10 20 30 40 50 60 70 80 1Y8G - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SIGNALING PROTEIN,TRANSFERASE 12-DEC-04 1Y8G
TITLE CATALYTIC AND UBIQUTIN-ASSOCIATED DOMAINS OF MARK2/PAR-1: TITLE 2 INACTIVE DOUBLE MUTANT WITH SELENOMETHIONINE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAP/MICROTUBULE AFFINITY-REGULATING KINASE 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC AND UBIQUITIN-ASSOCIATED DOMAINS, COMPND 5 RESIDUES 39-364; COMPND 6 SYNONYM: PAR-1; KIN1; SERINE/THREONINE KINASE EMK; COMPND 7 EC: 2.7.1.37; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: MARK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834(DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST17
KEYWDS SERINE/THREONINE PROTEIN KINASE; MARK; PAR-1; KIN1; UBA KEYWDS 2 DOMAIN, SIGNALING PROTEIN,TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR S.PANNEERSELVAM,A.MARX,E.-M.MANDELKOW,E.MANDELKOW
REVDAT 2 24-FEB-09 1Y8G 1 VERSN REVDAT 1 14-FEB-06 1Y8G 0
JRNL AUTH S.PANNEERSELVAM,A.MARX,E.M.MANDELKOW,E.MANDELKOW JRNL TITL STRUCTURE OF THE CATALYTIC AND JRNL TITL 2 UBIQUITIN-ASSOCIATED DOMAINS OF THE PROTEIN KINASE JRNL TITL 3 MARK/PAR-1. JRNL REF STRUCTURE V. 14 173 2006 JRNL REFN ISSN 0969-2126 JRNL PMID 16472737 JRNL DOI 10.1016/J.STR.2005.09.022
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29259 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1514 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2057 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4913 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 158 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.35000 REMARK 3 B22 (A**2) : 0.35000 REMARK 3 B33 (A**2) : -0.53000 REMARK 3 B12 (A**2) : 0.18000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.415 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.292 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.212 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.664 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5010 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6742 ; 1.527 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 600 ; 6.249 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 230 ;33.035 ;23.957 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 969 ;19.696 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;19.370 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 742 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3692 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2383 ; 0.232 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3414 ; 0.318 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 263 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 76 ; 0.170 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.187 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3089 ; 0.936 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4855 ; 1.468 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2185 ; 2.249 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1887 ; 3.368 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 1Y8G COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-05. REMARK 100 THE RCSB ID CODE IS RCSB031247.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8031 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29259 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.501 REMARK 200 RESOLUTION RANGE LOW (A) : 46.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.260 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: PHASER, MLPHARE REMARK 200 STARTING MODEL: PARTIALLY REFINED MODEL OF A SIMILAR CONSTRUCT REMARK 200 OBTAINED BY COMBINATION OF MR AND MIR REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 5000 MME, TACSIMATE, BIS-TRIS, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.12667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.25333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.69000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 87.81667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 17.56333 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 38 REMARK 465 ASN A 39 REMARK 465 SER A 40 REMARK 465 ALA A 41 REMARK 465 THR A 42 REMARK 465 SER A 43 REMARK 465 ALA A 44 REMARK 465 ASP A 45 REMARK 465 GLU A 46 REMARK 465 GLN A 47 REMARK 465 PRO A 48 REMARK 465 ASP A 193 REMARK 465 PHE A 194 REMARK 465 GLY A 195 REMARK 465 PHE A 196 REMARK 465 SER A 197 REMARK 465 ASN A 198 REMARK 465 GLU A 199 REMARK 465 PHE A 200 REMARK 465 THR A 201 REMARK 465 PHE A 202 REMARK 465 GLY A 203 REMARK 465 ASN A 204 REMARK 465 LYS A 205 REMARK 465 LYS A 364 REMARK 465 GLY B 38 REMARK 465 ASN B 39 REMARK 465 SER B 40 REMARK 465 ALA B 41 REMARK 465 THR B 42 REMARK 465 SER B 43 REMARK 465 ALA B 44 REMARK 465 ASP B 45 REMARK 465 GLU B 46 REMARK 465 GLN B 47 REMARK 465 ASP B 193 REMARK 465 PHE B 194 REMARK 465 GLY B 195 REMARK 465 PHE B 196 REMARK 465 SER B 197 REMARK 465 ASN B 198 REMARK 465 GLU B 199 REMARK 465 PHE B 200 REMARK 465 THR B 201 REMARK 465 PHE B 202 REMARK 465 GLY B 203 REMARK 465 ASN B 204 REMARK 465 LYS B 205 REMARK 465 TYR B 363 REMARK 465 LYS B 364
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 260 CG CD OE1 OE2 REMARK 470 ARG A 264 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 268 CG CD NE CZ NH1 NH2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 377 O HOH B 421 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 56 -132.06 -108.22 REMARK 500 PHE A 170 18.93 59.68 REMARK 500 ARG A 174 -24.97 80.28 REMARK 500 ASP A 175 57.94 -143.75 REMARK 500 GLU A 179 -35.92 -39.35 REMARK 500 ASP A 207 -163.48 -118.55 REMARK 500 ASN A 352 -162.91 -115.14 REMARK 500 LEU B 56 -88.36 -91.56 REMARK 500 ARG B 174 -20.61 78.13 REMARK 500 ASP B 175 50.23 -150.43 REMARK 500 ALA B 208 -16.15 -43.57 REMARK 500 ASP B 227 -22.98 -148.20 REMARK 500 ASP B 311 35.07 -159.92 REMARK 500 ASP B 322 79.46 -110.46 REMARK 500 LYS B 324 30.67 -140.92 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZMU RELATED DB: PDB REMARK 900 RELATED ID: 1ZMV RELATED DB: PDB REMARK 900 RELATED ID: 1ZMW RELATED DB: PDB
DBREF 1Y8G A 39 364 EMBL 2052191 CAB06295 39 364 DBREF 1Y8G B 39 364 EMBL 2052191 CAB06295 39 364
SEQADV 1Y8G GLY A 38 EMBL 2052191 INSERTION SEQADV 1Y8G MSE A 104 EMBL 2052191 MET 104 MODIFIED RESIDUE SEQADV 1Y8G MSE A 129 EMBL 2052191 MET 129 MODIFIED RESIDUE SEQADV 1Y8G MSE A 147 EMBL 2052191 MET 147 MODIFIED RESIDUE SEQADV 1Y8G MSE A 187 EMBL 2052191 MET 187 MODIFIED RESIDUE SEQADV 1Y8G ALA A 208 EMBL 2052191 THR 208 ENGINEERED SEQADV 1Y8G ALA A 212 EMBL 2052191 SER 212 ENGINEERED SEQADV 1Y8G MSE A 273 EMBL 2052191 MET 273 MODIFIED RESIDUE SEQADV 1Y8G MSE A 299 EMBL 2052191 MET 299 MODIFIED RESIDUE SEQADV 1Y8G MSE A 304 EMBL 2052191 MET 304 MODIFIED RESIDUE SEQADV 1Y8G MSE A 332 EMBL 2052191 MET 332 MODIFIED RESIDUE SEQADV 1Y8G MSE A 335 EMBL 2052191 MET 335 MODIFIED RESIDUE SEQADV 1Y8G MSE A 355 EMBL 2052191 MET 355 MODIFIED RESIDUE SEQADV 1Y8G GLY B 38 EMBL 2052191 INSERTION SEQADV 1Y8G MSE B 104 EMBL 2052191 MET 104 MODIFIED RESIDUE SEQADV 1Y8G MSE B 129 EMBL 2052191 MET 129 MODIFIED RESIDUE SEQADV 1Y8G MSE B 147 EMBL 2052191 MET 147 MODIFIED RESIDUE SEQADV 1Y8G MSE B 187 EMBL 2052191 MET 187 MODIFIED RESIDUE SEQADV 1Y8G ALA B 208 EMBL 2052191 THR 208 ENGINEERED SEQADV 1Y8G ALA B 212 EMBL 2052191 SER 212 ENGINEERED SEQADV 1Y8G MSE B 273 EMBL 2052191 MET 273 MODIFIED RESIDUE SEQADV 1Y8G MSE B 299 EMBL 2052191 MET 299 MODIFIED RESIDUE SEQADV 1Y8G MSE B 304 EMBL 2052191 MET 304 MODIFIED RESIDUE SEQADV 1Y8G MSE B 332 EMBL 2052191 MET 332 MODIFIED RESIDUE SEQADV 1Y8G MSE B 335 EMBL 2052191 MET 335 MODIFIED RESIDUE SEQADV 1Y8G MSE B 355 EMBL 2052191 MET 355 MODIFIED RESIDUE
SEQRES 1 A 327 GLY ASN SER ALA THR SER ALA ASP GLU GLN PRO HIS ILE SEQRES 2 A 327 GLY ASN TYR ARG LEU LEU LYS THR ILE GLY LYS GLY ASN SEQRES 3 A 327 PHE ALA LYS VAL LYS LEU ALA ARG HIS ILE LEU THR GLY SEQRES 4 A 327 LYS GLU VAL ALA VAL LYS ILE ILE ASP LYS THR GLN LEU SEQRES 5 A 327 ASN SER SER SER LEU GLN LYS LEU PHE ARG GLU VAL ARG SEQRES 6 A 327 ILE MSE LYS VAL LEU ASN HIS PRO ASN ILE VAL LYS LEU SEQRES 7 A 327 PHE GLU VAL ILE GLU THR GLU LYS THR LEU TYR LEU VAL SEQRES 8 A 327 MSE GLU TYR ALA SER GLY GLY GLU VAL PHE ASP TYR LEU SEQRES 9 A 327 VAL ALA HIS GLY ARG MSE LYS GLU LYS GLU ALA ARG ALA SEQRES 10 A 327 LYS PHE ARG GLN ILE VAL SER ALA VAL GLN TYR CYS HIS SEQRES 11 A 327 GLN LYS PHE ILE VAL HIS ARG ASP LEU LYS ALA GLU ASN SEQRES 12 A 327 LEU LEU LEU ASP ALA ASP MSE ASN ILE LYS ILE ALA ASP SEQRES 13 A 327 PHE GLY PHE SER ASN GLU PHE THR PHE GLY ASN LYS LEU SEQRES 14 A 327 ASP ALA PHE CYS GLY ALA PRO PRO TYR ALA ALA PRO GLU SEQRES 15 A 327 LEU PHE GLN GLY LYS LYS TYR ASP GLY PRO GLU VAL ASP SEQRES 16 A 327 VAL TRP SER LEU GLY VAL ILE LEU TYR THR LEU VAL SER SEQRES 17 A 327 GLY SER LEU PRO PHE ASP GLY GLN ASN LEU LYS GLU LEU SEQRES 18 A 327 ARG GLU ARG VAL LEU ARG GLY LYS TYR ARG ILE PRO PHE SEQRES 19 A 327 TYR MSE SER THR ASP CYS GLU ASN LEU LEU LYS LYS PHE SEQRES 20 A 327 LEU ILE LEU ASN PRO SER LYS ARG GLY THR LEU GLU GLN SEQRES 21 A 327 ILE MSE LYS ASP ARG TRP MSE ASN VAL GLY HIS GLU ASP SEQRES 22 A 327 ASP GLU LEU LYS PRO TYR VAL GLU PRO LEU PRO ASP TYR SEQRES 23 A 327 LYS ASP PRO ARG ARG THR GLU LEU MSE VAL SER MSE GLY SEQRES 24 A 327 TYR THR ARG GLU GLU ILE GLN ASP SER LEU VAL GLY GLN SEQRES 25 A 327 ARG TYR ASN GLU VAL MSE ALA THR TYR LEU LEU LEU GLY SEQRES 26 A 327 TYR LYS SEQRES 1 B 327 GLY ASN SER ALA THR SER ALA ASP GLU GLN PRO HIS ILE SEQRES 2 B 327 GLY ASN TYR ARG LEU LEU LYS THR ILE GLY LYS GLY ASN SEQRES 3 B 327 PHE ALA LYS VAL LYS LEU ALA ARG HIS ILE LEU THR GLY SEQRES 4 B 327 LYS GLU VAL ALA VAL LYS ILE ILE ASP LYS THR GLN LEU SEQRES 5 B 327 ASN SER SER SER LEU GLN LYS LEU PHE ARG GLU VAL ARG SEQRES 6 B 327 ILE MSE LYS VAL LEU ASN HIS PRO ASN ILE VAL LYS LEU SEQRES 7 B 327 PHE GLU VAL ILE GLU THR GLU LYS THR LEU TYR LEU VAL SEQRES 8 B 327 MSE GLU TYR ALA SER GLY GLY GLU VAL PHE ASP TYR LEU SEQRES 9 B 327 VAL ALA HIS GLY ARG MSE LYS GLU LYS GLU ALA ARG ALA SEQRES 10 B 327 LYS PHE ARG GLN ILE VAL SER ALA VAL GLN TYR CYS HIS SEQRES 11 B 327 GLN LYS PHE ILE VAL HIS ARG ASP LEU LYS ALA GLU ASN SEQRES 12 B 327 LEU LEU LEU ASP ALA ASP MSE ASN ILE LYS ILE ALA ASP SEQRES 13 B 327 PHE GLY PHE SER ASN GLU PHE THR PHE GLY ASN LYS LEU SEQRES 14 B 327 ASP ALA PHE CYS GLY ALA PRO PRO TYR ALA ALA PRO GLU SEQRES 15 B 327 LEU PHE GLN GLY LYS LYS TYR ASP GLY PRO GLU VAL ASP SEQRES 16 B 327 VAL TRP SER LEU GLY VAL ILE LEU TYR THR LEU VAL SER SEQRES 17 B 327 GLY SER LEU PRO PHE ASP GLY GLN ASN LEU LYS GLU LEU SEQRES 18 B 327 ARG GLU ARG VAL LEU ARG GLY LYS TYR ARG ILE PRO PHE SEQRES 19 B 327 TYR MSE SER THR ASP CYS GLU ASN LEU LEU LYS LYS PHE SEQRES 20 B 327 LEU ILE LEU ASN PRO SER LYS ARG GLY THR LEU GLU GLN SEQRES 21 B 327 ILE MSE LYS ASP ARG TRP MSE ASN VAL GLY HIS GLU ASP SEQRES 22 B 327 ASP GLU LEU LYS PRO TYR VAL GLU PRO LEU PRO ASP TYR SEQRES 23 B 327 LYS ASP PRO ARG ARG THR GLU LEU MSE VAL SER MSE GLY SEQRES 24 B 327 TYR THR ARG GLU GLU ILE GLN ASP SER LEU VAL GLY GLN SEQRES 25 B 327 ARG TYR ASN GLU VAL MSE ALA THR TYR LEU LEU LEU GLY SEQRES 26 B 327 TYR LYS
MODRES 1Y8G MSE A 104 MET SELENOMETHIONINE MODRES 1Y8G MSE A 129 MET SELENOMETHIONINE MODRES 1Y8G MSE A 147 MET SELENOMETHIONINE MODRES 1Y8G MSE A 187 MET SELENOMETHIONINE MODRES 1Y8G MSE A 273 MET SELENOMETHIONINE MODRES 1Y8G MSE A 299 MET SELENOMETHIONINE MODRES 1Y8G MSE A 304 MET SELENOMETHIONINE MODRES 1Y8G MSE A 332 MET SELENOMETHIONINE MODRES 1Y8G MSE A 335 MET SELENOMETHIONINE MODRES 1Y8G MSE A 355 MET SELENOMETHIONINE MODRES 1Y8G MSE B 104 MET SELENOMETHIONINE MODRES 1Y8G MSE B 129 MET SELENOMETHIONINE MODRES 1Y8G MSE B 147 MET SELENOMETHIONINE MODRES 1Y8G MSE B 187 MET SELENOMETHIONINE MODRES 1Y8G MSE B 273 MET SELENOMETHIONINE MODRES 1Y8G MSE B 299 MET SELENOMETHIONINE MODRES 1Y8G MSE B 304 MET SELENOMETHIONINE MODRES 1Y8G MSE B 332 MET SELENOMETHIONINE MODRES 1Y8G MSE B 335 MET SELENOMETHIONINE MODRES 1Y8G MSE B 355 MET SELENOMETHIONINE
HET MSE A 104 11 HET MSE A 129 8 HET MSE A 147 8 HET MSE A 187 11 HET MSE A 273 8 HET MSE A 299 8 HET MSE A 304 8 HET MSE A 332 8 HET MSE A 335 8 HET MSE A 355 8 HET MSE B 104 11 HET MSE B 129 8 HET MSE B 147 8 HET MSE B 187 11 HET MSE B 273 8 HET MSE B 299 8 HET MSE B 304 8 HET MSE B 332 8 HET MSE B 335 8 HET MSE B 355 8
HETNAM MSE SELENOMETHIONINE
FORMUL 1 MSE 20(C5 H11 N O2 SE) FORMUL 3 HOH *158(H2 O)
HELIX 1 1 THR A 87 LEU A 89 5 3 HELIX 2 2 ASN A 90 LEU A 107 1 18 HELIX 3 3 GLU A 136 GLY A 145 1 10 HELIX 4 4 LYS A 148 LYS A 169 1 22 HELIX 5 5 LYS A 177 GLU A 179 5 3 HELIX 6 6 ALA A 212 ALA A 216 5 5 HELIX 7 7 ALA A 217 GLY A 223 5 7 HELIX 8 8 GLY A 228 GLY A 246 1 19 HELIX 9 9 ASN A 254 GLY A 265 1 12 HELIX 10 10 SER A 274 LEU A 285 1 12 HELIX 11 11 ASN A 288 ARG A 292 5 5 HELIX 12 12 THR A 294 MSE A 299 1 6 HELIX 13 13 ASP A 301 VAL A 306 1 6 HELIX 14 14 ASP A 325 GLY A 336 1 12 HELIX 15 15 THR A 338 GLY A 348 1 11 HELIX 16 16 ASN A 352 LEU A 361 1 10 HELIX 17 17 THR B 87 LEU B 89 5 3 HELIX 18 18 ASN B 90 LYS B 105 1 16 HELIX 19 19 GLU B 136 GLY B 145 1 10 HELIX 20 20 LYS B 148 LYS B 169 1 22 HELIX 21 21 ALA B 212 ALA B 216 5 5 HELIX 22 22 ALA B 217 GLY B 223 5 7 HELIX 23 23 GLY B 228 GLY B 246 1 19 HELIX 24 24 ASN B 254 GLY B 265 1 12 HELIX 25 25 SER B 274 LEU B 285 1 12 HELIX 26 26 ASN B 288 ARG B 292 5 5 HELIX 27 27 THR B 294 MSE B 299 1 6 HELIX 28 28 ASP B 301 VAL B 306 1 6 HELIX 29 29 ASP B 325 MSE B 335 1 11 HELIX 30 30 THR B 338 GLY B 348 1 11 HELIX 31 31 ASN B 352 LEU B 361 1 10
SHEET 1 A 5 TYR A 53 LYS A 61 0 SHEET 2 A 5 ALA A 65 HIS A 72 -1 O LEU A 69 N LYS A 57 SHEET 3 A 5 GLU A 78 ASP A 85 -1 O ILE A 83 N LYS A 66 SHEET 4 A 5 THR A 124 MSE A 129 -1 O LEU A 125 N ILE A 84 SHEET 5 A 5 LEU A 115 GLU A 120 -1 N GLU A 117 O VAL A 128 SHEET 1 B 2 LEU A 181 LEU A 183 0 SHEET 2 B 2 ILE A 189 ILE A 191 -1 O LYS A 190 N LEU A 182 SHEET 1 C 5 TYR B 53 LYS B 61 0 SHEET 2 C 5 ALA B 65 HIS B 72 -1 O LEU B 69 N LYS B 57 SHEET 3 C 5 GLU B 78 ASP B 85 -1 O ILE B 83 N LYS B 66 SHEET 4 C 5 THR B 124 MSE B 129 -1 O LEU B 125 N ILE B 84 SHEET 5 C 5 LEU B 115 GLU B 120 -1 N PHE B 116 O VAL B 128 SHEET 1 D 2 LEU B 181 LEU B 183 0 SHEET 2 D 2 ILE B 189 ILE B 191 -1 O LYS B 190 N LEU B 182
SSBOND 1 CYS A 210 CYS B 210 1555 1555 2.05
LINK C ILE A 103 N MSE A 104 1555 1555 1.32 LINK C MSE A 104 N LYS A 105 1555 1555 1.33 LINK C VAL A 128 N MSE A 129 1555 1555 1.33 LINK C MSE A 129 N GLU A 130 1555 1555 1.33 LINK C ARG A 146 N MSE A 147 1555 1555 1.33 LINK C MSE A 147 N LYS A 148 1555 1555 1.32 LINK C ASP A 186 N MSE A 187 1555 1555 1.33 LINK C MSE A 187 N ASN A 188 1555 1555 1.33 LINK C TYR A 272 N MSE A 273 1555 1555 1.33 LINK C MSE A 273 N SER A 274 1555 1555 1.32 LINK C ILE A 298 N MSE A 299 1555 1555 1.33 LINK C MSE A 299 N LYS A 300 1555 1555 1.32 LINK C TRP A 303 N MSE A 304 1555 1555 1.33 LINK C MSE A 304 N ASN A 305 1555 1555 1.33 LINK C LEU A 331 N MSE A 332 1555 1555 1.34 LINK C MSE A 332 N VAL A 333 1555 1555 1.33 LINK C SER A 334 N MSE A 335 1555 1555 1.34 LINK C MSE A 335 N GLY A 336 1555 1555 1.34 LINK C VAL A 354 N MSE A 355 1555 1555 1.32 LINK C MSE A 355 N ALA A 356 1555 1555 1.33 LINK C ILE B 103 N MSE B 104 1555 1555 1.33 LINK C MSE B 104 N LYS B 105 1555 1555 1.33 LINK C VAL B 128 N MSE B 129 1555 1555 1.32 LINK C MSE B 129 N GLU B 130 1555 1555 1.33 LINK C ARG B 146 N MSE B 147 1555 1555 1.33 LINK C MSE B 147 N LYS B 148 1555 1555 1.33 LINK C ASP B 186 N MSE B 187 1555 1555 1.33 LINK C MSE B 187 N ASN B 188 1555 1555 1.32 LINK C TYR B 272 N MSE B 273 1555 1555 1.33 LINK C MSE B 273 N SER B 274 1555 1555 1.33 LINK C ILE B 298 N MSE B 299 1555 1555 1.32 LINK C MSE B 299 N LYS B 300 1555 1555 1.33 LINK C TRP B 303 N MSE B 304 1555 1555 1.33 LINK C MSE B 304 N ASN B 305 1555 1555 1.34 LINK C LEU B 331 N MSE B 332 1555 1555 1.33 LINK C MSE B 332 N VAL B 333 1555 1555 1.33 LINK C SER B 334 N MSE B 335 1555 1555 1.34 LINK C MSE B 335 N GLY B 336 1555 1555 1.33 LINK C VAL B 354 N MSE B 355 1555 1555 1.33 LINK C MSE B 355 N ALA B 356 1555 1555 1.32
CRYST1 118.822 118.822 105.380 90.00 90.00 120.00 P 61 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008416 0.004859 0.000000 0.00000
SCALE2 0.000000 0.009718 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009489 0.00000