10 20 30 40 50 60 70 80 1Y1M - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LIGAND BINDING PROTEIN 18-NOV-04 1Y1M
TITLE CRYSTAL STRUCTURE OF THE NR1 LIGAND BINDING CORE IN COMPLEX TITLE 2 WITH CYCLOLEUCINE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE [NMDA] RECEPTOR SUBUNIT ZETA 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND-BINDING CORE; COMPND 5 SYNONYM: NMDAR NR1; NR1; NMD-R1; N-METHYL-D-ASPARTATE COMPND 6 RECEPTOR; GLUTAMATE RECEPTOR, IONOTROPIC, N-METHYL D- COMPND 7 ASPARTATE 1; COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 ORGAN: FOREBRAIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI B; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B(+); SOURCE 11 OTHER_DETAILS: THE FIRST GLY IS A CLONING ARTIFACT. TWO SOURCE 12 REGIONS (RESIDUES 394:544 AND 631:800) OF NMZ1_RAT WERE SOURCE 13 CONNECTED WITH DIPEPTIDE OF GLY AND THR
KEYWDS PROTEIN-LIGAND COMPLEX; LIGAND-BINDING COMPLEX, LIGAND KEYWDS 2 BINDING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR A.INANOBE,E.GOUAUX
REVDAT 2 24-FEB-09 1Y1M 1 VERSN REVDAT 1 12-JUL-05 1Y1M 0
JRNL AUTH A.INANOBE,H.FURUKAWA,E.GOUAUX JRNL TITL MECHANISM OF PARTIAL AGONIST ACTION AT THE NR1 JRNL TITL 2 SUBUNIT OF NMDA RECEPTORS. JRNL REF NEURON V. 47 71 2005 JRNL REFN ISSN 0896-6273 JRNL PMID 15996549 JRNL DOI 10.1016/J.NEURON.2005.05.022
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 57310 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.700 REMARK 3 FREE R VALUE TEST SET COUNT : 5772 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4203 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 685 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17660 REMARK 3 B22 (A**2) : 0.14480 REMARK 3 B33 (A**2) : 1.87250 REMARK 3 B12 (A**2) : -0.06110 REMARK 3 B13 (A**2) : -0.41190 REMARK 3 B23 (A**2) : 0.32020 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.18 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1Y1M COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-NOV-04. REMARK 100 THE RCSB ID CODE IS RCSB031001.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : KOHZU DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59649 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 46.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 3.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.25000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 MET A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 ASN A 48 REMARK 465 ASP A 49 REMARK 465 THR A 50 REMARK 465 SER A 51 REMARK 465 PRO A 52 REMARK 465 GLY A 53 REMARK 465 SER A 54 REMARK 465 PRO A 55 REMARK 465 ARG A 56 REMARK 465 HIS A 57 REMARK 465 ARG A 286 REMARK 465 TYR A 287 REMARK 465 GLN A 288 REMARK 465 GLU A 289 REMARK 465 CYS A 290 REMARK 465 ASP A 291 REMARK 465 SER A 292 REMARK 465 GLY B 1 REMARK 465 MET B 2 REMARK 465 SER B 3 REMARK 465 THR B 4 REMARK 465 ASN B 48 REMARK 465 ASP B 49 REMARK 465 THR B 50 REMARK 465 SER B 51 REMARK 465 PRO B 52 REMARK 465 GLY B 53 REMARK 465 SER B 54 REMARK 465 PRO B 55 REMARK 465 ARG B 56 REMARK 465 HIS B 57 REMARK 465 ARG B 97 REMARK 465 VAL B 98 REMARK 465 ASN B 99 REMARK 465 ASN B 100 REMARK 465 SER B 101 REMARK 465 ASN B 102 REMARK 465 LYS B 103 REMARK 465 ARG B 286 REMARK 465 TYR B 287 REMARK 465 GLN B 288 REMARK 465 GLU B 289 REMARK 465 CYS B 290 REMARK 465 ASP B 291 REMARK 465 SER B 292
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 102 CG OD1 ND2 REMARK 470 LYS A 151 CG CD CE NZ REMARK 470 ARG A 155 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 177 CG CD CE NZ REMARK 470 GLN A 178 CG CD OE1 NE2 REMARK 470 ARG A 186 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 190 CG CD OE1 OE2 REMARK 470 ARG A 196 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 199 CG CD OE1 OE2 REMARK 470 LYS A 200 CG CD CE NZ REMARK 470 GLU A 278 CG CD OE1 OE2 REMARK 470 ARG B 155 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 169 CG OD1 OD2 REMARK 470 GLN B 178 CG CD OE1 NE2 REMARK 470 ARG B 186 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 189 CG1 CG2 REMARK 470 GLU B 190 CG CD OE1 OE2 REMARK 470 ARG B 196 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 243 CG CD OE1 OE2 REMARK 470 GLU B 278 CG CD OE1 OE2 REMARK 470 LYS B 282 CG CD CE NZ
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 13 88.18 -168.99 REMARK 500 ASN A 107 -167.27 -111.73 REMARK 500 GLN A 144 -154.03 -155.27 REMARK 500 GLN B 13 92.80 -161.53 REMARK 500 ASN B 107 -167.03 -108.69 REMARK 500 GLN B 144 -154.54 -153.54 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AC5 A 1001 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AC5 B 1002
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PB7 RELATED DB: PDB REMARK 900 RELATED ID: 1PB8 RELATED DB: PDB REMARK 900 RELATED ID: 1PB9 RELATED DB: PDB REMARK 900 RELATED ID: 1PBQ RELATED DB: PDB REMARK 900 RELATED ID: 1Y1Z RELATED DB: PDB REMARK 900 RELATED ID: 1Y20 RELATED DB: PDB
DBREF 1Y1M A 2 152 UNP P35439 NMDZ1_RAT 394 544 DBREF 1Y1M A 155 292 UNP P35439 NMZ1_RAT 663 800 DBREF 1Y1M B 2 152 UNP P35439 NMDZ1_RAT 394 544 DBREF 1Y1M B 155 292 UNP P35439 NMZ1_RAT 663 800
SEQADV 1Y1M GLY A 1 UNP P35439 INSERTION SEQADV 1Y1M GLY A 153 UNP P35439 INSERTION SEQADV 1Y1M THR A 154 UNP P35439 INSERTION SEQADV 1Y1M GLY B 1 UNP P35439 INSERTION SEQADV 1Y1M GLY B 153 UNP P35439 INSERTION SEQADV 1Y1M THR B 154 UNP P35439 INSERTION
SEQRES 1 A 292 GLY MET SER THR ARG LEU LYS ILE VAL THR ILE HIS GLN SEQRES 2 A 292 GLU PRO PHE VAL TYR VAL LYS PRO THR MET SER ASP GLY SEQRES 3 A 292 THR CYS LYS GLU GLU PHE THR VAL ASN GLY ASP PRO VAL SEQRES 4 A 292 LYS LYS VAL ILE CYS THR GLY PRO ASN ASP THR SER PRO SEQRES 5 A 292 GLY SER PRO ARG HIS THR VAL PRO GLN CYS CYS TYR GLY SEQRES 6 A 292 PHE CYS ILE ASP LEU LEU ILE LYS LEU ALA ARG THR MET SEQRES 7 A 292 ASN PHE THR TYR GLU VAL HIS LEU VAL ALA ASP GLY LYS SEQRES 8 A 292 PHE GLY THR GLN GLU ARG VAL ASN ASN SER ASN LYS LYS SEQRES 9 A 292 GLU TRP ASN GLY MET MET GLY GLU LEU LEU SER GLY GLN SEQRES 10 A 292 ALA ASP MET ILE VAL ALA PRO LEU THR ILE ASN ASN GLU SEQRES 11 A 292 ARG ALA GLN TYR ILE GLU PHE SER LYS PRO PHE LYS TYR SEQRES 12 A 292 GLN GLY LEU THR ILE LEU VAL LYS LYS GLY THR ARG ILE SEQRES 13 A 292 THR GLY ILE ASN ASP PRO ARG LEU ARG ASN PRO SER ASP SEQRES 14 A 292 LYS PHE ILE TYR ALA THR VAL LYS GLN SER SER VAL ASP SEQRES 15 A 292 ILE TYR PHE ARG ARG GLN VAL GLU LEU SER THR MET TYR SEQRES 16 A 292 ARG HIS MET GLU LYS HIS ASN TYR GLU SER ALA ALA GLU SEQRES 17 A 292 ALA ILE GLN ALA VAL ARG ASP ASN LYS LEU HIS ALA PHE SEQRES 18 A 292 ILE TRP ASP SER ALA VAL LEU GLU PHE GLU ALA SER GLN SEQRES 19 A 292 LYS CYS ASP LEU VAL THR THR GLY GLU LEU PHE PHE ARG SEQRES 20 A 292 SER GLY PHE GLY ILE GLY MET ARG LYS ASP SER PRO TRP SEQRES 21 A 292 LYS GLN ASN VAL SER LEU SER ILE LEU LYS SER HIS GLU SEQRES 22 A 292 ASN GLY PHE MET GLU ASP LEU ASP LYS THR TRP VAL ARG SEQRES 23 A 292 TYR GLN GLU CYS ASP SER SEQRES 1 B 292 GLY MET SER THR ARG LEU LYS ILE VAL THR ILE HIS GLN SEQRES 2 B 292 GLU PRO PHE VAL TYR VAL LYS PRO THR MET SER ASP GLY SEQRES 3 B 292 THR CYS LYS GLU GLU PHE THR VAL ASN GLY ASP PRO VAL SEQRES 4 B 292 LYS LYS VAL ILE CYS THR GLY PRO ASN ASP THR SER PRO SEQRES 5 B 292 GLY SER PRO ARG HIS THR VAL PRO GLN CYS CYS TYR GLY SEQRES 6 B 292 PHE CYS ILE ASP LEU LEU ILE LYS LEU ALA ARG THR MET SEQRES 7 B 292 ASN PHE THR TYR GLU VAL HIS LEU VAL ALA ASP GLY LYS SEQRES 8 B 292 PHE GLY THR GLN GLU ARG VAL ASN ASN SER ASN LYS LYS SEQRES 9 B 292 GLU TRP ASN GLY MET MET GLY GLU LEU LEU SER GLY GLN SEQRES 10 B 292 ALA ASP MET ILE VAL ALA PRO LEU THR ILE ASN ASN GLU SEQRES 11 B 292 ARG ALA GLN TYR ILE GLU PHE SER LYS PRO PHE LYS TYR SEQRES 12 B 292 GLN GLY LEU THR ILE LEU VAL LYS LYS GLY THR ARG ILE SEQRES 13 B 292 THR GLY ILE ASN ASP PRO ARG LEU ARG ASN PRO SER ASP SEQRES 14 B 292 LYS PHE ILE TYR ALA THR VAL LYS GLN SER SER VAL ASP SEQRES 15 B 292 ILE TYR PHE ARG ARG GLN VAL GLU LEU SER THR MET TYR SEQRES 16 B 292 ARG HIS MET GLU LYS HIS ASN TYR GLU SER ALA ALA GLU SEQRES 17 B 292 ALA ILE GLN ALA VAL ARG ASP ASN LYS LEU HIS ALA PHE SEQRES 18 B 292 ILE TRP ASP SER ALA VAL LEU GLU PHE GLU ALA SER GLN SEQRES 19 B 292 LYS CYS ASP LEU VAL THR THR GLY GLU LEU PHE PHE ARG SEQRES 20 B 292 SER GLY PHE GLY ILE GLY MET ARG LYS ASP SER PRO TRP SEQRES 21 B 292 LYS GLN ASN VAL SER LEU SER ILE LEU LYS SER HIS GLU SEQRES 22 B 292 ASN GLY PHE MET GLU ASP LEU ASP LYS THR TRP VAL ARG SEQRES 23 B 292 TYR GLN GLU CYS ASP SER
HET AC5 A1001 9 HET AC5 B1002 9
HETNAM AC5 1-AMINOCYCLOPENTANECARBOXYLIC ACID
HETSYN AC5 CYCLO-LEUCINE
FORMUL 3 AC5 2(C6 H11 N O2) FORMUL 5 HOH *679(H2 O)
HELIX 1 1 GLY A 65 MET A 78 1 14 HELIX 2 2 ASN A 107 SER A 115 1 9 HELIX 3 3 ASN A 128 GLN A 133 1 6 HELIX 4 4 ASP A 161 ASN A 166 1 6 HELIX 5 5 SER A 179 GLN A 188 1 10 HELIX 6 6 LEU A 191 GLU A 199 1 9 HELIX 7 7 SER A 205 ASP A 215 1 11 HELIX 8 8 SER A 225 LYS A 235 1 11 HELIX 9 9 TRP A 260 ASN A 274 1 15 HELIX 10 10 GLY A 275 VAL A 285 1 11 HELIX 11 11 GLY B 65 MET B 78 1 14 HELIX 12 12 ASN B 107 SER B 115 1 9 HELIX 13 13 ASN B 128 GLN B 133 1 6 HELIX 14 14 ASP B 161 ASN B 166 1 6 HELIX 15 15 SER B 179 GLN B 188 1 10 HELIX 16 16 LEU B 191 GLU B 199 1 9 HELIX 17 17 SER B 205 ASP B 215 1 11 HELIX 18 18 SER B 225 LYS B 235 1 11 HELIX 19 19 TRP B 260 ASN B 274 1 15 HELIX 20 20 GLY B 275 VAL B 285 1 11
SHEET 1 A 6 TYR A 18 PRO A 21 0 SHEET 2 A 6 VAL A 59 TYR A 64 -1 O CYS A 62 N LYS A 20 SHEET 3 A 6 VAL A 42 GLY A 46 -1 N CYS A 44 O GLN A 61 SHEET 4 A 6 TYR A 82 LEU A 86 1 O LEU A 86 N THR A 45 SHEET 5 A 6 LEU A 6 THR A 10 1 N ILE A 8 O GLU A 83 SHEET 6 A 6 MET A 120 ILE A 121 1 O MET A 120 N VAL A 9 SHEET 1 B 2 GLN A 95 GLU A 96 0 SHEET 2 B 2 GLU A 105 TRP A 106 -1 O GLU A 105 N GLU A 96 SHEET 1 C 2 GLU A 136 PHE A 137 0 SHEET 2 C 2 GLY A 253 MET A 254 -1 O MET A 254 N GLU A 136 SHEET 1 D 4 TYR A 173 ALA A 174 0 SHEET 2 D 4 ALA A 220 ASP A 224 1 O ILE A 222 N ALA A 174 SHEET 3 D 4 LYS A 142 LYS A 151 -1 N THR A 147 O TRP A 223 SHEET 4 D 4 LEU A 238 PHE A 250 -1 O SER A 248 N GLN A 144 SHEET 1 E 8 TYR B 18 PRO B 21 0 SHEET 2 E 8 VAL B 59 TYR B 64 -1 O CYS B 62 N LYS B 20 SHEET 3 E 8 VAL B 42 GLY B 46 -1 N VAL B 42 O CYS B 63 SHEET 4 E 8 TYR B 82 LEU B 86 1 O LEU B 86 N THR B 45 SHEET 5 E 8 LEU B 6 THR B 10 1 N ILE B 8 O GLU B 83 SHEET 6 E 8 MET B 120 ILE B 121 1 O MET B 120 N VAL B 9 SHEET 7 E 8 GLY B 253 MET B 254 -1 O GLY B 253 N ILE B 121 SHEET 8 E 8 GLU B 136 PHE B 137 -1 N GLU B 136 O MET B 254 SHEET 1 F 4 TYR B 173 ALA B 174 0 SHEET 2 F 4 ALA B 220 ASP B 224 1 O ILE B 222 N ALA B 174 SHEET 3 F 4 LYS B 142 LYS B 151 -1 N THR B 147 O TRP B 223 SHEET 4 F 4 LEU B 238 PHE B 250 -1 O SER B 248 N GLN B 144
SSBOND 1 CYS A 28 CYS A 62 1555 1555 2.04 SSBOND 2 CYS A 44 CYS A 63 1555 1555 2.04 SSBOND 3 CYS B 28 CYS B 62 1555 1555 2.04 SSBOND 4 CYS B 44 CYS B 63 1555 1555 2.04
CISPEP 1 GLU A 14 PRO A 15 0 0.08 CISPEP 2 GLU B 14 PRO B 15 0 0.10
SITE 1 AC1 10 PHE A 92 PRO A 124 LEU A 125 THR A 126 SITE 2 AC1 10 ARG A 131 SER A 180 TRP A 223 ASP A 224 SITE 3 AC1 10 PHE A 250 HOH A1018 SITE 1 AC2 10 PHE B 92 PRO B 124 LEU B 125 THR B 126 SITE 2 AC2 10 ARG B 131 SER B 180 TRP B 223 ASP B 224 SITE 3 AC2 10 PHE B 250 HOH B1011
CRYST1 53.156 53.203 67.546 110.12 91.55 108.69 P 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.018813 0.006364 0.003102 0.00000
SCALE2 0.000000 0.019842 0.007963 0.00000
SCALE3 0.000000 0.000000 0.015958 0.00000