9 B 362 ALA MSE ASN VAL THR GLU PHE ASP LYS ILE VAL ASP ALA SEQRES 10 B 362 CYS GLU ALA ASN GLY VAL GLN ILE MSE ASP GLY THR MSE SEQRES 11 B 362 TRP VAL HIS ASN PRO ARG THR ALA LEU LEU LYS GLU PHE SEQRES 12 B 362 LEU SER ASP SER GLU ARG PHE GLY GLN LEU LYS THR VAL SEQRES 13 B 362 GLN SER CYS PHE SER PHE ALA GLY ASP GLU ASP PHE LEU SEQRES 14 B 362 LYS ASN ASP ILE ARG VAL LYS PRO GLY LEU ASP GLY LEU SEQRES 15 B 362 GLY ALA LEU GLY ASP ALA GLY TRP TYR ALA ILE ARG ALA SEQRES 16 B 362 THR LEU LEU ALA ASN ASN PHE GLU LEU PRO LYS THR VAL SEQRES 17 B 362 THR ALA PHE PRO GLY ALA VAL LEU ASN GLU ALA GLY VAL SEQRES 18 B 362 ILE LEU SER CYS GLY ALA SER LEU SER TRP GLU ASP GLY SEQRES 19 B 362 ARG THR ALA THR ILE TYR CYS SER PHE LEU ALA ASN LEU SEQRES 20 B 362 THR MSE GLU ILE THR ALA ILE GLY THR LYS GLY THR LEU SEQRES 21 B 362 ARG VAL HIS ASP PHE ILE ILE PRO TYR LYS GLU THR GLU SEQRES 22 B 362 ALA SER PHE THR THR SER THR LYS ALA TRP PHE ASN ASP SEQRES 23 B 362 LEU VAL THR ALA TRP VAL SER PRO PRO SER GLU HIS THR SEQRES 24 B 362 VAL LYS THR GLU LEU PRO GLN GLU ALA CYS MSE VAL ARG SEQRES 25 B 362 GLU PHE ALA ARG LEU VAL GLY GLU ILE LYS ASN ASN GLY SEQRES 26 B 362 ALA LYS PRO ASP GLY TYR TRP PRO SER ILE SER ARG LYS SEQRES 27 B 362 THR GLN LEU VAL VAL ASP ALA VAL LYS GLU SER VAL ASP SEQRES 28 B 362 LYS ASN TYR GLN GLN ILE SER LEU SER GLY ARG
MODRES 1YDW MSE A 12 MET SELENOMETHIONINE MODRES 1YDW MSE A 106 MET SELENOMETHIONINE MODRES 1YDW MSE A 126 MET SELENOMETHIONINE MODRES 1YDW MSE A 130 MET SELENOMETHIONINE MODRES 1YDW MSE A 249 MET SELENOMETHIONINE MODRES 1YDW MSE A 310 MET SELENOMETHIONINE MODRES 1YDW MSE B 12 MET SELENOMETHIONINE MODRES 1YDW MSE B 106 MET SELENOMETHIONINE MODRES 1YDW MSE B 126 MET SELENOMETHIONINE MODRES 1YDW MSE B 130 MET SELENOMETHIONINE MODRES 1YDW MSE B 249 MET SELENOMETHIONINE MODRES 1YDW MSE B 310 MET SELENOMETHIONINE
HET MSE A 12 8 HET MSE A 106 8 HET MSE A 126 8 HET MSE A 130 8 HET MSE A 249 8 HET MSE A 310 8 HET MSE B 12 8 HET MSE B 106 8 HET MSE B 126 8 HET MSE B 130 8 HET MSE B 249 8 HET MSE B 310 8
HETNAM MSE SELENOMETHIONINE
FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 HOH *123(H2 O)
HELIX 1 1 ILE A 17 ALA A 28 1 12 HELIX 2 2 SER A 40 ASN A 51 1 12 HELIX 3 3 SER A 62 ASP A 69 1 8 HELIX 4 4 PRO A 80 SER A 82 5 3 HELIX 5 5 LEU A 83 GLU A 93 1 11 HELIX 6 6 ASN A 107 ALA A 120 1 14 HELIX 7 7 MSE A 130 ALA A 138 5 9 HELIX 8 8 GLU A 142 ASP A 146 5 5 HELIX 9 9 ASP A 165 ASP A 172 1 8 HELIX 10 10 ILE A 173 LYS A 176 5 4 HELIX 11 11 LEU A 182 ALA A 188 1 7 HELIX 12 12 ALA A 188 ASN A 200 1 13 HELIX 13 13 PRO A 305 ALA A 315 1 11 HELIX 14 14 TYR A 331 LYS A 352 1 22 HELIX 15 15 ILE B 17 ALA B 28 1 12 HELIX 16 16 SER B 40 ASN B 51 1 12 HELIX 17 17 SER B 62 GLU B 68 1 7 HELIX 18 18 PRO B 80 SER B 82 5 3 HELIX 19 19 LEU B 83 GLU B 93 1 11 HELIX 20 20 ASN B 107 ASN B 121 1 15 HELIX 21 21 MSE B 130 HIS B 133 5 4 HELIX 22 22 ASN B 134 ASP B 146 1 13 HELIX 23 23 ASP B 165 ASP B 172 1 8 HELIX 24 24 ILE B 173 LYS B 176 5 4 HELIX 25 25 GLY B 183 ALA B 188 1 6 HELIX 26 26 ALA B 188 ASN B 200 1 13 HELIX 27 27 PRO B 305 ALA B 315 1 11 HELIX 28 28 GLY B 330 LYS B 352 1 23
SHEET 1 A 6 LYS A 58 HIS A 60 0 SHEET 2 A 6 ALA A 31 ALA A 37 1 N SER A 34 O LYS A 58 SHEET 3 A 6 ILE A 7 MSE A 12 1 N ILE A 7 O THR A 32 SHEET 4 A 6 ALA A 74 VAL A 77 1 O ALA A 74 N GLY A 10 SHEET 5 A 6 HIS A 97 LEU A 100 1 O LEU A 99 N LEU A 75 SHEET 6 A 6 ILE A 125 ASP A 127 1 O MSE A 126 N ILE A 98 SHEET 1 B 8 VAL A 215 LEU A 216 0 SHEET 2 B 8 ILE A 222 SER A 230 -1 O LEU A 223 N VAL A 215 SHEET 3 B 8 THR A 236 SER A 242 -1 O CYS A 241 N CYS A 225 SHEET 4 B 8 LEU A 153 ALA A 163 1 N PHE A 160 O TYR A 240 SHEET 5 B 8 LEU A 244 GLY A 255 -1 O THR A 252 N GLN A 157 SHEET 6 B 8 GLY A 258 VAL A 262 -1 O GLY A 258 N GLY A 255 SHEET 7 B 8 GLU A 273 THR A 280 -1 O SER A 279 N THR A 259 SHEET 8 B 8 SER A 296 LYS A 301 -1 O SER A 296 N THR A 278 SHEET 1 C 4 VAL A 215 LEU A 216 0 SHEET 2 C 4 ILE A 222 SER A 230 -1 O LEU A 223 N VAL A 215 SHEET 3 C 4 THR A 207 ALA A 210 -1 N THR A 209 O SER A 228 SHEET 4 C 4 ILE A 357 SER A 358 -1 O ILE A 357 N VAL A 208 SHEET 1 D 6 LYS B 58 HIS B 60 0 SHEET 2 D 6 ALA B 31 ALA B 37 1 N VAL B 36 O HIS B 60 SHEET 3 D 6 ILE B 7 MSE B 12 1 N ILE B 9 O SER B 34 SHEET 4 D 6 ALA B 74 VAL B 77 1 O TYR B 76 N GLY B 10 SHEET 5 D 6 HIS B 97 LEU B 100 1 O LEU B 99 N LEU B 75 SHEET 6 D 6 ILE B 125 ASP B 127 1 O MSE B 126 N LEU B 100 SHEET 1 E 8 VAL B 215 LEU B 216 0 SHEET 2 E 8 ILE B 222 SER B 230 -1 O LEU B 223 N VAL B 215 SHEET 3 E 8 THR B 236 SER B 242 -1 O CYS B 241 N CYS B 225 SHEET 4 E 8 LEU B 153 ALA B 163 1 N SER B 158 O THR B 238 SHEET 5 E 8 LEU B 244 GLY B 255 -1 O THR B 252 N GLN B 157 SHEET 6 E 8 GLY B 258 VAL B 262 -1 O GLY B 258 N GLY B 255 SHEET 7 E 8 GLU B 273 THR B 280 -1 O THR B 277 N ARG B 261 SHEET 8 E 8 SER B 296 LYS B 301 -1 O SER B 296 N THR B 278 SHEET 1 F 4 VAL B 215 LEU B 216 0 SHEET 2 F 4 ILE B 222 SER B 230 -1 O LEU B 223 N VAL B 215 SHEET 3 F 4 THR B 207 ALA B 210 -1 N THR B 207 O SER B 230 SHEET 4 F 4 ILE B 357 SER B 358 -1 O ILE B 357 N VAL B 208
LINK C VAL A 11 N MSE A 12 1555 1555 1.31 LINK C MSE A 12 N GLY A 13 1555 1555 1.32 LINK C ALA A 105 N MSE A 106 1555 1555 1.32 LINK C MSE A 106 N ASN A 107 1555 1555 1.32 LINK C ILE A 125 N MSE A 126 1555 1555 1.33 LINK C MSE A 126 N ASP A 127 1555 1555 1.34 LINK C THR A 129 N MSE A 130 1555 1555 1.32 LINK C MSE A 130 N TRP A 131 1555 1555 1.34 LINK C THR A 248 N MSE A 249 1555 1555 1.33 LINK C MSE A 249 N GLU A 250 1555 1555 1.33 LINK C CYS A 309 N MSE A 310 1555 1555 1.33 LINK C MSE A 310 N VAL A 311 1555 1555 1.34 LINK C VAL B 11 N MSE B 12 1555 1555 1.33 LINK C MSE B 12 N GLY B 13 1555 1555 1.32 LINK C ALA B 105 N MSE B 106 1555 1555 1.33 LINK C MSE B 106 N ASN B 107 1555 1555 1.34 LINK C ILE B 125 N MSE B 126 1555 1555 1.33 LINK C MSE B 126 N ASP B 127 1555 1555 1.34 LINK C THR B 129 N MSE B 130 1555 1555 1.33 LINK C MSE B 130 N TRP B 131 1555 1555 1.34 LINK C THR B 248 N MSE B 249 1555 1555 1.33 LINK C MSE B 249 N GLU B 250 1555 1555 1.32 LINK C CYS B 309 N MSE B 310 1555 1555 1.32 LINK C MSE B 310 N VAL B 311 1555 1555 1.34
CISPEP 1 LYS A 102 PRO A 103 0 -6.62 CISPEP 2 ALA B 28 PRO B 29 0 -0.03 CISPEP 3 LYS B 102 PRO B 103 0 -15.15
CRYST1 58.197 107.663 129.748 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.017200 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009300 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007700 0.00000