1YCD - Header Asymmetric Unit

HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 22-DEC-04 1YCD

TITLE CRYSTAL STRUCTURE OF YEAST FSH1/YHR049W, A MEMBER OF THE TITLE 2 SERINE HYDROLASE FAMILY

COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL 27.3 KDA PROTEIN IN AAP1-SMF2 COMPND 3 INTERGENIC REGION; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: S. CEREVISIAE YHR049WP; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: YHR049W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28

KEYWDS ESTERASE, LIPASE, SERINE HYDROLASE, S. CEREVISIAE, KEYWDS 2 STRUCTURAL GENOMICS, PARIS-SUD YEAST STRUCTURAL GENOMICS, KEYWDS 3 YSG, UNKNOWN FUNCTION

EXPDTA X-RAY DIFFRACTION

AUTHOR N.LEULLIOT,M.GRAILLE,F.COSTE,S.QUEVILLON-CHERUEL,J.JANIN, AUTHOR 2 H.VAN TILBEURGH,PARIS-SUD YEAST STRUCTURAL GENOMICS (YSG)

REVDAT 2 24-FEB-09 1YCD 1 VERSN REVDAT 1 10-MAY-05 1YCD 0

JRNL AUTH S.QUEVILLON-CHERUEL,N.LEULLIOT,M.GRAILLE, JRNL AUTH 2 N.HERVOUET,F.COSTE,C.ZELWER,J.JANIN,H.VAN TILBEURGH JRNL TITL CRYSTAL STRUCTURE OF YEAST YHR049W/FSH1, A MEMBER JRNL TITL 2 OF THE SERINE HYDROLASE FAMILY. JRNL REF PROTEIN SCI. V. 14 1350 2005 JRNL REFN ISSN 0961-8368 JRNL PMID 15802654 JRNL DOI 10.1110/PS.051415905

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 54126 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2873 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3622 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 167 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3769 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 936 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.56000 REMARK 3 B22 (A**2) : 0.99000 REMARK 3 B33 (A**2) : -0.47000 REMARK 3 B12 (A**2) : 0.18000 REMARK 3 B13 (A**2) : -0.04000 REMARK 3 B23 (A**2) : -0.39000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.107 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.958 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3880 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5242 ; 1.283 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 469 ; 5.071 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 171 ;32.863 ;25.205 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 697 ;12.056 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;17.767 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 574 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2887 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2007 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2669 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 694 ; 0.136 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 59 ; 0.152 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 65 ; 0.125 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2439 ; 0.797 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3840 ; 1.260 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1623 ; 2.060 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1402 ; 3.358 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS

REMARK 4 REMARK 4 1YCD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-05. REMARK 100 THE RCSB ID CODE IS RCSB031371.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57009 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 1.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.16500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG 4K, 0.1M MES, PH 5.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 240 REMARK 465 ALA A 241 REMARK 465 SER A 242 REMARK 465 GLU A 243 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 VAL B 3 REMARK 465 SER B 242 REMARK 465 GLU B 243

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 109 C SER A 110 N 0.149 REMARK 500 SER A 110 C GLN A 111 N 0.310 REMARK 500 LEU B 109 C SER B 110 N 0.210 REMARK 500 SER B 110 C GLN B 111 N 0.282 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER B 110 O - C - N ANGL. DEV. = -9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 110 -106.68 50.75 REMARK 500 ASP A 129 -10.46 80.19 REMARK 500 SER B 110 -111.96 51.75 REMARK 500 ASP B 129 -3.94 74.97 REMARK 500 GLN B 202 30.40 -97.47 REMARK 500 REMARK 500 REMARK: NULL

REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1010 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH B1074 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH B1193 DISTANCE = 8.33 ANGSTROMS REMARK 525 HOH A1205 DISTANCE = 5.39 ANGSTROMS REMARK 525 HOH B1205 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH B1216 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH B1240 DISTANCE = 5.74 ANGSTROMS

REMARK 600 REMARK 600 HETEROGEN REMARK 600 THE AUTHOR STATES THAT THE LI5 RESIDUE REMARK 600 IN MOLECULE B DOES NOT CONTAIN C32 ATOM REMARK 600 BECAUSE THIS ATOM WAS NOT DETECTED IN THE REMARK 600 ELECTRON DENSITY FOR MOLECULE B BUT WAS REMARK 600 DETECTED IN MOLECULE A.

REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LI5 B 800

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LI5 A 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LI5 B 800

DBREF 1YCD A 1 243 UNP P38777 YHK9_YEAST 1 243 DBREF 1YCD B 1 243 UNP P38777 YHK9_YEAST 1 243

SEQADV 1YCD LEU A 109 UNP P38777 PHE 109 ENGINEERED SEQADV 1YCD LEU B 109 UNP P38777 PHE 109 ENGINEERED

SEQRES 1 A 243 MET THR VAL GLN ILE PRO LYS LEU LEU PHE LEU HIS GLY SEQRES 2 A 243 PHE LEU GLN ASN GLY LYS VAL PHE SER GLU LYS SER SER SEQRES 3 A 243 GLY ILE ARG LYS LEU LEU LYS LYS ALA ASN VAL GLN CYS SEQRES 4 A 243 ASP TYR ILE ASP ALA PRO VAL LEU LEU GLU LYS LYS ASP SEQRES 5 A 243 LEU PRO PHE GLU MET ASP ASP GLU LYS TRP GLN ALA THR SEQRES 6 A 243 LEU ASP ALA ASP VAL ASN ARG ALA TRP PHE TYR HIS SER SEQRES 7 A 243 GLU ILE SER HIS GLU LEU ASP ILE SER GLU GLY LEU LYS SEQRES 8 A 243 SER VAL VAL ASP HIS ILE LYS ALA ASN GLY PRO TYR ASP SEQRES 9 A 243 GLY ILE VAL GLY LEU SER GLN GLY ALA ALA LEU SER SER SEQRES 10 A 243 ILE ILE THR ASN LYS ILE SER GLU LEU VAL PRO ASP HIS SEQRES 11 A 243 PRO GLN PHE LYS VAL SER VAL VAL ILE SER GLY TYR SER SEQRES 12 A 243 PHE THR GLU PRO ASP PRO GLU HIS PRO GLY GLU LEU ARG SEQRES 13 A 243 ILE THR GLU LYS PHE ARG ASP SER PHE ALA VAL LYS PRO SEQRES 14 A 243 ASP MET LYS THR LYS MET ILE PHE ILE TYR GLY ALA SER SEQRES 15 A 243 ASP GLN ALA VAL PRO SER VAL ARG SER LYS TYR LEU TYR SEQRES 16 A 243 ASP ILE TYR LEU LYS ALA GLN ASN GLY ASN LYS GLU LYS SEQRES 17 A 243 VAL LEU ALA TYR GLU HIS PRO GLY GLY HIS MET VAL PRO SEQRES 18 A 243 ASN LYS LYS ASP ILE ILE ARG PRO ILE VAL GLU GLN ILE SEQRES 19 A 243 THR SER SER LEU GLN GLU ALA SER GLU SEQRES 1 B 243 MET THR VAL GLN ILE PRO LYS LEU LEU PHE LEU HIS GLY SEQRES 2 B 243 PHE LEU GLN ASN GLY LYS VAL PHE SER GLU LYS SER SER SEQRES 3 B 243 GLY ILE ARG LYS LEU LEU LYS LYS ALA ASN VAL GLN CYS SEQRES 4 B 243 ASP TYR ILE ASP ALA PRO VAL LEU LEU GLU LYS LYS ASP SEQRES 5 B 243 LEU PRO PHE GLU MET ASP ASP GLU LYS TRP GLN ALA THR SEQRES 6 B 243 LEU ASP ALA ASP VAL ASN ARG ALA TRP PHE TYR HIS SER SEQRES 7 B 243 GLU ILE SER HIS GLU LEU ASP ILE SER GLU GLY LEU LYS SEQRES 8 B 243 SER VAL VAL ASP HIS ILE LYS ALA ASN GLY PRO TYR ASP SEQRES 9 B 243 GLY ILE VAL GLY LEU SER GLN GLY ALA ALA LEU SER SER SEQRES 10 B 243 ILE ILE THR ASN LYS ILE SER GLU LEU VAL PRO ASP HIS SEQRES 11 B 243 PRO GLN PHE LYS VAL SER VAL VAL ILE SER GLY TYR SER SEQRES 12 B 243 PHE THR GLU PRO ASP PRO GLU HIS PRO GLY GLU LEU ARG SEQRES 13 B 243 ILE THR GLU LYS PHE ARG ASP SER PHE ALA VAL LYS PRO SEQRES 14 B 243 ASP MET LYS THR LYS MET ILE PHE ILE TYR GLY ALA SER SEQRES 15 B 243 ASP GLN ALA VAL PRO SER VAL ARG SER LYS TYR LEU TYR SEQRES 16 B 243 ASP ILE TYR LEU LYS ALA GLN ASN GLY ASN LYS GLU LYS SEQRES 17 B 243 VAL LEU ALA TYR GLU HIS PRO GLY GLY HIS MET VAL PRO SEQRES 18 B 243 ASN LYS LYS ASP ILE ILE ARG PRO ILE VAL GLU GLN ILE SEQRES 19 B 243 THR SER SER LEU GLN GLU ALA SER GLU

HET LI5 A 800 14 HET LI5 B 800 13

HETNAM LI5 2-HYDROXY-4,5-DIOXOHEPTYL HYDROGEN PHOSPHONATE

FORMUL 3 LI5 2(C7 H13 O6 P) FORMUL 5 HOH *936(H2 O)

HELIX 1 1 ASN A 17 SER A 25 1 9 HELIX 2 2 SER A 25 ALA A 35 1 11 HELIX 3 3 GLU A 49 LEU A 53 5 5 HELIX 4 4 ASP A 58 ALA A 68 1 11 HELIX 5 5 ILE A 80 LEU A 84 5 5 HELIX 6 6 ILE A 86 GLY A 101 1 16 HELIX 7 7 SER A 110 VAL A 127 1 18 HELIX 8 8 GLU A 159 ARG A 162 5 4 HELIX 9 9 PRO A 187 GLN A 202 1 16 HELIX 10 10 LYS A 223 GLN A 239 1 17 HELIX 11 11 ASN B 17 SER B 25 1 9 HELIX 12 12 SER B 25 ALA B 35 1 11 HELIX 13 13 GLU B 49 LEU B 53 5 5 HELIX 14 14 ASP B 58 ALA B 68 1 11 HELIX 15 15 ILE B 80 LEU B 84 5 5 HELIX 16 16 ILE B 86 GLY B 101 1 16 HELIX 17 17 SER B 110 VAL B 127 1 18 HELIX 18 18 GLU B 159 ARG B 162 5 4 HELIX 19 19 PRO B 187 GLN B 202 1 16 HELIX 20 20 LYS B 223 GLN B 239 1 17

SHEET 1 A 6 GLN A 38 ILE A 42 0 SHEET 2 A 6 LYS A 7 LEU A 11 1 N LEU A 8 O GLN A 38 SHEET 3 A 6 GLY A 105 LEU A 109 1 O VAL A 107 N LEU A 11 SHEET 4 A 6 VAL A 135 ILE A 139 1 O VAL A 137 N ILE A 106 SHEET 5 A 6 LYS A 174 GLY A 180 1 O ILE A 176 N SER A 136 SHEET 6 A 6 VAL A 209 HIS A 214 1 O LEU A 210 N PHE A 177 SHEET 1 B 2 VAL A 46 LEU A 47 0 SHEET 2 B 2 ARG A 72 ALA A 73 -1 O ALA A 73 N VAL A 46 SHEET 1 C 2 THR A 145 PRO A 147 0 SHEET 2 C 2 LEU A 155 ILE A 157 -1 O ARG A 156 N GLU A 146 SHEET 1 D 6 GLN B 38 ILE B 42 0 SHEET 2 D 6 LYS B 7 LEU B 11 1 N PHE B 10 O ASP B 40 SHEET 3 D 6 GLY B 105 LEU B 109 1 O VAL B 107 N LEU B 11 SHEET 4 D 6 VAL B 135 ILE B 139 1 O VAL B 137 N ILE B 106 SHEET 5 D 6 LYS B 174 GLY B 180 1 O ILE B 176 N VAL B 138 SHEET 6 D 6 VAL B 209 HIS B 214 1 O LEU B 210 N MET B 175 SHEET 1 E 2 VAL B 46 LEU B 47 0 SHEET 2 E 2 ARG B 72 ALA B 73 -1 O ALA B 73 N VAL B 46 SHEET 1 F 2 THR B 145 PRO B 147 0 SHEET 2 F 2 LEU B 155 ILE B 157 -1 O ARG B 156 N GLU B 146

LINK OG SER A 110 P LI5 A 800 1555 1555 1.62 LINK OG SER B 110 P LI5 B 800 1555 1555 1.63

CISPEP 1 VAL A 3 GLN A 4 0 -0.39 CISPEP 2 GLY A 101 PRO A 102 0 3.85 CISPEP 3 GLY B 101 PRO B 102 0 0.19

SITE 1 AC1 10 GLY A 13 PHE A 14 PHE A 55 HIS A 77 SITE 2 AC1 10 SER A 110 GLN A 111 ALA A 185 HIS A 218 SITE 3 AC1 10 HOH A1030 HOH A1084 SITE 1 AC2 9 GLY B 13 PHE B 14 PHE B 55 SER B 110 SITE 2 AC2 9 GLN B 111 HIS B 218 HOH B1041 HOH B1043 SITE 3 AC2 9 HOH B1259

CRYST1 46.133 53.329 64.271 102.85 90.04 112.47 P 1 2

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.021676 0.008966 0.002239 0.00000

SCALE2 0.000000 0.020292 0.005036 0.00000

SCALE3 0.000000 0.000000 0.016031 0.00000