10 20 30 40 50 60 70 80 1Y6U - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA BINDING PROTEIN 07-DEC-04 1Y6U
TITLE THE STRUCTURE OF THE EXCISIONASE (XIS) PROTEIN FROM TITLE 2 CONJUGATIVE TRANSPOSON TN916 PROVIDES INSIGHTS INTO THE TITLE 3 REGULATION OF HETEROBIVALENT TYROSINE RECOMBINASES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXCISIONASE FROM TRANSPOSON TN916; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: XIS; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 1351; SOURCE 4 GENE: XIS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: RJ3386 (BL21-DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTYB12
KEYWDS NMR STRUCTURE, DNA ARCHITECTURAL PROTEIN, TYROSINE KEYWDS 2 RECOMBINASE, EXCISIONASE, WINGED-HELIX PROTEIN, CONJUGATIVE KEYWDS 3 TRANSPOSON, DNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR M.ABBANI,M.IWAHARA,R.T.CLUBB
REVDAT 2 24-FEB-09 1Y6U 1 VERSN REVDAT 1 15-MAR-05 1Y6U 0
JRNL AUTH M.ABBANI,M.IWAHARA,R.T.CLUBB JRNL TITL THE STRUCTURE OF THE EXCISIONASE (XIS) PROTEIN JRNL TITL 2 FROM CONJUGATIVE TRANSPOSON TN916 PROVIDES JRNL TITL 3 INSIGHTS INTO THE REGULATION OF HETEROBIVALENT JRNL TITL 4 TYROSINE RECOMBINASES JRNL REF J.MOL.BIOL. V. 347 11 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15733914 JRNL DOI 10.1016/J.JMB.2005.01.019
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH REMARK 3 AUTHORS : C.D.SCHWIETERS,J.J.KUSZEWSKI,N.TJANDRA,G.M.CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1Y6U COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-DEC-04. REMARK 100 THE RCSB ID CODE IS RCSB031189.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 60 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM 15N/13C LABELED XIS, 30 REMARK 210 MM NAOAC, 60 MM NACL, 93% H2O, REMARK 210 7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY, 4D_13C/ REMARK 210 15N-SEPARATED_NOESY, HNCA-J, REMARK 210 HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, X-PLOR 3.1, REMARK 210 NMRPIPE SGI6X, PIPP 4.3.5 REMARK 210 METHOD USED : HYBRID DISTANCE GEOMETRY AND REMARK 210 SIMULATED ANNEALING REMARK 210 CALCULATIONS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 ALA A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 GLN A 3 REMARK 465 THR A 4 REMARK 465 ASP A 5 REMARK 465 ASP A 65 REMARK 465 ALA A 66 REMARK 465 ILE A 67
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 24 85.73 -42.75 REMARK 500 1 ASN A 37 60.22 -103.13 REMARK 500 1 ASN A 48 -29.07 -151.76 REMARK 500 1 GLU A 58 -30.23 -39.89 REMARK 500 1 ILE A 60 30.72 -95.94 REMARK 500 2 ARG A 24 86.03 -42.55 REMARK 500 2 ASN A 37 50.65 -99.54 REMARK 500 2 ASN A 48 -31.88 -152.08 REMARK 500 3 PRO A 7 109.84 -46.81 REMARK 500 3 ILE A 8 -41.31 -29.02 REMARK 500 3 ARG A 24 83.06 -45.88 REMARK 500 3 ASN A 37 64.96 -100.77 REMARK 500 3 ASN A 48 -14.92 -149.97 REMARK 500 3 ILE A 60 33.39 -96.36 REMARK 500 4 ARG A 24 87.67 -42.19 REMARK 500 4 LYS A 38 -19.28 -46.28 REMARK 500 4 ASN A 46 76.74 -153.32 REMARK 500 5 ILE A 8 -25.00 -36.00 REMARK 500 5 ARG A 24 86.02 -45.62 REMARK 500 5 ASN A 46 75.35 -150.18 REMARK 500 5 GLU A 58 -31.54 -39.32 REMARK 500 6 ARG A 24 78.69 -52.63 REMARK 500 6 ASN A 37 48.38 -99.49 REMARK 500 6 ASN A 48 11.12 -149.99 REMARK 500 6 LYS A 55 -66.00 -92.09 REMARK 500 7 ILE A 8 -22.88 -37.58 REMARK 500 7 ARG A 24 83.01 -53.01 REMARK 500 7 ASN A 37 61.34 -115.94 REMARK 500 7 LYS A 38 -16.27 -45.86 REMARK 500 7 ASN A 46 77.91 -106.47 REMARK 500 7 ASN A 48 -13.81 -149.96 REMARK 500 7 GLN A 56 -70.93 -54.81 REMARK 500 8 ARG A 24 87.28 -48.75 REMARK 500 8 ASN A 48 9.79 -150.87 REMARK 500 8 LYS A 55 -65.66 -91.86 REMARK 500 9 ARG A 24 86.75 -40.05 REMARK 500 9 ASN A 37 50.37 -98.39 REMARK 500 9 ASN A 46 75.48 -110.86 REMARK 500 9 ASN A 48 12.67 -149.50 REMARK 500 10 ILE A 8 -12.68 -48.40 REMARK 500 10 ARG A 24 86.81 -41.62 REMARK 500 10 ASN A 48 -8.97 -148.87 REMARK 500 11 ILE A 8 -39.46 -37.60 REMARK 500 11 ARG A 24 85.84 -41.28 REMARK 500 11 GLU A 35 -15.11 -47.71 REMARK 500 11 LYS A 38 -14.70 -48.02 REMARK 500 11 ASN A 48 -24.73 -150.19 REMARK 500 12 ILE A 8 -30.58 -37.86 REMARK 500 12 ARG A 24 87.75 -49.77 REMARK 500 12 ASN A 37 66.31 -103.88 REMARK 500 12 LYS A 38 -19.49 -46.48 REMARK 500 12 ASN A 48 -4.73 -149.07 REMARK 500 12 LYS A 55 -66.28 -93.47 REMARK 500 12 PHE A 57 -60.88 -95.27 REMARK 500 12 ILE A 60 33.12 -97.55 REMARK 500 13 ARG A 24 86.73 -42.65 REMARK 500 13 LYS A 38 -16.38 -47.75 REMARK 500 13 ASN A 48 10.63 -150.81 REMARK 500 13 GLN A 56 -73.99 -55.49 REMARK 500 14 ARG A 24 81.79 -52.27 REMARK 500 14 ASN A 37 44.77 -97.68 REMARK 500 14 LYS A 38 -14.33 -46.45 REMARK 500 14 ASN A 48 -2.24 -147.42 REMARK 500 14 GLU A 58 -32.66 -37.89 REMARK 500 15 GLU A 10 70.75 -113.38 REMARK 500 15 ARG A 24 83.52 -44.18 REMARK 500 15 LYS A 38 -13.80 -47.33 REMARK 500 15 ILE A 60 33.68 -98.77 REMARK 500 16 THR A 15 -166.04 -79.95 REMARK 500 16 ARG A 24 87.58 -41.26 REMARK 500 16 ASN A 37 60.89 -106.14 REMARK 500 16 LYS A 38 -18.17 -45.30 REMARK 500 16 ASN A 48 -9.68 -148.11 REMARK 500 17 ARG A 24 87.25 -42.71 REMARK 500 17 LYS A 38 -16.78 -46.77 REMARK 500 17 GLN A 56 -72.27 -58.32 REMARK 500 17 ILE A 60 34.54 -94.97 REMARK 500 18 THR A 15 -165.55 -79.14 REMARK 500 18 ARG A 24 86.44 -41.26 REMARK 500 18 ASN A 37 62.54 -102.87 REMARK 500 18 LYS A 38 -16.56 -46.46 REMARK 500 19 GLU A 10 63.66 -104.58 REMARK 500 19 ARG A 24 82.09 -51.57 REMARK 500 19 GLU A 35 -18.78 -44.60 REMARK 500 19 ASN A 37 61.36 -106.29 REMARK 500 19 ASN A 48 -25.79 -152.67 REMARK 500 19 ILE A 60 33.33 -93.34 REMARK 500 20 ARG A 24 88.64 -43.77 REMARK 500 20 GLU A 35 -15.70 -48.13 REMARK 500 20 LYS A 38 -15.67 -46.64 REMARK 500 20 ASN A 46 75.46 -105.94 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1Y6U A 1 67 UNP Q79DA1 Q79DA1_ENTFA 1 67
SEQADV 1Y6U ALA A -2 UNP Q79DA1 CLONING ARTIFACT SEQADV 1Y6U GLY A -1 UNP Q79DA1 CLONING ARTIFACT SEQADV 1Y6U HIS A 0 UNP Q79DA1 CLONING ARTIFACT
SEQRES 1 A 70 ALA GLY HIS MET LYS GLN THR ASP ILE PRO ILE TRP GLU SEQRES 2 A 70 ARG TYR THR LEU THR ILE GLU GLU ALA SER LYS TYR PHE SEQRES 3 A 70 ARG ILE GLY GLU ASN LYS LEU ARG ARG LEU ALA GLU GLU SEQRES 4 A 70 ASN LYS ASN ALA ASN TRP LEU ILE MET ASN GLY ASN ARG SEQRES 5 A 70 ILE GLN ILE LYS ARG LYS GLN PHE GLU LYS ILE ILE ASP SEQRES 6 A 70 THR LEU ASP ALA ILE
HELIX 1 1 ILE A 16 PHE A 23 1 8 HELIX 2 2 GLY A 26 ASN A 37 1 12 HELIX 3 3 ARG A 54 ILE A 60 1 7
SHEET 1 A 3 THR A 13 THR A 15 0 SHEET 2 A 3 ARG A 49 LYS A 53 -1 O ILE A 52 N LEU A 14 SHEET 3 A 3 LEU A 43 ASN A 46 -1 N ASN A 46 O ARG A 49
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000