10 20 30 40 50 60 70 80 1XV7 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL TRANSPORT 27-OCT-04 1XV7
TITLE SOLUTION STRUCTURE OF ANTIMICROBIAL AND ENDOTOXIN- TITLE 2 NEUTRALIZING PEPTIDE LF11 IN DPC MICELLES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTOFERRIN-BASED SYNTHETIC PEPTIDE FQWQRNIRKVR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE IS MODIFIED ELEVEN-RESIDUE SOURCE 4 HUMAN LACTOFERRIN (RESIDUES 20-30) BASED PEPTIDE.
KEYWDS LOOP, HYDROPHOBIC CORE, METAL TRANSPORT
EXPDTA SOLUTION NMR
NUMMDL 7
AUTHOR B.JAPELJ,P.PRISTOVSEK,A.MAJERLE,R.JERALA
REVDAT 3 24-FEB-09 1XV7 1 VERSN REVDAT 2 03-MAY-05 1XV7 1 JRNL REVDAT 1 22-MAR-05 1XV7 0
JRNL AUTH B.JAPELJ,P.PRISTOVSEK,A.MAJERLE,R.JERALA JRNL TITL STRUCTURAL ORIGIN OF ENDOTOXIN NEUTRALIZATION AND JRNL TITL 2 ANTIMICROBIAL ACTIVITY OF A LACTOFERRIN-BASED JRNL TITL 3 PEPTIDE JRNL REF J.BIOL.CHEM. V. 280 16955 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15687491 JRNL DOI 10.1074/JBC.M500266200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5 REMARK 3 AUTHORS : GUNTERT,P., BRAUN,W., WUTHRICH,K. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1XV7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-OCT-04. REMARK 100 THE RCSB ID CODE IS RCSB030801.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM LF11; 240MM DPC-D38, 20MM REMARK 210 SODIUM PHOSPHATE BUFFER (PH REMARK 210 5.5), 92% H20, 8% D20 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA 1.5 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 7 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 7 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 5 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 1 ARG A 8 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 1 ARG A 11 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 2 ARG A 5 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 2 ARG A 8 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 2 ARG A 11 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 3 ARG A 5 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 3 ARG A 8 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 3 ARG A 11 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 4 ARG A 5 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 4 ARG A 8 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 4 ARG A 11 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 5 ARG A 5 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 5 ARG A 8 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 5 ARG A 11 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 6 ARG A 5 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 6 ARG A 8 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 6 ARG A 11 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 7 ARG A 5 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 7 ARG A 8 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 7 ARG A 11 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 6 93.69 60.74 REMARK 500 1 VAL A 10 -57.25 -166.14 REMARK 500 2 GLN A 2 44.21 -85.47 REMARK 500 2 GLN A 4 -60.95 -159.82 REMARK 500 2 ARG A 5 17.70 54.77 REMARK 500 2 ILE A 7 -87.94 -82.88 REMARK 500 2 ARG A 8 68.45 -167.81 REMARK 500 3 GLN A 2 70.09 60.07 REMARK 500 3 ARG A 5 94.24 71.70 REMARK 500 3 ASN A 6 77.26 67.96 REMARK 500 3 ARG A 8 58.74 -98.44 REMARK 500 3 VAL A 10 99.97 74.67 REMARK 500 4 TRP A 3 -161.25 69.48 REMARK 500 4 ASN A 6 44.62 -103.31 REMARK 500 4 ARG A 8 60.50 -153.42 REMARK 500 5 ILE A 7 -75.99 -63.61 REMARK 500 6 GLN A 4 -74.21 -119.33 REMARK 500 6 ASN A 6 75.20 -162.19 REMARK 500 6 VAL A 10 -60.47 -156.74 REMARK 500 7 GLN A 2 78.16 -103.30 REMARK 500 7 ILE A 7 -70.58 -131.85 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 A 12
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XV4 RELATED DB: PDB REMARK 900 PEPTIDE LF11 IN SDS MICELLES
SEQRES 1 A 12 PHE GLN TRP GLN ARG ASN ILE ARG LYS VAL ARG NH2
HET NH2 A 12 3
HETNAM NH2 AMINO GROUP
FORMUL 1 NH2 H2 N
LINK C ARG A 11 N NH2 A 12 1555 1555 1.33
SITE 1 AC1 1 ARG A 11
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000