10 20 30 40 50 60 70 80 1YCY - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric Unit
HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 23-DEC-04 1YCY
TITLE CONSERVED HYPOTHETICAL PROTEIN PFU-1806301-001 FROM TITLE 2 PYROCOCCUS FURIOSUS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERVED HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS STRUCTURAL GENOMICS, SOUTHEAST COLLABORATORY FOR STRUCTURAL KEYWDS 2 GENOMICS, SECSG, PROTEIN STRUCTURE INITIATIVE, PSI, KEYWDS 3 CONSERVED HYPOTHETICAL PROTEIN, PYROCOCCUS FURIOSUS, KEYWDS 4 HYPERTHERMOPHILE, UNKNOWN FUNCTION
EXPDTA X-RAY DIFFRACTION
AUTHOR L.HUANG,Z.-J.LIU,D.LEE,W.TEMPEL,J.CHANG,M.ZHAO,J.HABEL,H.XU, AUTHOR 2 L.CHEN,D.NGUYEN,S.-H.CHANG,P.HORANYI,Q.FLORENCE,W.ZHOU, AUTHOR 3 D.LIN,H.ZHANG,J.PRAISSMAN,F.E.JENNEY JR.,M.W.W.ADAMS, AUTHOR 4 J.P.ROSE,B.-C.WANG,SOUTHEAST COLLABORATORY FOR STRUCTURAL AUTHOR 5 GENOMICS (SECSG)
REVDAT 5 24-FEB-09 1YCY 1 VERSN REVDAT 4 27-MAY-08 1YCY 1 REMARK REVDAT 3 14-NOV-06 1YCY 1 REMARK REVDAT 2 15-MAR-05 1YCY 1 REMARK MASTER REVDAT 1 22-FEB-05 1YCY 0
JRNL AUTH L.HUANG,Z.-J.LIU,D.LEE,W.TEMPEL,J.CHANG,M.ZHAO, JRNL AUTH 2 J.HABEL,H.XU,L.CHEN,D.NGUYEN,S.-H.CHANG,P.HORANYI, JRNL AUTH 3 Q.FLORENCE,W.ZHOU,D.LIN,H.ZHANG,J.PRAISSMAN, JRNL AUTH 4 F.E.JENNEY JR.,M.W.W.ADAMS,J.P.ROSE,B.-C.WANG JRNL TITL CONSERVED HYPOTHETICAL PROTEIN PFU-1806301-001 JRNL TITL 2 FROM PYROCOCCUS FURIOSUS JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5, MOLPROBITY REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 10016 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.281 REMARK 3 FREE R VALUE : 0.311 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.172 REMARK 3 FREE R VALUE TEST SET COUNT : 518 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 621 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3810 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.4690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : NULL REMARK 3 NUCLEIC ACID ATOMS : NULL REMARK 3 HETEROGEN ATOMS : NULL REMARK 3 SOLVENT ATOMS : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.24600 REMARK 3 B22 (A**2) : 3.24600 REMARK 3 B33 (A**2) : -4.86900 REMARK 3 B12 (A**2) : 1.62300 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.385 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.895 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.883 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1817 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1771 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2460 ; 1.343 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4010 ; 0.738 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 240 ; 6.453 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 56 ;42.344 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 298 ;16.832 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;22.463 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 311 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1988 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 344 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 380 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1740 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 862 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1221 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 41 ; 0.103 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.236 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 76 ; 0.196 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.055 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1264 ; 2.651 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 528 ; 0.636 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1896 ; 3.401 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 681 ; 1.949 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 564 ; 2.848 ; 3.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 5 A 70 4 REMARK 3 1 B 5 B 70 4 REMARK 3 1 C 5 C 70 4 REMARK 3 1 D 5 D 70 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 868 ; 0.24 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 868 ; 0.23 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 868 ; 0.26 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 D (A): 868 ; 0.26 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 868 ; 0.41 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 868 ; 0.37 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 868 ; 0.42 ; 2.00 REMARK 3 MEDIUM THERMAL 1 D (A**2): 868 ; 0.44 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 1YCY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-05. REMARK 100 THE RCSB ID CODE IS RCSB031388.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11111 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.670 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.29400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAS REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V PEG 3000, 0.1M SODIUM REMARK 280 ACETATE, 0.01M NAD, PH 4.5, MODIFIED MICROBATCH, TEMPERATURE REMARK 280 291K, PH 4.50
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 126.52133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.26067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 126.52133 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.26067 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 126.52133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 63.26067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 126.52133 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 63.26067 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXADECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXADECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -219.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 124.43700 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 71.84374 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 253.04267 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 124.43700 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 71.84374 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 253.04267 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 124.43700 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 71.84374 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 253.04267
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 GLY A 2 REMARK 465 MSE A 3 REMARK 465 GLU A 4 REMARK 465 GLY A 25 REMARK 465 ASP A 26 REMARK 465 HIS A 27 REMARK 465 SER A 28 REMARK 465 GLU A 71 REMARK 465 MSE B 1 REMARK 465 GLY B 2 REMARK 465 MSE B 3 REMARK 465 GLU B 4 REMARK 465 GLY B 25 REMARK 465 ASP B 26 REMARK 465 HIS B 27 REMARK 465 SER B 28 REMARK 465 GLU B 71 REMARK 465 MSE C 1 REMARK 465 GLY C 2 REMARK 465 MSE C 3 REMARK 465 GLU C 4 REMARK 465 GLY C 25 REMARK 465 ASP C 26 REMARK 465 HIS C 27 REMARK 465 SER C 28 REMARK 465 GLU C 71 REMARK 465 MSE D 1 REMARK 465 GLY D 2 REMARK 465 MSE D 3 REMARK 465 GLU D 4 REMARK 465 GLY D 25 REMARK 465 ASP D 26 REMARK 465 HIS D 27 REMARK 465 SER D 28 REMARK 465 GLU D 71
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 5 OG REMARK 470 LEU A 6 CD1 CD2 REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 LYS A 9 CD CE NZ REMARK 470 LYS A 12 CD CE NZ REMARK 470 VAL A 23 CG1 CG2 REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 GLU A 39 CG CD OE1 OE2 REMARK 470 LYS A 44 CE NZ REMARK 470 VAL A 47 CG1 CG2 REMARK 470 VAL A 49 CG1 CG2 REMARK 470 LYS A 55 CD CE NZ REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 470 ASP A 63 CG OD1 OD2 REMARK 470 SER B 5 OG REMARK 470 LEU B 6 CD1 CD2 REMARK 470 GLU B 8 CG CD OE1 OE2 REMARK 470 LYS B 9 CD CE NZ REMARK 470 LYS B 12 CD CE NZ REMARK 470 VAL B 23 CG1 CG2 REMARK 470 GLU B 38 CG CD OE1 OE2 REMARK 470 GLU B 39 CG CD OE1 OE2 REMARK 470 LYS B 44 CE NZ REMARK 470 VAL B 47 CG1 CG2 REMARK 470 ASP B 48 CG OD1 OD2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 GLU B 62 CG CD OE1 OE2 REMARK 470 ASP B 63 CG OD1 OD2 REMARK 470 SER C 5 OG REMARK 470 LEU C 6 CD1 CD2 REMARK 470 GLU C 8 CG CD OE1 OE2 REMARK 470 LYS C 9 CD CE NZ REMARK 470 LYS C 12 CD CE NZ REMARK 470 VAL C 23 CG1 CG2 REMARK 470 GLU C 34 CG CD OE1 OE2 REMARK 470 GLU C 38 CG CD OE1 OE2 REMARK 470 GLU C 39 CG CD OE1 OE2 REMARK 470 LYS C 44 CE NZ REMARK 470 LYS C 55 CD CE NZ REMARK 470 GLU C 62 CG CD OE1 OE2 REMARK 470 ASP C 63 CG OD1 OD2 REMARK 470 SER D 5 OG REMARK 470 LEU D 6 CD1 CD2 REMARK 470 GLU D 8 CG CD OE1 OE2 REMARK 470 LYS D 9 CD CE NZ REMARK 470 LYS D 12 CD CE NZ REMARK 470 VAL D 23 CG1 CG2 REMARK 470 GLU D 38 CG CD OE1 OE2 REMARK 470 GLU D 39 CG CD OE1 OE2 REMARK 470 LYS D 44 CG CD CE NZ REMARK 470 VAL D 47 CG1 CG2 REMARK 470 ASP D 48 CG OD1 OD2 REMARK 470 VAL D 49 CG1 CG2 REMARK 470 ASN D 52 CG OD1 ND2 REMARK 470 LYS D 55 CD CE NZ REMARK 470 GLU D 62 CG CD OE1 OE2 REMARK 470 ASP D 63 CG OD1 OD2 REMARK 470 ILE D 64 CD1
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 6 -36.56 -38.51 REMARK 500 LEU A 33 87.12 -67.52 REMARK 500 ASP A 45 76.74 53.85 REMARK 500 ARG A 53 -32.67 -134.52 REMARK 500 LEU B 33 99.73 -69.40 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PFU-1806301-001 RELATED DB: TARGETDB
DBREF 1YCY A 1 71 UNP Q8TZN2 Q8TZN2_PYRFU 1 71 DBREF 1YCY B 1 71 UNP Q8TZN2 Q8TZN2_PYRFU 1 71 DBREF 1YCY C 1 71 UNP Q8TZN2 Q8TZN2_PYRFU 1 71 DBREF 1YCY D 1 71 UNP Q8TZN2 Q8TZN2_PYRFU 1 71
SEQADV 1YCY MSE A 1 UNP Q8TZN2 MET 1 MODIFIED RESIDUE SEQADV 1YCY MSE A 3 UNP Q8TZN2 MET 3 MODIFIED RESIDUE SEQADV 1YCY MSE A 57 UNP Q8TZN2 MET 57 MODIFIED RESIDUE SEQADV 1YCY MSE A 68 UNP Q8TZN2 MET 68 MODIFIED RESIDUE SEQADV 1YCY MSE B 1 UNP Q8TZN2 MET 1 MODIFIED RESIDUE SEQADV 1YCY MSE B 3 UNP Q8TZN2 MET 3 MODIFIED RESIDUE SEQADV 1YCY MSE B 57 UNP Q8TZN2 MET 57 MODIFIED RESIDUE SEQADV 1YCY MSE B 68 UNP Q8TZN2 MET 68 MODIFIED RESIDUE SEQADV 1YCY MSE C 1 UNP Q8TZN2 MET 1 MODIFIED RESIDUE SEQADV 1YCY MSE C 3 UNP Q8TZN2 MET 3 MODIFIED RESIDUE SEQADV 1YCY MSE C 57 UNP Q8TZN2 MET 57 MODIFIED RESIDUE SEQADV 1YCY MSE C 68 UNP Q8TZN2 MET 68 MODIFIED RESIDUE SEQADV 1YCY MSE D 1 UNP Q8TZN2 MET 1 MODIFIED RESIDUE SEQADV 1YCY MSE D 3 UNP Q8TZN2 MET 3 MODIFIED RESIDUE SEQADV 1YCY MSE D 57 UNP Q8TZN2 MET 57 MODIFIED RESIDUE SEQADV 1YCY MSE D 68 UNP Q8TZN2 MET 68 MODIFIED RESIDUE
SEQRES 1 A 71 MSE GLY MSE GLU SER LEU LEU GLU LYS VAL LEU LYS GLU SEQRES 2 A 71 TRP LYS GLY HIS LYS VAL ALA VAL SER VAL GLY GLY ASP SEQRES 3 A 71 HIS SER PHE THR GLY THR LEU GLU ASP PHE ASP GLU GLU SEQRES 4 A 71 VAL ILE LEU LEU LYS ASP VAL VAL ASP VAL ILE GLY ASN SEQRES 5 A 71 ARG GLY LYS GLN MSE LEU ILE GLY LEU GLU ASP ILE ASN SEQRES 6 A 71 TRP ILE MSE LEU LEU GLU SEQRES 1 B 71 MSE GLY MSE GLU SER LEU LEU GLU LYS VAL LEU LYS GLU SEQRES 2 B 71 TRP LYS GLY HIS LYS VAL ALA VAL SER VAL GLY GLY ASP SEQRES 3 B 71 HIS SER PHE THR GLY THR LEU GLU ASP PHE ASP GLU GLU SEQRES 4 B 71 VAL ILE LEU LEU LYS ASP VAL VAL ASP VAL ILE GLY ASN SEQRES 5 B 71 ARG GLY LYS GLN MSE LEU ILE GLY LEU GLU ASP ILE ASN SEQRES 6 B 71 TRP ILE MSE LEU LEU GLU SEQRES 1 C 71 MSE GLY MSE GLU SER LEU LEU GLU LYS VAL LEU LYS GLU SEQRES 2 C 71 TRP LYS GLY HIS LYS VAL ALA VAL SER VAL GLY GLY ASP SEQRES 3 C 71 HIS SER PHE THR GLY THR LEU GLU ASP PHE ASP GLU GLU SEQRES 4 C 71 VAL ILE LEU LEU LYS ASP VAL VAL ASP VAL ILE GLY ASN SEQRES 5 C 71 ARG GLY LYS GLN MSE LEU ILE GLY LEU GLU ASP ILE ASN SEQRES 6 C 71 TRP ILE MSE LEU LEU GLU SEQRES 1 D 71 MSE GLY MSE GLU SER LEU LEU GLU LYS VAL LEU LYS GLU SEQRES 2 D 71 TRP LYS GLY HIS LYS VAL ALA VAL SER VAL GLY GLY ASP SEQRES 3 D 71 HIS SER PHE THR GLY THR LEU GLU ASP PHE ASP GLU GLU SEQRES 4 D 71 VAL ILE LEU LEU LYS ASP VAL VAL ASP VAL ILE GLY ASN SEQRES 5 D 71 ARG GLY LYS GLN MSE LEU ILE GLY LEU GLU ASP ILE ASN SEQRES 6 D 71 TRP ILE MSE LEU LEU GLU
MODRES 1YCY MSE A 57 MET SELENOMETHIONINE MODRES 1YCY MSE A 68 MET SELENOMETHIONINE MODRES 1YCY MSE B 57 MET SELENOMETHIONINE MODRES 1YCY MSE B 68 MET SELENOMETHIONINE MODRES 1YCY MSE C 57 MET SELENOMETHIONINE MODRES 1YCY MSE C 68 MET SELENOMETHIONINE MODRES 1YCY MSE D 57 MET SELENOMETHIONINE MODRES 1YCY MSE D 68 MET SELENOMETHIONINE
HET MSE A 57 8 HET MSE A 68 8 HET MSE B 57 8 HET MSE B 68 8 HET MSE C 57 8 HET MSE C 68 8 HET MSE D 57 8 HET MSE D 68 8
HETNAM MSE SELENOMETHIONINE
FORMUL 1 MSE 8(C5 H11 N O2 SE)
HELIX 1 1 SER A 5 LYS A 15 1 11 HELIX 2 2 SER B 5 LYS B 15 1 11 HELIX 3 3 SER C 5 LYS C 15 1 11 HELIX 4 4 SER D 5 LYS D 15 1 11
SHEET 1 A20 ILE B 64 LEU B 69 0 SHEET 2 A20 LYS B 18 VAL B 23 -1 N SER B 22 O ASN B 65 SHEET 3 A20 THR B 30 PHE B 36 -1 O GLY B 31 N VAL B 19 SHEET 4 A20 VAL B 40 VAL B 47 -1 O LEU B 42 N ASP B 35 SHEET 5 A20 ASN B 52 GLY B 60 -1 O MSE B 57 N LEU B 43 SHEET 6 A20 ILE A 64 LEU A 69 -1 N ILE A 67 O LEU B 58 SHEET 7 A20 LYS A 18 VAL A 23 -1 N ALA A 20 O MSE A 68 SHEET 8 A20 THR A 30 PHE A 36 -1 O GLY A 31 N VAL A 19 SHEET 9 A20 VAL A 40 ASP A 48 -1 O LEU A 42 N ASP A 35 SHEET 10 A20 GLY A 51 GLY A 60 -1 O GLY A 51 N ASP A 48 SHEET 11 A20 ILE C 64 LEU C 69 -1 O ILE C 67 N LEU A 58 SHEET 12 A20 LYS C 18 VAL C 23 -1 N ALA C 20 O MSE C 68 SHEET 13 A20 THR C 30 PHE C 36 -1 O GLY C 31 N VAL C 19 SHEET 14 A20 VAL C 40 VAL C 47 -1 O LEU C 42 N ASP C 35 SHEET 15 A20 ASN C 52 GLY C 60 -1 O ILE C 59 N ILE C 41 SHEET 16 A20 ILE D 64 LEU D 69 -1 O ILE D 67 N LEU C 58 SHEET 17 A20 LYS D 18 VAL D 23 -1 N ALA D 20 O MSE D 68 SHEET 18 A20 THR D 30 PHE D 36 -1 O GLY D 31 N VAL D 19 SHEET 19 A20 VAL D 40 VAL D 47 -1 O LEU D 42 N ASP D 35 SHEET 20 A20 ASN D 52 GLY D 60 -1 O ARG D 53 N VAL D 46
LINK C GLN A 56 N MSE A 57 1555 1555 1.33 LINK C MSE A 57 N LEU A 58 1555 1555 1.32 LINK C ILE A 67 N MSE A 68 1555 1555 1.32 LINK C MSE A 68 N LEU A 69 1555 1555 1.33 LINK C GLN B 56 N MSE B 57 1555 1555 1.33 LINK C MSE B 57 N LEU B 58 1555 1555 1.32 LINK C ILE B 67 N MSE B 68 1555 1555 1.31 LINK C MSE B 68 N LEU B 69 1555 1555 1.33 LINK C GLN C 56 N MSE C 57 1555 1555 1.33 LINK C MSE C 57 N LEU C 58 1555 1555 1.32 LINK C ILE C 67 N MSE C 68 1555 1555 1.31 LINK C MSE C 68 N LEU C 69 1555 1555 1.33 LINK C GLN D 56 N MSE D 57 1555 1555 1.33 LINK C MSE D 57 N LEU D 58 1555 1555 1.32 LINK C ILE D 67 N MSE D 68 1555 1555 1.31 LINK C MSE D 68 N LEU D 69 1555 1555 1.32
CRYST1 82.958 82.958 189.782 90.00 90.00 120.00 P 62 2 2 48
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012100 0.007000 0.000000 0.00000
SCALE2 0.000000 0.013900 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005300 0.00000