10 20 30 40 50 60 70 80 1YCM - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 22-DEC-04 1YCM
TITLE SOLUTION STRUCTURE OF MATRIX METALLOPROTEINASE 12 (MMP12) TITLE 2 IN THE PRESENCE OF N-ISOBUTYL-N-[4- TITLE 3 METHOXYPHENYLSULFONYL]GLYCYL HYDROXAMIC ACID (NNGH)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE METALLOELASTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HME, MATRIX METALLOPROTEINASE-12, MMP-12, COMPND 5 MACROPHAGE ELASTASE, ME; COMPND 6 EC: 3.4.24.65; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MMP12, HME; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS MACROPHAGE METALLOELASTASE, MMP-12, SOLUTION STRUCTURE, KEYWDS 2 NNGH, ZINC, CALCIUM, STRUCTURAL PROTEOMICS IN EUROPE, SPINE, KEYWDS 3 STRUCTURAL GENOMICS, HYDROLASE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR I.BERTINI,V.CALDERONE,M.COSENZA,M.FRAGAI,Y.M.LEE,C.LUCHINAT, AUTHOR 2 S.MANGANI,B.TERNI,P.TURANO,STRUCTURAL PROTEOMICS IN EUROPE AUTHOR 3 (SPINE)
REVDAT 2 24-FEB-09 1YCM 1 VERSN REVDAT 1 19-APR-05 1YCM 0
JRNL AUTH I.BERTINI,V.CALDERONE,M.COSENZA,M.FRAGAI,Y.M.LEE, JRNL AUTH 2 C.LUCHINAT,S.MANGANI,B.TERNI,P.TURANO JRNL TITL CONFORMATIONAL VARIABILITY OF MATRIX JRNL TITL 2 METALLOPROTEINASES: BEYOND A SINGLE 3D STRUCTURE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 5334 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 15809432 JRNL DOI 10.1073/PNAS.0407106102
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 6.0 REMARK 3 AUTHORS : KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1YCM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-05. REMARK 100 THE RCSB ID CODE IS RCSB031380.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 0.3 M NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.9 MM MMP12 U-15N,13C; 10 MM REMARK 210 DEUTERATED TRIS, 5 MM CACL2, REMARK 210 0.1 MM ZNCL2, 0.3 M NACL; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY, 2D NOESY, REMARK 210 HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ, 800 MHZ, 700 MHZ, REMARK 210 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE, DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.1, XEASY 1.3, DYANA REMARK 210 1.5 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, TORSION ANGLE REMARK 210 DYNAMICS, RESIDUE DIPOLAR REMARK 210 COUPLINGS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 20 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING DISTANCE, DIHEDRAL REMARK 210 ANGLE AND H-BOND RESTRAINTS WITH RESIDUE DIPOLAR COUPLING REMARK 210 RESTRAINTS
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 3 HIS A 218 CG HIS A 218 CD2 0.070 REMARK 500 5 HIS A 218 CG HIS A 218 CD2 0.063 REMARK 500 15 HIS A 218 CG HIS A 218 CD2 0.067 REMARK 500 16 HIS A 218 CB HIS A 218 CG 0.109 REMARK 500 16 HIS A 218 CG HIS A 218 CD2 0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 HIS A 196 CA - CB - CG ANGL. DEV. = 12.8 DEGREES REMARK 500 1 THR A 239 N - CA - CB ANGL. DEV. = -11.7 DEGREES REMARK 500 3 LEU A 160 CB - CA - C ANGL. DEV. = 11.6 DEGREES REMARK 500 3 ILE A 180 CB - CA - C ANGL. DEV. = 15.8 DEGREES REMARK 500 3 ILE A 180 N - CA - CB ANGL. DEV. = -17.5 DEGREES REMARK 500 3 ILE A 180 CA - CB - CG2 ANGL. DEV. = 19.5 DEGREES REMARK 500 3 HIS A 196 CB - CG - CD2 ANGL. DEV. = -11.2 DEGREES REMARK 500 3 HIS A 218 CB - CA - C ANGL. DEV. = -15.5 DEGREES REMARK 500 3 HIS A 218 N - CA - CB ANGL. DEV. = 13.6 DEGREES REMARK 500 3 HIS A 218 CB - CG - CD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 3 THR A 239 N - CA - CB ANGL. DEV. = -12.2 DEGREES REMARK 500 4 HIS A 196 N - CA - CB ANGL. DEV. = 11.9 DEGREES REMARK 500 4 HIS A 196 CA - CB - CG ANGL. DEV. = 13.7 DEGREES REMARK 500 4 HIS A 222 CA - CB - CG ANGL. DEV. = 11.1 DEGREES REMARK 500 5 ASP A 124 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 5 VAL A 162 CA - CB - CG1 ANGL. DEV. = 9.9 DEGREES REMARK 500 5 HIS A 218 N - CA - CB ANGL. DEV. = 17.6 DEGREES REMARK 500 6 THR A 239 N - CA - CB ANGL. DEV. = -11.6 DEGREES REMARK 500 7 HIS A 196 CA - CB - CG ANGL. DEV. = 12.2 DEGREES REMARK 500 9 HIS A 196 CB - CG - CD2 ANGL. DEV. = -10.9 DEGREES REMARK 500 10 THR A 239 N - CA - CB ANGL. DEV. = -11.8 DEGREES REMARK 500 10 GLY A 263 CA - C - O ANGL. DEV. = -40.2 DEGREES REMARK 500 11 LEU A 181 CB - CA - C ANGL. DEV. = 12.1 DEGREES REMARK 500 12 ASP A 170 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 14 THR A 215 N - CA - CB ANGL. DEV. = -12.5 DEGREES REMARK 500 15 ARG A 127 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 15 HIS A 168 CB - CG - CD2 ANGL. DEV. = -10.0 DEGREES REMARK 500 15 LEU A 181 CB - CA - C ANGL. DEV. = 18.9 DEGREES REMARK 500 15 HIS A 218 CB - CA - C ANGL. DEV. = -15.1 DEGREES REMARK 500 15 HIS A 218 N - CA - CB ANGL. DEV. = 14.8 DEGREES REMARK 500 15 HIS A 218 CB - CG - CD2 ANGL. DEV. = 8.6 DEGREES REMARK 500 15 THR A 239 N - CA - CB ANGL. DEV. = -11.8 DEGREES REMARK 500 16 HIS A 218 N - CA - CB ANGL. DEV. = 17.5 DEGREES REMARK 500 17 THR A 239 N - CA - CB ANGL. DEV. = -12.2 DEGREES REMARK 500 18 THR A 239 N - CA - CB ANGL. DEV. = -11.9 DEGREES REMARK 500 19 THR A 239 N - CA - CB ANGL. DEV. = -12.3 DEGREES REMARK 500 20 THR A 239 N - CA - CB ANGL. DEV. = -11.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 110 73.86 -174.27 REMARK 500 1 LYS A 111 -79.05 58.55 REMARK 500 1 HIS A 112 -72.33 56.34 REMARK 500 1 HIS A 168 137.68 82.01 REMARK 500 1 HIS A 172 69.90 -107.59 REMARK 500 1 ALA A 173 -75.77 -56.59 REMARK 500 1 PRO A 187 89.38 -69.92 REMARK 500 1 PHE A 237 157.34 -48.10 REMARK 500 1 PHE A 248 73.33 45.61 REMARK 500 2 LYS A 111 -57.59 -168.29 REMARK 500 2 HIS A 112 -63.17 63.16 REMARK 500 2 HIS A 172 -72.41 -109.46 REMARK 500 2 ALA A 173 -68.23 63.44 REMARK 500 2 ASP A 175 25.36 -168.98 REMARK 500 2 HIS A 228 95.69 56.14 REMARK 500 2 PHE A 248 71.91 53.05 REMARK 500 2 TYR A 262 -166.59 59.11 REMARK 500 3 ARG A 110 70.62 -69.56 REMARK 500 3 LYS A 111 -179.88 65.24 REMARK 500 3 HIS A 168 54.59 -155.32 REMARK 500 3 HIS A 172 71.94 -111.50 REMARK 500 3 ALA A 173 -72.53 -88.80 REMARK 500 3 ASP A 175 28.12 -178.56 REMARK 500 3 ASP A 198 89.73 -67.24 REMARK 500 3 SER A 230 39.54 -148.79 REMARK 500 3 PHE A 248 116.71 -34.56 REMARK 500 3 LEU A 261 74.13 -60.53 REMARK 500 4 ARG A 110 -56.53 63.64 REMARK 500 4 LYS A 111 -51.13 -151.09 REMARK 500 4 HIS A 112 -78.34 57.90 REMARK 500 4 HIS A 172 -72.85 -123.41 REMARK 500 4 ALA A 173 -77.48 56.21 REMARK 500 4 ASP A 175 10.16 -171.80 REMARK 500 4 ASP A 198 92.51 -62.24 REMARK 500 4 HIS A 206 -154.85 -74.77 REMARK 500 4 PHE A 248 75.50 60.96 REMARK 500 5 LYS A 111 -59.92 -159.41 REMARK 500 5 HIS A 112 -54.33 67.02 REMARK 500 5 MET A 156 72.89 -116.37 REMARK 500 5 HIS A 168 -31.75 -153.73 REMARK 500 5 ALA A 173 -140.22 49.74 REMARK 500 5 ASP A 175 11.55 -158.14 REMARK 500 5 PRO A 187 86.83 -68.57 REMARK 500 5 ASP A 198 96.76 -66.52 REMARK 500 5 HIS A 228 120.08 71.38 REMARK 500 5 SER A 230 29.91 -142.14 REMARK 500 5 PHE A 237 155.49 -48.90 REMARK 500 5 ILE A 245 -23.76 71.78 REMARK 500 5 PHE A 248 82.90 39.43 REMARK 500 6 LYS A 111 -40.21 -163.06 REMARK 500 6 HIS A 112 -69.61 64.60 REMARK 500 6 HIS A 168 74.90 -151.20 REMARK 500 6 HIS A 172 -71.81 -112.90 REMARK 500 6 ALA A 173 -77.66 56.35 REMARK 500 6 ASP A 175 15.65 -169.08 REMARK 500 6 ASP A 198 83.34 -63.36 REMARK 500 6 PHE A 237 165.02 -49.83 REMARK 500 6 PHE A 248 72.65 52.47 REMARK 500 6 TYR A 262 -34.41 -156.06 REMARK 500 7 ARG A 110 78.00 -151.80 REMARK 500 7 LYS A 111 70.27 52.62 REMARK 500 7 HIS A 168 64.48 -66.11 REMARK 500 7 ALA A 173 -38.50 -163.69 REMARK 500 7 HIS A 228 102.92 57.39 REMARK 500 7 SER A 230 44.33 -140.72 REMARK 500 7 TYR A 242 109.59 -49.04 REMARK 500 7 ASP A 244 78.50 -60.00 REMARK 500 7 PHE A 248 72.90 38.80 REMARK 500 7 LEU A 261 87.47 -52.58 REMARK 500 8 LYS A 111 -87.13 -100.98 REMARK 500 8 HIS A 112 -61.14 67.38 REMARK 500 8 HIS A 168 82.94 -158.66 REMARK 500 8 HIS A 172 -71.52 -68.96 REMARK 500 8 ALA A 173 -111.80 53.66 REMARK 500 8 ASP A 175 30.48 -166.02 REMARK 500 8 HIS A 228 175.28 60.73 REMARK 500 8 SER A 230 31.74 -143.33 REMARK 500 8 PHE A 237 154.77 -49.65 REMARK 500 8 PHE A 248 113.72 -26.13 REMARK 500 9 LYS A 111 -63.61 -126.76 REMARK 500 9 HIS A 112 -63.07 61.56 REMARK 500 9 HIS A 168 -45.69 -154.23 REMARK 500 9 ALA A 173 -109.90 20.06 REMARK 500 9 ASP A 175 24.46 -164.32 REMARK 500 9 PRO A 187 99.38 -66.64 REMARK 500 9 HIS A 196 85.16 -155.07 REMARK 500 9 ASP A 198 81.03 -69.87 REMARK 500 9 HIS A 228 93.22 -0.88 REMARK 500 9 PHE A 237 173.15 -49.48 REMARK 500 9 PHE A 248 76.24 58.50 REMARK 500 9 LEU A 261 91.65 -44.03 REMARK 500 9 TYR A 262 54.94 -105.50 REMARK 500 10 LYS A 111 -72.91 -169.14 REMARK 500 10 HIS A 112 -71.39 65.52 REMARK 500 10 ASP A 124 -51.57 -29.85 REMARK 500 10 THR A 154 78.08 -154.07 REMARK 500 10 HIS A 172 -149.21 -96.34 REMARK 500 10 LYS A 177 106.91 -56.15 REMARK 500 10 HIS A 228 98.87 64.53 REMARK 500 10 PHE A 237 177.10 -48.22 REMARK 500 10 PHE A 248 87.65 53.35 REMARK 500 11 TRP A 109 -52.59 -147.92 REMARK 500 11 LYS A 111 -84.81 58.50 REMARK 500 11 HIS A 112 -71.30 66.08 REMARK 500 11 HIS A 172 -104.08 -103.73 REMARK 500 11 LYS A 177 109.41 -54.31 REMARK 500 11 ASP A 200 -65.02 -27.15 REMARK 500 11 PHE A 237 159.30 -48.07 REMARK 500 11 PHE A 248 72.81 57.43 REMARK 500 12 LYS A 111 -64.73 -158.27 REMARK 500 12 HIS A 112 -66.96 63.11 REMARK 500 12 THR A 154 78.04 -107.19 REMARK 500 12 HIS A 168 -36.01 -144.90 REMARK 500 12 ALA A 173 -122.36 41.14 REMARK 500 12 ASP A 175 4.50 -152.18 REMARK 500 12 PRO A 187 94.45 -68.69 REMARK 500 12 ASP A 198 90.51 -66.02 REMARK 500 12 HIS A 206 -154.39 -86.36 REMARK 500 12 PHE A 237 157.78 -49.56 REMARK 500 12 PHE A 248 82.89 52.61 REMARK 500 12 TYR A 262 82.29 -171.66 REMARK 500 13 LYS A 111 -62.13 -153.44 REMARK 500 13 HIS A 112 -69.48 61.00 REMARK 500 13 ASN A 119 -62.87 -102.57 REMARK 500 13 ASN A 153 33.27 -87.13 REMARK 500 13 ALA A 173 -73.65 -156.42 REMARK 500 13 ASP A 175 33.14 175.39 REMARK 500 13 PRO A 187 97.91 -69.28 REMARK 500 13 ASP A 198 93.55 -67.00 REMARK 500 13 HIS A 228 161.85 66.28 REMARK 500 13 SER A 230 16.03 -146.79 REMARK 500 13 ILE A 245 -41.00 72.21 REMARK 500 13 PHE A 248 110.82 -39.30 REMARK 500 13 LEU A 261 74.10 -56.19 REMARK 500 13 TYR A 262 110.33 -170.16 REMARK 500 14 ARG A 110 82.74 -176.40 REMARK 500 14 LYS A 111 -80.12 65.86 REMARK 500 14 HIS A 112 -80.27 60.34 REMARK 500 14 ASN A 153 27.37 -142.63 REMARK 500 14 THR A 154 78.46 -150.72 REMARK 500 14 HIS A 168 -52.95 -153.20 REMARK 500 14 ALA A 173 -171.06 60.78 REMARK 500 15 ARG A 110 42.60 38.44 REMARK 500 15 LYS A 111 -83.00 52.08 REMARK 500 15 HIS A 112 -66.50 56.27 REMARK 500 15 HIS A 168 -54.96 159.20 REMARK 500 15 HIS A 172 39.04 -71.15 REMARK 500 15 ASP A 175 44.51 -171.57 REMARK 500 15 ASP A 198 105.67 -57.00 REMARK 500 15 HIS A 228 110.66 68.81 REMARK 500 15 PHE A 237 160.15 -48.34 REMARK 500 15 ASP A 244 91.48 -66.09 REMARK 500 15 PHE A 248 81.78 50.38 REMARK 500 15 SER A 260 -18.77 -47.61 REMARK 500 15 TYR A 262 85.86 -170.63 REMARK 500 16 LYS A 111 -41.33 73.38 REMARK 500 16 HIS A 112 -61.54 69.72 REMARK 500 16 HIS A 168 -54.40 -134.05 REMARK 500 16 ALA A 173 168.61 66.16 REMARK 500 16 HIS A 228 165.17 70.04 REMARK 500 16 SER A 230 47.55 -80.34 REMARK 500 17 LYS A 111 -135.17 -104.53 REMARK 500 17 HIS A 112 -88.41 -139.35 REMARK 500 17 PRO A 146 19.79 -68.05 REMARK 500 17 HIS A 168 -37.57 -156.95 REMARK 500 17 ALA A 173 -55.03 -157.73 REMARK 500 17 ASP A 175 31.99 -179.38 REMARK 500 17 LYS A 177 98.36 -69.37 REMARK 500 17 ASP A 198 97.44 -68.67 REMARK 500 17 HIS A 206 -157.88 -85.25 REMARK 500 17 HIS A 228 -170.65 60.17 REMARK 500 17 PHE A 237 161.05 -48.86 REMARK 500 17 PHE A 248 73.99 46.48 REMARK 500 17 LEU A 261 -56.81 -29.37 REMARK 500 17 TYR A 262 -59.82 136.54 REMARK 500 18 HIS A 112 -62.23 64.28 REMARK 500 18 HIS A 168 50.70 -145.40 REMARK 500 18 ALA A 173 -102.79 -107.05 REMARK 500 18 ASP A 175 26.75 -168.85 REMARK 500 18 ASP A 198 95.58 -64.10 REMARK 500 18 SER A 230 52.22 -140.03 REMARK 500 18 ILE A 245 35.74 -81.43 REMARK 500 18 ASN A 246 -63.10 -109.30 REMARK 500 18 PHE A 248 89.38 55.36 REMARK 500 18 TYR A 262 -127.04 44.80 REMARK 500 19 LYS A 111 -56.98 -170.74 REMARK 500 19 HIS A 112 -64.83 69.29 REMARK 500 19 HIS A 168 34.44 -141.52 REMARK 500 19 ALA A 173 -151.39 58.44 REMARK 500 19 ASP A 175 -20.47 -140.72 REMARK 500 19 LYS A 177 -152.41 56.31 REMARK 500 19 HIS A 228 -169.53 57.73 REMARK 500 19 PHE A 248 83.21 51.12 REMARK 500 20 HIS A 112 -68.85 74.94 REMARK 500 20 MET A 125 -169.87 -101.49 REMARK 500 20 HIS A 168 -42.17 -159.76 REMARK 500 20 HIS A 172 -60.99 -98.47 REMARK 500 20 ALA A 173 -51.91 68.48 REMARK 500 20 ASP A 175 43.59 177.20 REMARK 500 20 GLU A 201 -178.44 -63.97 REMARK 500 20 HIS A 228 155.51 73.88 REMARK 500 20 PHE A 248 70.63 46.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 174 ASP A 175 9 -148.95 REMARK 500 ALA A 195 HIS A 196 9 -133.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 PHE A 202 0.08 SIDE_CHAIN REMARK 500 1 TYR A 242 0.11 SIDE_CHAIN REMARK 500 2 TYR A 121 0.08 SIDE_CHAIN REMARK 500 2 PHE A 149 0.08 SIDE_CHAIN REMARK 500 2 PHE A 163 0.10 SIDE_CHAIN REMARK 500 2 TYR A 242 0.09 SIDE_CHAIN REMARK 500 2 PHE A 248 0.09 SIDE_CHAIN REMARK 500 3 PHE A 174 0.09 SIDE_CHAIN REMARK 500 3 HIS A 196 0.32 SIDE_CHAIN REMARK 500 4 ARG A 117 0.10 SIDE_CHAIN REMARK 500 5 TYR A 132 0.06 SIDE_CHAIN REMARK 500 5 HIS A 218 0.10 SIDE_CHAIN REMARK 500 5 TYR A 242 0.09 SIDE_CHAIN REMARK 500 5 TYR A 262 0.07 SIDE_CHAIN REMARK 500 6 ARG A 117 0.08 SIDE_CHAIN REMARK 500 6 PHE A 174 0.11 SIDE_CHAIN REMARK 500 6 ASP A 194 0.07 SIDE_CHAIN REMARK 500 7 TYR A 113 0.10 SIDE_CHAIN REMARK 500 7 TYR A 116 0.12 SIDE_CHAIN REMARK 500 7 PHE A 149 0.11 SIDE_CHAIN REMARK 500 7 PHE A 174 0.09 SIDE_CHAIN REMARK 500 8 PHE A 163 0.08 SIDE_CHAIN REMARK 500 8 PHE A 213 0.08 SIDE_CHAIN REMARK 500 8 TYR A 262 0.08 SIDE_CHAIN REMARK 500 9 TYR A 116 0.17 SIDE_CHAIN REMARK 500 9 HIS A 196 0.16 SIDE_CHAIN REMARK 500 9 HIS A 218 0.19 SIDE_CHAIN REMARK 500 10 TYR A 121 0.08 SIDE_CHAIN REMARK 500 10 TYR A 132 0.08 SIDE_CHAIN REMARK 500 10 PHE A 248 0.11 SIDE_CHAIN REMARK 500 11 TYR A 116 0.07 SIDE_CHAIN REMARK 500 11 PHE A 163 0.10 SIDE_CHAIN REMARK 500 11 ASP A 194 0.07 SIDE_CHAIN REMARK 500 12 TYR A 121 0.11 SIDE_CHAIN REMARK 500 12 PHE A 163 0.09 SIDE_CHAIN REMARK 500 12 ASP A 194 0.07 SIDE_CHAIN REMARK 500 13 ARG A 110 0.09 SIDE_CHAIN REMARK 500 13 TYR A 132 0.07 SIDE_CHAIN REMARK 500 13 PHE A 213 0.09 SIDE_CHAIN REMARK 500 14 TYR A 116 0.08 SIDE_CHAIN REMARK 500 14 HIS A 196 0.14 SIDE_CHAIN REMARK 500 14 PHE A 197 0.10 SIDE_CHAIN REMARK 500 14 PHE A 213 0.08 SIDE_CHAIN REMARK 500 15 TYR A 116 0.09 SIDE_CHAIN REMARK 500 15 HIS A 168 0.14 SIDE_CHAIN REMARK 500 15 HIS A 222 0.10 SIDE_CHAIN REMARK 500 15 PHE A 248 0.10 SIDE_CHAIN REMARK 500 16 TYR A 116 0.10 SIDE_CHAIN REMARK 500 16 TYR A 121 0.14 SIDE_CHAIN REMARK 500 16 TYR A 240 0.07 SIDE_CHAIN REMARK 500 17 PHE A 174 0.10 SIDE_CHAIN REMARK 500 17 HIS A 196 0.18 SIDE_CHAIN REMARK 500 17 PHE A 197 0.08 SIDE_CHAIN REMARK 500 17 TYR A 242 0.11 SIDE_CHAIN REMARK 500 17 TYR A 262 0.10 SIDE_CHAIN REMARK 500 18 TYR A 121 0.09 SIDE_CHAIN REMARK 500 18 TYR A 242 0.08 SIDE_CHAIN REMARK 500 18 PHE A 248 0.14 SIDE_CHAIN REMARK 500 19 TYR A 121 0.09 SIDE_CHAIN REMARK 500 19 ASP A 124 0.11 SIDE_CHAIN REMARK 500 19 ARG A 127 0.09 SIDE_CHAIN REMARK 500 19 PHE A 174 0.09 SIDE_CHAIN REMARK 500 19 HIS A 196 0.18 SIDE_CHAIN REMARK 500 19 PHE A 202 0.10 SIDE_CHAIN REMARK 500 19 PHE A 248 0.11 SIDE_CHAIN REMARK 500 20 HIS A 196 0.17 SIDE_CHAIN REMARK 500 20 TYR A 262 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 264 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 218 NE2 REMARK 620 2 HIS A 222 NE2 76.8 REMARK 620 3 HIS A 228 NE2 117.2 83.9 REMARK 620 4 NGH A 269 O4 66.7 101.3 174.3 REMARK 620 5 NGH A 269 O5 92.7 147.3 127.6 46.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 265 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 168 NE2 REMARK 620 2 HIS A 183 NE2 148.2 REMARK 620 3 HIS A 196 ND1 91.1 80.2 REMARK 620 4 ASP A 170 OD1 106.3 94.5 152.5 REMARK 620 5 ASP A 170 OD2 95.3 109.6 144.6 17.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CA A 266 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD2 REMARK 620 2 GLU A 199 OE2 131.5 REMARK 620 3 GLU A 199 O 148.1 79.3 REMARK 620 4 GLU A 201 O 83.7 119.9 71.0 REMARK 620 5 ASP A 124 OD1 48.2 97.1 151.6 131.9 REMARK 620 6 GLU A 199 OE1 139.6 8.3 71.0 115.1 104.5 REMARK 620 7 THR A 122 OG1 73.9 57.8 135.1 117.8 56.1 65.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CA A 267 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 175 OD2 REMARK 620 2 GLY A 176 O 104.0 REMARK 620 3 GLY A 178 O 67.3 70.8 REMARK 620 4 ILE A 180 O 75.3 155.9 87.3 REMARK 620 5 ASP A 198 OD1 139.7 97.3 153.0 98.1 REMARK 620 6 GLU A 201 OE2 132.7 83.4 71.7 80.2 83.1 REMARK 620 7 ASP A 175 O 83.0 64.5 117.1 137.8 75.8 138.3 REMARK 620 8 ASP A 175 OD1 10.0 97.3 71.2 84.5 135.5 140.3 73.2 REMARK 620 9 ASP A 198 OD2 86.0 129.2 151.2 75.0 54.3 125.5 67.7 84.4 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CA A 268 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 190 O REMARK 620 2 GLY A 192 O 78.9 REMARK 620 3 ASP A 194 OD2 84.1 115.8 REMARK 620 4 ASP A 194 OD1 133.2 105.7 51.3 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 264 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 265 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 266 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 267 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 268 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NGH A 269
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CIRMMP48 RELATED DB: TARGETDB
DBREF 1YCM A 106 263 UNP P39900 MMP12_HUMAN 106 263
SEQADV 1YCM MET A 105 UNP P39900 INITIATING METHIONINE SEQADV 1YCM ASP A 171 UNP P39900 PHE 171 ENGINEERED
SEQRES 1 A 159 MET GLY PRO VAL TRP ARG LYS HIS TYR ILE THR TYR ARG SEQRES 2 A 159 ILE ASN ASN TYR THR PRO ASP MET ASN ARG GLU ASP VAL SEQRES 3 A 159 ASP TYR ALA ILE ARG LYS ALA PHE GLN VAL TRP SER ASN SEQRES 4 A 159 VAL THR PRO LEU LYS PHE SER LYS ILE ASN THR GLY MET SEQRES 5 A 159 ALA ASP ILE LEU VAL VAL PHE ALA ARG GLY ALA HIS GLY SEQRES 6 A 159 ASP ASP HIS ALA PHE ASP GLY LYS GLY GLY ILE LEU ALA SEQRES 7 A 159 HIS ALA PHE GLY PRO GLY SER GLY ILE GLY GLY ASP ALA SEQRES 8 A 159 HIS PHE ASP GLU ASP GLU PHE TRP THR THR HIS SER GLY SEQRES 9 A 159 GLY THR ASN LEU PHE LEU THR ALA VAL HIS GLU ILE GLY SEQRES 10 A 159 HIS SER LEU GLY LEU GLY HIS SER SER ASP PRO LYS ALA SEQRES 11 A 159 VAL MET PHE PRO THR TYR LYS TYR VAL ASP ILE ASN THR SEQRES 12 A 159 PHE ARG LEU SER ALA ASP ASP ILE ARG GLY ILE GLN SER SEQRES 13 A 159 LEU TYR GLY
HET ZN A 264 1 HET ZN A 265 1 HET CA A 266 1 HET CA A 267 1 HET CA A 268 1 HET NGH A 269 40
HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM NGH N-ISOBUTYL-N-[4-METHOXYPHENYLSULFONYL]GLYCYL HETNAM 2 NGH HYDROXAMIC ACID
FORMUL 2 ZN 2(ZN 2+) FORMUL 4 CA 3(CA 2+) FORMUL 7 NGH C13 H20 N2 O5 S
HELIX 1 1 ASN A 126 THR A 145 1 20 HELIX 2 2 LEU A 212 GLY A 225 1 14 HELIX 3 3 SER A 251 LEU A 261 1 11
SHEET 1 A 5 LYS A 148 LYS A 151 0 SHEET 2 A 5 TYR A 113 ILE A 118 1 N TYR A 116 O SER A 150 SHEET 3 A 5 ILE A 159 ALA A 164 1 O VAL A 161 N ARG A 117 SHEET 4 A 5 ALA A 195 ASP A 198 1 O PHE A 197 N VAL A 162 SHEET 5 A 5 ALA A 182 ALA A 184 -1 N HIS A 183 O HIS A 196 SHEET 1 B 2 TRP A 203 THR A 204 0 SHEET 2 B 2 THR A 210 ASN A 211 1 O THR A 210 N THR A 204
LINK ZN ZN A 264 NE2 HIS A 218 1555 1555 2.08 LINK ZN ZN A 264 NE2 HIS A 222 1555 1555 2.08 LINK ZN ZN A 264 NE2 HIS A 228 1555 1555 2.14 LINK ZN ZN A 265 NE2 HIS A 168 1555 1555 2.24 LINK ZN ZN A 265 NE2 HIS A 183 1555 1555 2.19 LINK ZN ZN A 265 ND1 HIS A 196 1555 1555 2.53 LINK ZN ZN A 265 OD1 ASP A 170 1555 1555 4.14 LINK CA CA A 266 OD2 ASP A 124 1555 1555 2.24 LINK CA CA A 266 OE2 GLU A 199 1555 1555 4.42 LINK CA CA A 266 O GLU A 199 1555 1555 2.31 LINK CA CA A 266 O GLU A 201 1555 1555 2.47 LINK CA CA A 267 OD2 ASP A 175 1555 1555 4.36 LINK CA CA A 267 O GLY A 176 1555 1555 2.46 LINK CA CA A 267 O GLY A 178 1555 1555 2.41 LINK CA CA A 267 O ILE A 180 1555 1555 2.42 LINK CA CA A 267 OD1 ASP A 198 1555 1555 2.31 LINK CA CA A 267 OE2 GLU A 201 1555 1555 2.23 LINK CA CA A 268 O GLY A 190 1555 1555 2.69 LINK CA CA A 268 O GLY A 192 1555 1555 2.42 LINK CA CA A 268 OD2 ASP A 194 1555 1555 2.60 LINK ZN ZN A 264 O4 NGH A 269 1555 1555 3.30 LINK ZN ZN A 264 O5 NGH A 269 1555 1555 3.58 LINK CA CA A 266 OD1 ASP A 124 1555 1555 2.81 LINK CA CA A 266 OE1 GLU A 199 1555 1555 2.25 LINK CA CA A 266 OG1 THR A 122 1555 1555 2.55 LINK OD2 ASP A 170 ZN ZN A 265 1555 1555 2.09 LINK O ASP A 175 CA CA A 267 1555 1555 2.41 LINK OD1 ASP A 175 CA CA A 267 1555 1555 2.23 LINK OD1 ASP A 194 CA CA A 268 1555 1555 2.22 LINK OD2 ASP A 198 CA CA A 267 1555 1555 2.40
SITE 1 AC1 4 HIS A 218 HIS A 222 HIS A 228 NGH A 269 SITE 1 AC2 4 HIS A 168 ASP A 170 HIS A 183 HIS A 196 SITE 1 AC3 4 THR A 122 ASP A 124 GLU A 199 GLU A 201 SITE 1 AC4 6 ASP A 175 GLY A 176 GLY A 178 ILE A 180 SITE 2 AC4 6 ASP A 198 GLU A 201 SITE 1 AC5 4 GLY A 190 ILE A 191 GLY A 192 ASP A 194 SITE 1 AC6 10 LEU A 181 ALA A 182 LEU A 214 THR A 215 SITE 2 AC6 10 HIS A 218 GLU A 219 PRO A 238 THR A 239 SITE 3 AC6 10 TYR A 240 ZN A 264
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000