10 20 30 40 50 60 70 80 1Y58 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSPORT PROTEIN 02-DEC-04 1Y58
TITLE THE STRUCTURE OF A LACTOFERRICINB DERIVATIVE BOUND TO TITLE 2 MICELLES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTOTRANSFERRIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 4-14; COMPND 5 SYNONYM: LACTOFERRIN, LACTOFERRICIN B, LFCIN B; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE IS DERIVED FROM RESIDUES 4-14 SOURCE 4 OF LACTOFERRICINB (BOVINE).
KEYWDS MICELLE-BOUND, DISULFIDE-LINKED, PEPTIDE, AMIDATED C- KEYWDS 2 TERMINUS, TRANSPORT PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR L.T.NGUYEN,D.J.SCHIBLI,H.J.VOGEL
REVDAT 3 24-FEB-09 1Y58 1 VERSN REVDAT 2 20-DEC-05 1Y58 1 JRNL REVDAT 1 22-MAR-05 1Y58 0
JRNL AUTH L.T.NGUYEN,D.J.SCHIBLI,H.J.VOGEL JRNL TITL STRUCTURAL STUDIES AND MODEL MEMBRANE INTERACTIONS JRNL TITL 2 OF TWO PEPTIDES DERIVED FROM BOVINE LACTOFERRICIN JRNL REF J.PEPT.SCI. V. 11 379 2005 JRNL REFN ISSN 1075-2617 JRNL PMID 15635665 JRNL DOI 10.1002/PSC.629
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1Y58 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-04. REMARK 100 THE RCSB ID CODE IS RCSB031131.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 4.2 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM LFCINB4-14DISU WITH 120MM REMARK 210 SDS, 90% H20, 10% D20 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 2 -61.11 -165.49 REMARK 500 1 ARG A 3 30.02 -175.29 REMARK 500 1 TRP A 4 -55.31 -175.10 REMARK 500 1 GLN A 5 47.20 -86.41 REMARK 500 2 ARG A 2 -62.71 -165.21 REMARK 500 2 ARG A 3 32.75 -175.03 REMARK 500 2 TRP A 4 -55.28 -174.62 REMARK 500 2 GLN A 5 46.64 -87.32 REMARK 500 3 ARG A 2 -59.00 -164.08 REMARK 500 3 ARG A 3 29.04 -175.37 REMARK 500 3 TRP A 4 -54.29 -175.08 REMARK 500 3 LYS A 9 62.09 -67.71 REMARK 500 4 ARG A 2 -65.80 -165.86 REMARK 500 4 ARG A 3 34.24 -175.02 REMARK 500 4 TRP A 4 -49.73 -174.84 REMARK 500 4 GLN A 5 45.63 -93.62 REMARK 500 5 ARG A 2 -63.81 -162.80 REMARK 500 5 ARG A 3 33.15 -175.35 REMARK 500 5 TRP A 4 -54.25 -173.72 REMARK 500 5 LYS A 9 66.80 -66.99 REMARK 500 6 ARG A 2 -62.23 -166.13 REMARK 500 6 ARG A 3 30.23 -175.39 REMARK 500 6 TRP A 4 -50.91 -173.49 REMARK 500 6 GLN A 5 39.26 -90.50 REMARK 500 7 ARG A 2 -60.92 -163.38 REMARK 500 7 ARG A 3 30.45 -175.44 REMARK 500 7 TRP A 4 -56.00 -175.19 REMARK 500 7 MET A 8 57.26 -93.03 REMARK 500 7 LYS A 9 67.62 -64.49 REMARK 500 8 ARG A 2 -62.72 -163.16 REMARK 500 8 ARG A 3 30.96 -175.66 REMARK 500 8 TRP A 4 -55.99 -175.27 REMARK 500 8 LYS A 9 63.63 -66.45 REMARK 500 9 ARG A 2 -65.08 -162.52 REMARK 500 9 ARG A 3 31.31 -175.64 REMARK 500 9 TRP A 4 -54.09 -174.48 REMARK 500 9 MET A 8 58.53 -91.76 REMARK 500 9 LYS A 9 60.40 -67.49 REMARK 500 10 ARG A 2 -62.46 -163.66 REMARK 500 10 ARG A 3 31.48 -174.98 REMARK 500 10 TRP A 4 -54.40 -174.68 REMARK 500 10 GLN A 5 49.17 -87.10 REMARK 500 10 LYS A 9 61.30 -68.95 REMARK 500 11 ARG A 2 -62.67 -164.48 REMARK 500 11 ARG A 3 30.69 -175.07 REMARK 500 11 TRP A 4 -54.38 -172.96 REMARK 500 11 GLN A 5 48.04 -87.74 REMARK 500 11 LYS A 9 62.53 -67.95 REMARK 500 12 ARG A 2 -62.28 -163.65 REMARK 500 12 ARG A 3 31.71 -174.74 REMARK 500 12 TRP A 4 -52.79 -175.21 REMARK 500 12 LYS A 9 66.98 -65.70 REMARK 500 13 ARG A 2 -57.76 -166.08 REMARK 500 13 ARG A 3 28.21 -175.46 REMARK 500 13 TRP A 4 -56.64 -175.18 REMARK 500 13 GLN A 5 49.35 -84.43 REMARK 500 14 ARG A 2 -59.94 -163.46 REMARK 500 14 ARG A 3 29.25 -175.56 REMARK 500 14 TRP A 4 -55.40 -174.77 REMARK 500 14 MET A 8 59.48 -91.31 REMARK 500 14 LYS A 9 62.56 -68.29 REMARK 500 15 ARG A 2 -61.68 -165.63 REMARK 500 15 ARG A 3 29.55 -175.55 REMARK 500 15 TRP A 4 -51.76 -175.22 REMARK 500 15 GLN A 5 45.85 -88.94 REMARK 500 15 LYS A 9 54.34 -69.22 REMARK 500 16 ARG A 2 -62.09 -165.20 REMARK 500 16 ARG A 3 29.53 -175.41 REMARK 500 16 TRP A 4 -50.34 -171.87 REMARK 500 16 GLN A 5 43.85 -92.64 REMARK 500 16 LYS A 9 49.13 -70.77 REMARK 500 17 ARG A 2 -57.00 -139.40 REMARK 500 17 ARG A 3 29.31 -173.91 REMARK 500 17 TRP A 4 -57.16 -175.25 REMARK 500 18 ARG A 2 -64.74 -165.77 REMARK 500 18 ARG A 3 32.88 -175.09 REMARK 500 18 TRP A 4 -50.26 -174.31 REMARK 500 18 GLN A 5 44.02 -93.07 REMARK 500 19 ARG A 2 -66.27 -162.89 REMARK 500 19 ARG A 3 33.22 -175.11 REMARK 500 19 TRP A 4 -50.88 -174.06 REMARK 500 19 GLN A 5 55.24 -91.66 REMARK 500 19 MET A 8 59.10 -92.71 REMARK 500 19 LYS A 9 66.35 -67.13 REMARK 500 20 ARG A 2 -67.43 -161.75 REMARK 500 20 ARG A 3 31.68 -174.99 REMARK 500 20 TRP A 4 -51.68 -172.65 REMARK 500 20 GLN A 5 54.98 -90.21 REMARK 500 20 MET A 8 58.36 -92.98 REMARK 500 20 LYS A 9 66.08 -66.59 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 A 14
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LFC RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE FULL LACTOFERRICINB PEPTIDE REMARK 900 RELATED ID: 1Y5C RELATED DB: PDB REMARK 900 THE STRUCTURE OF A LACTOFERRICINB DERIVATIVE BOUND TO REMARK 900 MICELLES
DBREF 1Y58 A 1 14 PDB 1Y58 1Y58 1 14
SEQRES 1 A 14 CYS ARG ARG TRP GLN TRP ARG MET LYS LYS LEU GLY CYS SEQRES 2 A 14 NH2
HET NH2 A 14 3
HETNAM NH2 AMINO GROUP
FORMUL 1 NH2 H2 N
SSBOND 1 CYS A 1 CYS A 13 1555 1555 2.03
LINK C CYS A 13 N NH2 A 14 1555 1555 1.33 LINK O CYS A 13 N NH2 A 14 1555 1555 1.40
SITE 1 AC1 1 CYS A 13
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000