10 20 30 40 50 60 70 80 1XSL - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE/DNA 19-OCT-04 1XSL
TITLE CRYSTAL STRUCTURE OF HUMAN DNA POLYMERASE LAMBDA IN COMPLEX WITH A ONE TITLE 2 NUCLEOTIDE DNA GAP
COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*CP*GP*GP*CP*AP*GP*CP*GP*CP*AP*C)-3'; COMPND 3 CHAIN: B, F, J, N; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(*GP*TP*GP*CP*GP*C)-3'; COMPND 7 CHAIN: C, G, K, O; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: 5'-D(P*GP*CP*CP*G)-3'; COMPND 11 CHAIN: D, H, L, P; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: DNA POLYMERASE LAMBDA; COMPND 15 CHAIN: A, E, I, M; COMPND 16 FRAGMENT: 39 KDA CATALYTIC C-TERMINAL DOMAIN; COMPND 17 SYNONYM: POL LAMBDA, DNA POLYMERASE BETA-2, POL BETA2; COMPND 18 EC: 2.7.7.7; COMPND 19 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: TEMPLATE DNA; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: PRIMER DNA; SOURCE 7 MOL_ID: 3; SOURCE 8 SYNTHETIC: YES; SOURCE 9 OTHER_DETAILS: DOWNSTREAM PRIMER DNA; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: POLL; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PET-22B
KEYWDS DNA POLYMERASE LAMBDA, PROTEIN-DNA COMPLEX, HELIX-HAIRPIN-HELIX, KEYWDS 2 TRANSFERASE-DNA COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR M.GARCIA-DIAZ,K.BEBENEK,J.M.KRAHN,T.A.KUNKEL,L.C.PEDERSEN
REVDAT 3 13-JUL-11 1XSL 1 VERSN REVDAT 2 24-FEB-09 1XSL 1 VERSN REVDAT 1 18-JAN-05 1XSL 0
JRNL AUTH M.GARCIA-DIAZ,K.BEBENEK,J.M.KRAHN,T.A.KUNKEL,L.C.PEDERSEN JRNL TITL A CLOSED CONFORMATION FOR THE POL LAMBDA CATALYTIC CYCLE. JRNL REF NAT.STRUCT.MOL.BIOL. V. 12 97 2005 JRNL REFN ISSN 1545-9993 JRNL PMID 15608652 JRNL DOI 10.1038/NSMB876
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.GARCIA-DIAZ,K.BEBENEK,J.M.KRAHN,L.BLANCO,T.A.KUNKEL, REMARK 1 AUTH 2 L.C.PEDERSEN REMARK 1 TITL A STRUCTURAL SOLUTION FOR THE DNA POLYMERASE-LAMBDA REMARK 1 TITL 2 DEPENDENT REPAIR OF DNA GAPS WITH MINIMAL HOMOLOGY REMARK 1 REF MOL.CELL V. 13 561 2004 REMARK 1 REFN ISSN 1097-2765 REMARK 1 REFERENCE 2 REMARK 1 AUTH M GARCIA-DIAZ,K.BEBENEK,R.SABARIEGOS,O.DOMINGUEZ, REMARK 1 AUTH 2 J.RODRIGUEZ,T.KIRCHHOFF,E.GARCIA-PALOMERO,A.J.PICHER, REMARK 1 AUTH 3 R.JUAREZ,J.F.RUIZ,T.A.KUNKEL,L.BLANCO REMARK 1 TITL DNA POLYMERASE LAMBDA, A NOVEL DNA REPAIR ENZYME IN HUMAN REMARK 1 TITL 2 CELLS REMARK 1 REF J.BIOL.CHEM. V. 277 13184 2002 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 3 REMARK 1 AUTH K.BEBENEK,K.GARCIA-DIAZ,L.BLANCO,T.A.KUNKEL REMARK 1 TITL THE FRAMESHIFT INFIDELITY OF HUMAN DNA POLYMERASE LAMBDA. REMARK 1 TITL 2 IMPLICATIONS FOR FUNCTION. REMARK 1 REF J.BIOL.CHEM. V. 278 34685 2003 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 4 REMARK 1 AUTH M.GARCIA-DIAZ,K.BEBENEK,T.A.KUNKEL,L.BLANCO REMARK 1 TITL IDENTIFICATION OF AN INTRINSIC 5'-DEOXYRIBOSE-5-PHOSPHATE REMARK 1 TITL 2 LYASE ACTIVITY IN HUMAN DNA POLYMERASE LAMBDA: A POSSIBLE REMARK 1 TITL 3 ROLE IN BASE EXCISION REPAIR REMARK 1 REF J.BIOL.CHEM. V. 276 34659 2001 REMARK 1 REFN ISSN 0021-9258
REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 447347.110 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 82636 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4166 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 11524 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 553 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10181 REMARK 3 NUCLEIC ACID ATOMS : 1704 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 843 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.29000 REMARK 3 B22 (A**2) : -3.54000 REMARK 3 B33 (A**2) : 0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.28 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.37 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.94 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.260 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.040 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.840 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.390 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.31 REMARK 3 BSOL : 33.89 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : GCMPD1.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : GCMPD1.TOP REMARK 3 TOPOLOGY FILE 5 : ION.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1XSL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-NOV-04. REMARK 100 THE RCSB ID CODE IS RCSB030720.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88074 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, CACODYLATE, SODIUM CHLORIDE, PH REMARK 280 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 95.75200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.40600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 95.75200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.40600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE PROTEIN IS A MONOMER THUS THE ASYMMETRIC UNIT REMARK 300 REPRESENTS FOUR BIOLOGICAL UNITS
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, G, H, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: J, K, L, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: N, O, P, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH E1066 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 241 REMARK 465 ALA A 242 REMARK 465 GLN A 243 REMARK 465 PRO A 244 REMARK 465 SER A 245 REMARK 465 SER A 246 REMARK 465 GLN A 247 REMARK 465 LYS A 248 REMARK 465 MET E 241 REMARK 465 ALA E 242 REMARK 465 GLN E 243 REMARK 465 PRO E 244 REMARK 465 SER E 245 REMARK 465 SER E 246 REMARK 465 GLN E 247 REMARK 465 LYS E 248 REMARK 465 ALA E 249 REMARK 465 THR E 250 REMARK 465 MET I 241 REMARK 465 ALA I 242 REMARK 465 GLN I 243 REMARK 465 PRO I 244 REMARK 465 SER I 245 REMARK 465 SER I 246 REMARK 465 GLN I 247 REMARK 465 LYS I 248 REMARK 465 ALA I 249 REMARK 465 MET M 241 REMARK 465 ALA M 242 REMARK 465 GLN M 243 REMARK 465 PRO M 244 REMARK 465 SER M 245 REMARK 465 SER M 246 REMARK 465 GLN M 247 REMARK 465 LYS M 248
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 544 CG CD CE NZ REMARK 470 VAL A 545 CG1 CG2 REMARK 470 LEU E 254 CG CD1 CD2 REMARK 470 LYS E 265 CG CD CE NZ REMARK 470 GLU E 311 CG CD OE1 OE2 REMARK 470 ARG E 323 CG CD NE CZ NH1 NH2 REMARK 470 GLU E 330 CG CD OE1 OE2 REMARK 470 GLU E 361 CG CD OE1 OE2 REMARK 470 GLU E 390 CG CD OE1 OE2 REMARK 470 GLN E 453 CG CD OE1 NE2 REMARK 470 LYS E 544 CG CD CE NZ REMARK 470 VAL E 545 CG1 CG2 REMARK 470 THR I 250 OG1 CG2 REMARK 470 HIS I 255 CG ND1 CD2 CE1 NE2 REMARK 470 LYS I 273 CG CD CE NZ REMARK 470 HIS I 321 CG ND1 CD2 CE1 NE2 REMARK 470 ARG I 323 CG CD NE CZ NH1 NH2 REMARK 470 GLU I 330 CG CD OE1 OE2 REMARK 470 GLU I 385 CG CD OE1 OE2 REMARK 470 LYS I 401 CG CD CE NZ REMARK 470 ASN I 539 CG OD1 REMARK 470 LYS I 544 CG CD CE NZ REMARK 470 VAL I 545 CG1 CG2 REMARK 470 LYS M 544 CG CD CE NZ REMARK 470 VAL M 545 CG1 CG2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG D 1 P DG D 1 OP3 -0.087 REMARK 500 DG H 1 P DG H 1 OP3 -0.085 REMARK 500 DG L 1 P DG L 1 OP3 -0.085 REMARK 500 DG P 1 P DG P 1 OP3 -0.086 REMARK 500 LEU I 565 C PRO I 566 N 0.156 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 290 10.75 -67.36 REMARK 500 LYS A 291 175.73 179.11 REMARK 500 CYS A 415 -131.55 -106.38 REMARK 500 ASN A 539 -178.40 -66.17 REMARK 500 VAL A 545 24.26 -141.45 REMARK 500 HIS E 321 -153.22 -139.50 REMARK 500 LEU E 322 92.17 -160.02 REMARK 500 ASN E 407 108.71 -166.39 REMARK 500 CYS E 415 -138.98 -104.24 REMARK 500 ARG E 438 -19.24 -140.59 REMARK 500 SER E 509 -177.25 -68.65 REMARK 500 ASN E 539 -152.82 -105.43 REMARK 500 CYS E 543 -168.60 -69.76 REMARK 500 ARG E 573 38.44 -98.71 REMARK 500 ASN I 253 42.91 -150.53 REMARK 500 SER I 319 -7.50 -150.74 REMARK 500 LYS I 324 -35.45 -37.07 REMARK 500 ASN I 407 107.94 -167.22 REMARK 500 CYS I 415 -134.36 -107.91 REMARK 500 ARG I 438 -35.60 -134.44 REMARK 500 GLU I 454 0.18 -68.33 REMARK 500 ARG I 573 43.38 -104.18 REMARK 500 ASN M 407 106.83 -161.77 REMARK 500 CYS M 415 -138.76 -108.66 REMARK 500 ASN M 539 -164.44 -74.78 REMARK 500 LYS M 544 107.44 -45.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG H 1 0.06 SIDE CHAIN REMARK 500 DG L 1 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU I 565 -15.40 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1131 DISTANCE = 5.31 ANGSTROMS REMARK 525 HOH A1164 DISTANCE = 5.01 ANGSTROMS REMARK 525 HOH B 703 DISTANCE = 5.34 ANGSTROMS REMARK 525 HOH H 856 DISTANCE = 5.70 ANGSTROMS REMARK 525 HOH H 873 DISTANCE = 5.35 ANGSTROMS REMARK 525 HOH I1079 DISTANCE = 5.12 ANGSTROMS REMARK 525 HOH I1084 DISTANCE = 5.51 ANGSTROMS REMARK 525 HOH J 643 DISTANCE = 5.38 ANGSTROMS REMARK 525 HOH L 645 DISTANCE = 5.37 ANGSTROMS REMARK 525 HOH M1002 DISTANCE = 5.48 ANGSTROMS REMARK 525 HOH M1081 DISTANCE = 5.39 ANGSTROMS REMARK 525 HOH M1120 DISTANCE = 5.01 ANGSTROMS REMARK 525 HOH M1195 DISTANCE = 5.06 ANGSTROMS REMARK 525 HOH N 945 DISTANCE = 5.23 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 961 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG C 5 OP1 REMARK 620 2 SER A 339 O 173.7 REMARK 620 3 ILE A 341 O 91.3 91.9 REMARK 620 4 ALA A 344 O 93.3 92.6 81.2 REMARK 620 5 HOH C 8 O 89.8 88.0 170.5 89.3 REMARK 620 6 HOH C 156 O 87.5 86.7 97.4 178.4 92.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 991 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 702 O REMARK 620 2 HOH B 703 O 87.3 REMARK 620 3 HOH B 704 O 70.7 91.1 REMARK 620 4 HOH D 701 O 164.6 94.3 93.9 REMARK 620 5 HOH B 700 O 87.3 173.5 83.6 89.9 REMARK 620 6 HOH B 705 O 99.2 90.4 169.7 96.1 94.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA E 962 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER E 339 O REMARK 620 2 DG G 5 OP1 151.4 REMARK 620 3 ILE E 341 O 107.4 89.6 REMARK 620 4 ALA E 344 O 86.5 74.3 78.2 REMARK 620 5 HOH E1016 O 95.2 106.2 95.7 173.9 REMARK 620 6 HOH G 508 O 77.0 78.3 155.3 77.8 108.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG F 992 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH H 855 O REMARK 620 2 HOH F 858 O 85.7 REMARK 620 3 HOH H 856 O 90.9 88.5 REMARK 620 4 HOH F 859 O 102.0 166.4 102.4 REMARK 620 5 HOH F 857 O 87.4 79.7 168.2 89.3 REMARK 620 6 HOH F 854 O 159.1 88.0 108.8 80.9 71.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG H 993 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH H 868 O REMARK 620 2 HOH H 872 O 67.2 REMARK 620 3 HOH H 873 O 78.1 117.7 REMARK 620 4 HOH H 874 O 166.4 111.8 91.2 REMARK 620 5 HOH L 870 O 104.0 66.6 175.7 87.3 REMARK 620 6 HOH H 871 O 80.3 131.4 87.8 107.9 88.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA I 963 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH K 303 O REMARK 620 2 DG K 5 OP1 97.2 REMARK 620 3 SER I 339 O 100.5 162.1 REMARK 620 4 ILE I 341 O 105.0 85.4 87.4 REMARK 620 5 ALA I 344 O 174.3 77.6 84.7 72.5 REMARK 620 6 HOH K 875 O 108.3 83.0 94.0 145.9 73.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA J 965 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH L 645 O REMARK 620 2 HOH J 642 O 105.1 REMARK 620 3 HOH J 643 O 93.9 148.1 REMARK 620 4 HOH J 641 O 110.9 89.7 107.3 REMARK 620 5 HOH J 644 O 156.0 82.0 71.0 91.7 REMARK 620 6 HOH L 640 O 83.4 68.3 89.2 156.7 78.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA M 964 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA M 344 O REMARK 620 2 ILE M 341 O 84.7 REMARK 620 3 SER M 339 O 87.2 94.6 REMARK 620 4 DG O 5 OP1 91.9 97.5 167.7 REMARK 620 5 HOH M 978 O 171.1 101.9 86.4 93.1 REMARK 620 6 HOH O 39 O 79.9 164.6 84.2 83.6 93.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA N 966 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH P 940 O REMARK 620 2 HOH N 945 O 118.9 REMARK 620 3 HOH N 944 O 161.4 79.1 REMARK 620 4 HOH N 943 O 90.2 150.6 71.6 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 961 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA E 962 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA I 963 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA M 964 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA J 965 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA N 966 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 991 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG F 992 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG H 993 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC D 950
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XSN RELATED DB: PDB REMARK 900 RELATED ID: 1XSP RELATED DB: PDB
DBREF 1XSL A 242 575 UNP Q9UGP5 DPOL_HUMAN 242 575 DBREF 1XSL M 242 575 UNP Q9UGP5 DPOL_HUMAN 242 575 DBREF 1XSL E 242 575 UNP Q9UGP5 DPOL_HUMAN 242 575 DBREF 1XSL I 242 575 UNP Q9UGP5 DPOL_HUMAN 242 575 DBREF 1XSL B 1 11 PDB 1XSL 1XSL 1 11 DBREF 1XSL C 1 6 PDB 1XSL 1XSL 1 6 DBREF 1XSL D 1 4 PDB 1XSL 1XSL 1 4 DBREF 1XSL F 1 11 PDB 1XSL 1XSL 1 11 DBREF 1XSL G 1 6 PDB 1XSL 1XSL 1 6 DBREF 1XSL H 1 4 PDB 1XSL 1XSL 1 4 DBREF 1XSL J 1 11 PDB 1XSL 1XSL 1 11 DBREF 1XSL K 1 6 PDB 1XSL 1XSL 1 6 DBREF 1XSL L 1 4 PDB 1XSL 1XSL 1 4 DBREF 1XSL N 1 11 PDB 1XSL 1XSL 1 11 DBREF 1XSL O 1 6 PDB 1XSL 1XSL 1 6 DBREF 1XSL P 1 4 PDB 1XSL 1XSL 1 4
SEQADV 1XSL MET A 241 UNP Q9UGP5 INITIATING METHIONINE SEQADV 1XSL MET M 241 UNP Q9UGP5 INITIATING METHIONINE SEQADV 1XSL MET E 241 UNP Q9UGP5 INITIATING METHIONINE SEQADV 1XSL MET I 241 UNP Q9UGP5 INITIATING METHIONINE
SEQRES 1 B 11 DC DG DG DC DA DG DC DG DC DA DC SEQRES 1 C 6 DG DT DG DC DG DC SEQRES 1 D 4 DG DC DC DG SEQRES 1 F 11 DC DG DG DC DA DG DC DG DC DA DC SEQRES 1 G 6 DG DT DG DC DG DC SEQRES 1 H 4 DG DC DC DG SEQRES 1 J 11 DC DG DG DC DA DG DC DG DC DA DC SEQRES 1 K 6 DG DT DG DC DG DC SEQRES 1 L 4 DG DC DC DG SEQRES 1 N 11 DC DG DG DC DA DG DC DG DC DA DC SEQRES 1 O 6 DG DT DG DC DG DC SEQRES 1 P 4 DG DC DC DG SEQRES 1 A 335 MET ALA GLN PRO SER SER GLN LYS ALA THR ASN HIS ASN SEQRES 2 A 335 LEU HIS ILE THR GLU LYS LEU GLU VAL LEU ALA LYS ALA SEQRES 3 A 335 TYR SER VAL GLN GLY ASP LYS TRP ARG ALA LEU GLY TYR SEQRES 4 A 335 ALA LYS ALA ILE ASN ALA LEU LYS SER PHE HIS LYS PRO SEQRES 5 A 335 VAL THR SER TYR GLN GLU ALA CYS SER ILE PRO GLY ILE SEQRES 6 A 335 GLY LYS ARG MET ALA GLU LYS ILE ILE GLU ILE LEU GLU SEQRES 7 A 335 SER GLY HIS LEU ARG LYS LEU ASP HIS ILE SER GLU SER SEQRES 8 A 335 VAL PRO VAL LEU GLU LEU PHE SER ASN ILE TRP GLY ALA SEQRES 9 A 335 GLY THR LYS THR ALA GLN MET TRP TYR GLN GLN GLY PHE SEQRES 10 A 335 ARG SER LEU GLU ASP ILE ARG SER GLN ALA SER LEU THR SEQRES 11 A 335 THR GLN GLN ALA ILE GLY LEU LYS HIS TYR SER ASP PHE SEQRES 12 A 335 LEU GLU ARG MET PRO ARG GLU GLU ALA THR GLU ILE GLU SEQRES 13 A 335 GLN THR VAL GLN LYS ALA ALA GLN ALA PHE ASN SER GLY SEQRES 14 A 335 LEU LEU CYS VAL ALA CYS GLY SER TYR ARG ARG GLY LYS SEQRES 15 A 335 ALA THR CYS GLY ASP VAL ASP VAL LEU ILE THR HIS PRO SEQRES 16 A 335 ASP GLY ARG SER HIS ARG GLY ILE PHE SER ARG LEU LEU SEQRES 17 A 335 ASP SER LEU ARG GLN GLU GLY PHE LEU THR ASP ASP LEU SEQRES 18 A 335 VAL SER GLN GLU GLU ASN GLY GLN GLN GLN LYS TYR LEU SEQRES 19 A 335 GLY VAL CYS ARG LEU PRO GLY PRO GLY ARG ARG HIS ARG SEQRES 20 A 335 ARG LEU ASP ILE ILE VAL VAL PRO TYR SER GLU PHE ALA SEQRES 21 A 335 CYS ALA LEU LEU TYR PHE THR GLY SER ALA HIS PHE ASN SEQRES 22 A 335 ARG SER MET ARG ALA LEU ALA LYS THR LYS GLY MET SER SEQRES 23 A 335 LEU SER GLU HIS ALA LEU SER THR ALA VAL VAL ARG ASN SEQRES 24 A 335 THR HIS GLY CYS LYS VAL GLY PRO GLY ARG VAL LEU PRO SEQRES 25 A 335 THR PRO THR GLU LYS ASP VAL PHE ARG LEU LEU GLY LEU SEQRES 26 A 335 PRO TYR ARG GLU PRO ALA GLU ARG ASP TRP SEQRES 1 E 335 MET ALA GLN PRO SER SER GLN LYS ALA THR ASN HIS ASN SEQRES 2 E 335 LEU HIS ILE THR GLU LYS LEU GLU VAL LEU ALA LYS ALA SEQRES 3 E 335 TYR SER VAL GLN GLY ASP LYS TRP ARG ALA LEU GLY TYR SEQRES 4 E 335 ALA LYS ALA ILE ASN ALA LEU LYS SER PHE HIS LYS PRO SEQRES 5 E 335 VAL THR SER TYR GLN GLU ALA CYS SER ILE PRO GLY ILE SEQRES 6 E 335 GLY LYS ARG MET ALA GLU LYS ILE ILE GLU ILE LEU GLU SEQRES 7 E 335 SER GLY HIS LEU ARG LYS LEU ASP HIS ILE SER GLU SER SEQRES 8 E 335 VAL PRO VAL LEU GLU LEU PHE SER ASN ILE TRP GLY ALA SEQRES 9 E 335 GLY THR LYS THR ALA GLN MET TRP TYR GLN GLN GLY PHE SEQRES 10 E 335 ARG SER LEU GLU ASP ILE ARG SER GLN ALA SER LEU THR SEQRES 11 E 335 THR GLN GLN ALA ILE GLY LEU LYS HIS TYR SER ASP PHE SEQRES 12 E 335 LEU GLU ARG MET PRO ARG GLU GLU ALA THR GLU ILE GLU SEQRES 13 E 335 GLN THR VAL GLN LYS ALA ALA GLN ALA PHE ASN SER GLY SEQRES 14 E 335 LEU LEU CYS VAL ALA CYS GLY SER TYR ARG ARG GLY LYS SEQRES 15 E 335 ALA THR CYS GLY ASP VAL ASP VAL LEU ILE THR HIS PRO SEQRES 16 E 335 ASP GLY ARG SER HIS ARG GLY ILE PHE SER ARG LEU LEU SEQRES 17 E 335 ASP SER LEU ARG GLN GLU GLY PHE LEU THR ASP ASP LEU SEQRES 18 E 335 VAL SER GLN GLU GLU ASN GLY GLN GLN GLN LYS TYR LEU SEQRES 19 E 335 GLY VAL CYS ARG LEU PRO GLY PRO GLY ARG ARG HIS ARG SEQRES 20 E 335 ARG LEU ASP ILE ILE VAL VAL PRO TYR SER GLU PHE ALA SEQRES 21 E 335 CYS ALA LEU LEU TYR PHE THR GLY SER ALA HIS PHE ASN SEQRES 22 E 335 ARG SER MET ARG ALA LEU ALA LYS THR LYS GLY MET SER SEQRES 23 E 335 LEU SER GLU HIS ALA LEU SER THR ALA VAL VAL ARG ASN SEQRES 24 E 335 THR HIS GLY CYS LYS VAL GLY PRO GLY ARG VAL LEU PRO SEQRES 25 E 335 THR PRO THR GLU LYS ASP VAL PHE ARG LEU LEU GLY LEU SEQRES 26 E 335 PRO TYR ARG GLU PRO ALA GLU ARG ASP TRP SEQRES 1 I 335 MET ALA GLN PRO SER SER GLN LYS ALA THR ASN HIS ASN SEQRES 2 I 335 LEU HIS ILE THR GLU LYS LEU GLU VAL LEU ALA LYS ALA SEQRES 3 I 335 TYR SER VAL GLN GLY ASP LYS TRP ARG ALA LEU GLY TYR SEQRES 4 I 335 ALA LYS ALA ILE ASN ALA LEU LYS SER PHE HIS LYS PRO SEQRES 5 I 335 VAL THR SER TYR GLN GLU ALA CYS SER ILE PRO GLY ILE SEQRES 6 I 335 GLY LYS ARG MET ALA GLU LYS ILE ILE GLU ILE LEU GLU SEQRES 7 I 335 SER GLY HIS LEU ARG LYS LEU ASP HIS ILE SER GLU SER SEQRES 8 I 335 VAL PRO VAL LEU GLU LEU PHE SER ASN ILE TRP GLY ALA SEQRES 9 I 335 GLY THR LYS THR ALA GLN MET TRP TYR GLN GLN GLY PHE SEQRES 10 I 335 ARG SER LEU GLU ASP ILE ARG SER GLN ALA SER LEU THR SEQRES 11 I 335 THR GLN GLN ALA ILE GLY LEU LYS HIS TYR SER ASP PHE SEQRES 12 I 335 LEU GLU ARG MET PRO ARG GLU GLU ALA THR GLU ILE GLU SEQRES 13 I 335 GLN THR VAL GLN LYS ALA ALA GLN ALA PHE ASN SER GLY SEQRES 14 I 335 LEU LEU CYS VAL ALA CYS GLY SER TYR ARG ARG GLY LYS SEQRES 15 I 335 ALA THR CYS GLY ASP VAL ASP VAL LEU ILE THR HIS PRO SEQRES 16 I 335 ASP GLY ARG SER HIS ARG GLY ILE PHE SER ARG LEU LEU SEQRES 17 I 335 ASP SER LEU ARG GLN GLU GLY PHE LEU THR ASP ASP LEU SEQRES 18 I 335 VAL SER GLN GLU GLU ASN GLY GLN GLN GLN LYS TYR LEU SEQRES 19 I 335 GLY VAL CYS ARG LEU PRO GLY PRO GLY ARG ARG HIS ARG SEQRES 20 I 335 ARG LEU ASP ILE ILE VAL VAL PRO TYR SER GLU PHE ALA SEQRES 21 I 335 CYS ALA LEU LEU TYR PHE THR GLY SER ALA HIS PHE ASN SEQRES 22 I 335 ARG SER MET ARG ALA LEU ALA LYS THR LYS GLY MET SER SEQRES 23 I 335 LEU SER GLU HIS ALA LEU SER THR ALA VAL VAL ARG ASN SEQRES 24 I 335 THR HIS GLY CYS LYS VAL GLY PRO GLY ARG VAL LEU PRO SEQRES 25 I 335 THR PRO THR GLU LYS ASP VAL PHE ARG LEU LEU GLY LEU SEQRES 26 I 335 PRO TYR ARG GLU PRO ALA GLU ARG ASP TRP SEQRES 1 M 335 MET ALA GLN PRO SER SER GLN LYS ALA THR ASN HIS ASN SEQRES 2 M 335 LEU HIS ILE THR GLU LYS LEU GLU VAL LEU ALA LYS ALA SEQRES 3 M 335 TYR SER VAL GLN GLY ASP LYS TRP ARG ALA LEU GLY TYR SEQRES 4 M 335 ALA LYS ALA ILE ASN ALA LEU LYS SER PHE HIS LYS PRO SEQRES 5 M 335 VAL THR SER TYR GLN GLU ALA CYS SER ILE PRO GLY ILE SEQRES 6 M 335 GLY LYS ARG MET ALA GLU LYS ILE ILE GLU ILE LEU GLU SEQRES 7 M 335 SER GLY HIS LEU ARG LYS LEU ASP HIS ILE SER GLU SER SEQRES 8 M 335 VAL PRO VAL LEU GLU LEU PHE SER ASN ILE TRP GLY ALA SEQRES 9 M 335 GLY THR LYS THR ALA GLN MET TRP TYR GLN GLN GLY PHE SEQRES 10 M 335 ARG SER LEU GLU ASP ILE ARG SER GLN ALA SER LEU THR SEQRES 11 M 335 THR GLN GLN ALA ILE GLY LEU LYS HIS TYR SER ASP PHE SEQRES 12 M 335 LEU GLU ARG MET PRO ARG GLU GLU ALA THR GLU ILE GLU SEQRES 13 M 335 GLN THR VAL GLN LYS ALA ALA GLN ALA PHE ASN SER GLY SEQRES 14 M 335 LEU LEU CYS VAL ALA CYS GLY SER TYR ARG ARG GLY LYS SEQRES 15 M 335 ALA THR CYS GLY ASP VAL ASP VAL LEU ILE THR HIS PRO SEQRES 16 M 335 ASP GLY ARG SER HIS ARG GLY ILE PHE SER ARG LEU LEU SEQRES 17 M 335 ASP SER LEU ARG GLN GLU GLY PHE LEU THR ASP ASP LEU SEQRES 18 M 335 VAL SER GLN GLU GLU ASN GLY GLN GLN GLN LYS TYR LEU SEQRES 19 M 335 GLY VAL CYS ARG LEU PRO GLY PRO GLY ARG ARG HIS ARG SEQRES 20 M 335 ARG LEU ASP ILE ILE VAL VAL PRO TYR SER GLU PHE ALA SEQRES 21 M 335 CYS ALA LEU LEU TYR PHE THR GLY SER ALA HIS PHE ASN SEQRES 22 M 335 ARG SER MET ARG ALA LEU ALA LYS THR LYS GLY MET SER SEQRES 23 M 335 LEU SER GLU HIS ALA LEU SER THR ALA VAL VAL ARG ASN SEQRES 24 M 335 THR HIS GLY CYS LYS VAL GLY PRO GLY ARG VAL LEU PRO SEQRES 25 M 335 THR PRO THR GLU LYS ASP VAL PHE ARG LEU LEU GLY LEU SEQRES 26 M 335 PRO TYR ARG GLU PRO ALA GLU ARG ASP TRP
HET NA A 961 1 HET NA E 962 1 HET NA I 963 1 HET NA M 964 1 HET NA J 965 1 HET NA N 966 1 HET MG B 991 1 HET MG F 992 1 HET MG H 993 1 HET CAC D 950 5
HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION HETNAM CAC CACODYLATE ION
HETSYN CAC DIMETHYLARSINATE
FORMUL 17 NA 6(NA 1+) FORMUL 23 MG 3(MG 2+) FORMUL 26 CAC C2 H6 AS O2 1- FORMUL 27 HOH *843(H2 O)
HELIX 1 1 ASN A 253 GLN A 270 1 18 HELIX 2 2 ASP A 272 SER A 288 1 17 HELIX 3 3 SER A 295 ILE A 302 1 8 HELIX 4 4 GLY A 306 GLY A 320 1 15 HELIX 5 5 LEU A 322 HIS A 327 1 6 HELIX 6 6 SER A 331 ASN A 340 1 10 HELIX 7 7 GLY A 345 GLN A 355 1 11 HELIX 8 8 SER A 359 ALA A 367 1 9 HELIX 9 9 THR A 370 HIS A 379 1 10 HELIX 10 10 HIS A 379 GLU A 385 1 7 HELIX 11 11 ARG A 389 ALA A 405 1 17 HELIX 12 12 CYS A 415 ARG A 420 1 6 HELIX 13 13 ILE A 443 GLU A 454 1 12 HELIX 14 14 PRO A 495 SER A 497 5 3 HELIX 15 15 GLU A 498 GLY A 508 1 11 HELIX 16 16 SER A 509 LYS A 523 1 15 HELIX 17 17 THR A 555 LEU A 563 1 9 HELIX 18 18 GLU A 569 ARG A 573 5 5 HELIX 19 19 ASN E 253 GLN E 270 1 18 HELIX 20 20 ASP E 272 SER E 288 1 17 HELIX 21 21 SER E 295 SER E 301 1 7 HELIX 22 22 GLY E 306 GLY E 320 1 15 HELIX 23 23 LEU E 322 HIS E 327 1 6 HELIX 24 24 SER E 331 SER E 339 1 9 HELIX 25 25 GLY E 345 GLN E 355 1 11 HELIX 26 26 SER E 359 ALA E 367 1 9 HELIX 27 27 THR E 370 HIS E 379 1 10 HELIX 28 28 HIS E 379 GLU E 385 1 7 HELIX 29 29 ARG E 389 ALA E 405 1 17 HELIX 30 30 CYS E 415 ARG E 420 1 6 HELIX 31 31 ILE E 443 GLU E 454 1 12 HELIX 32 32 PRO E 495 GLY E 508 1 14 HELIX 33 33 SER E 509 LYS E 523 1 15 HELIX 34 34 THR E 555 GLY E 564 1 10 HELIX 35 35 GLU E 569 ARG E 573 5 5 HELIX 36 36 ASN I 253 GLN I 270 1 18 HELIX 37 37 ASP I 272 SER I 288 1 17 HELIX 38 38 SER I 295 SER I 301 1 7 HELIX 39 39 GLY I 306 GLY I 320 1 15 HELIX 40 40 LEU I 322 ILE I 328 5 7 HELIX 41 41 SER I 331 ASN I 340 1 10 HELIX 42 42 GLY I 345 GLN I 355 1 11 HELIX 43 43 SER I 359 ALA I 367 1 9 HELIX 44 44 THR I 370 HIS I 379 1 10 HELIX 45 45 HIS I 379 GLU I 385 1 7 HELIX 46 46 ARG I 389 GLN I 404 1 16 HELIX 47 47 CYS I 415 ARG I 420 1 6 HELIX 48 48 GLY I 442 GLU I 454 1 13 HELIX 49 49 PRO I 495 SER I 497 5 3 HELIX 50 50 GLU I 498 GLY I 508 1 11 HELIX 51 51 SER I 509 LYS I 523 1 15 HELIX 52 52 THR I 555 LEU I 563 1 9 HELIX 53 53 GLU I 569 ARG I 573 5 5 HELIX 54 54 ASN M 253 GLN M 270 1 18 HELIX 55 55 ASP M 272 PHE M 289 1 18 HELIX 56 56 SER M 295 ILE M 302 1 8 HELIX 57 57 GLY M 306 GLY M 320 1 15 HELIX 58 58 LEU M 322 HIS M 327 5 6 HELIX 59 59 SER M 331 ASN M 340 1 10 HELIX 60 60 GLY M 345 GLN M 355 1 11 HELIX 61 61 SER M 359 ALA M 367 1 9 HELIX 62 62 THR M 370 HIS M 379 1 10 HELIX 63 63 HIS M 379 GLU M 385 1 7 HELIX 64 64 ARG M 389 ALA M 405 1 17 HELIX 65 65 CYS M 415 ARG M 420 1 6 HELIX 66 66 ILE M 443 GLU M 454 1 12 HELIX 67 67 PRO M 495 SER M 497 5 3 HELIX 68 68 GLU M 498 GLY M 508 1 11 HELIX 69 69 SER M 509 LYS M 523 1 15 HELIX 70 70 THR M 555 LEU M 563 1 9 HELIX 71 71 GLU M 569 ARG M 573 5 5
SHEET 1 A 2 MET A 387 PRO A 388 0 SHEET 2 A 2 THR A 424 CYS A 425 -1 O CYS A 425 N MET A 387 SHEET 1 B 5 LEU A 411 ALA A 414 0 SHEET 2 B 5 VAL A 428 THR A 433 -1 O THR A 433 N LEU A 411 SHEET 3 B 5 ARG A 487 VAL A 493 1 O ILE A 492 N ILE A 432 SHEET 4 B 5 GLN A 470 CYS A 477 -1 N CYS A 477 O ARG A 487 SHEET 5 B 5 LEU A 457 ASN A 467 -1 N ASN A 467 O GLN A 470 SHEET 1 C 2 MET A 525 LEU A 527 0 SHEET 2 C 2 LEU A 532 THR A 534 -1 O SER A 533 N SER A 526 SHEET 1 D 2 MET E 387 PRO E 388 0 SHEET 2 D 2 THR E 424 CYS E 425 -1 O CYS E 425 N MET E 387 SHEET 1 E 5 LEU E 411 ALA E 414 0 SHEET 2 E 5 VAL E 428 THR E 433 -1 O LEU E 431 N VAL E 413 SHEET 3 E 5 ARG E 487 VAL E 493 1 O ILE E 492 N ILE E 432 SHEET 4 E 5 GLN E 470 CYS E 477 -1 N GLN E 471 O VAL E 493 SHEET 5 E 5 LEU E 457 ASN E 467 -1 N LEU E 461 O LEU E 474 SHEET 1 F 3 MET E 525 LEU E 527 0 SHEET 2 F 3 LEU E 532 THR E 534 -1 O SER E 533 N SER E 526 SHEET 3 F 3 VAL E 550 LEU E 551 -1 O LEU E 551 N LEU E 532 SHEET 1 G 2 MET I 387 PRO I 388 0 SHEET 2 G 2 THR I 424 CYS I 425 -1 O CYS I 425 N MET I 387 SHEET 1 H 5 LEU I 411 ALA I 414 0 SHEET 2 H 5 VAL I 428 THR I 433 -1 O THR I 433 N LEU I 411 SHEET 3 H 5 ARG I 487 VAL I 493 1 O ILE I 492 N ILE I 432 SHEET 4 H 5 GLN I 470 CYS I 477 -1 N GLY I 475 O LEU I 489 SHEET 5 H 5 LEU I 457 ASN I 467 -1 N ASP I 459 O VAL I 476 SHEET 1 I 3 MET I 525 LEU I 527 0 SHEET 2 I 3 LEU I 532 THR I 534 -1 O SER I 533 N SER I 526 SHEET 3 I 3 VAL I 550 LEU I 551 -1 O LEU I 551 N LEU I 532 SHEET 1 J 2 VAL I 537 ARG I 538 0 SHEET 2 J 2 LYS I 544 GLY I 546 -1 O VAL I 545 N VAL I 537 SHEET 1 K 2 MET M 387 PRO M 388 0 SHEET 2 K 2 THR M 424 CYS M 425 -1 O CYS M 425 N MET M 387 SHEET 1 L 5 LEU M 411 ALA M 414 0 SHEET 2 L 5 VAL M 428 THR M 433 -1 O LEU M 431 N VAL M 413 SHEET 3 L 5 ARG M 487 VAL M 493 1 O ILE M 492 N ILE M 432 SHEET 4 L 5 GLN M 470 CYS M 477 -1 N GLY M 475 O LEU M 489 SHEET 5 L 5 LEU M 457 ASN M 467 -1 N VAL M 462 O LEU M 474 SHEET 1 M 3 MET M 525 LEU M 527 0 SHEET 2 M 3 LEU M 532 THR M 534 -1 O SER M 533 N SER M 526 SHEET 3 M 3 VAL M 550 LEU M 551 -1 O LEU M 551 N LEU M 532 SHEET 1 N 2 VAL M 537 ARG M 538 0 SHEET 2 N 2 LYS M 544 GLY M 546 -1 O VAL M 545 N VAL M 537
SSBOND 1 CYS A 543 CYS M 543 1555 1555 2.02
LINK NA NA A 961 OP1 DG C 5 1555 1555 2.45 LINK NA NA A 961 O SER A 339 1555 1555 2.47 LINK MG MG B 991 O HOH B 702 1555 1555 2.08 LINK MG MG B 991 O HOH B 703 1555 1555 2.08 LINK MG MG B 991 O HOH B 704 1555 1555 2.07 LINK MG MG B 991 O HOH D 701 1555 1555 2.14 LINK MG MG B 991 O HOH B 700 1555 1555 1.99 LINK MG MG B 991 O HOH B 705 1555 1555 2.65 LINK NA NA E 962 O SER E 339 1555 1555 2.60 LINK NA NA E 962 OP1 DG G 5 1555 1555 2.57 LINK MG MG F 992 O HOH H 855 1555 1555 2.25 LINK MG MG F 992 O HOH F 858 1555 1555 2.17 LINK MG MG F 992 O HOH H 856 1555 1555 1.91 LINK MG MG F 992 O HOH F 859 1555 1555 2.16 LINK MG MG F 992 O HOH F 857 1555 1555 1.91 LINK MG MG F 992 O HOH F 854 1555 1555 2.32 LINK MG MG H 993 O HOH H 868 1555 1555 1.61 LINK MG MG H 993 O HOH H 872 1555 1555 2.67 LINK MG MG H 993 O HOH H 873 1555 1555 1.92 LINK MG MG H 993 O HOH H 874 1555 1555 1.92 LINK MG MG H 993 O HOH L 870 1555 1555 2.36 LINK MG MG H 993 O HOH H 871 1555 1555 2.30 LINK NA NA I 963 O HOH K 303 1555 1555 2.48 LINK NA NA I 963 OP1 DG K 5 1555 1555 2.55 LINK NA NA I 963 O SER I 339 1555 1555 2.49 LINK NA NA J 965 O HOH L 645 1555 1555 2.34 LINK NA NA J 965 O HOH J 642 1555 1555 2.24 LINK NA NA J 965 O HOH J 643 1555 1555 2.36 LINK NA NA J 965 O HOH J 641 1555 1555 2.36 LINK NA NA M 964 O ALA M 344 1555 1555 2.42 LINK NA NA M 964 O ILE M 341 1555 1555 2.59 LINK NA NA M 964 O SER M 339 1555 1555 2.41 LINK NA NA M 964 OP1 DG O 5 1555 1555 2.32 LINK NA NA N 966 O HOH P 940 1555 1555 2.31 LINK NA NA N 966 O HOH N 945 1555 1555 2.22 LINK NA NA N 966 O HOH N 944 1555 1555 2.40 LINK NA NA N 966 O HOH N 943 1555 1555 2.03 LINK O ILE A 341 NA NA A 961 1555 1555 2.67 LINK O ALA A 344 NA NA A 961 1555 1555 2.65 LINK O ILE E 341 NA NA E 962 1555 1555 2.71 LINK O ALA E 344 NA NA E 962 1555 1555 2.79 LINK O ILE I 341 NA NA I 963 1555 1555 2.82 LINK O ALA I 344 NA NA I 963 1555 1555 2.80 LINK NA NA A 961 O HOH C 8 1555 1555 2.60 LINK NA NA A 961 O HOH C 156 1555 1555 2.84 LINK NA NA E 962 O HOH E1016 1555 1555 2.79 LINK NA NA E 962 O HOH G 508 1555 1555 2.93 LINK NA NA I 963 O HOH K 875 1555 1555 2.74 LINK NA NA M 964 O HOH M 978 1555 1555 2.69 LINK NA NA M 964 O HOH O 39 1555 1555 2.62 LINK NA NA J 965 O HOH J 644 1555 1555 2.60 LINK NA NA J 965 O HOH L 640 1555 1555 2.61
CISPEP 1 GLY A 508 SER A 509 0 -0.09 CISPEP 2 GLY E 508 SER E 509 0 0.23 CISPEP 3 GLY I 508 SER I 509 0 0.05 CISPEP 4 GLY M 508 SER M 509 0 0.91
SITE 1 AC1 6 SER A 339 ILE A 341 ALA A 344 DG C 5 SITE 2 AC1 6 HOH C 8 HOH C 156 SITE 1 AC2 6 SER E 339 ILE E 341 ALA E 344 HOH E1016 SITE 2 AC2 6 DG G 5 HOH G 508 SITE 1 AC3 6 SER I 339 ILE I 341 ALA I 344 DG K 5 SITE 2 AC3 6 HOH K 303 HOH K 875 SITE 1 AC4 6 SER M 339 ILE M 341 ALA M 344 HOH M 978 SITE 2 AC4 6 DG O 5 HOH O 39 SITE 1 AC5 6 HOH J 641 HOH J 642 HOH J 643 HOH J 644 SITE 2 AC5 6 HOH L 640 HOH L 645 SITE 1 AC6 4 HOH N 943 HOH N 944 HOH N 945 HOH P 940 SITE 1 AC7 6 HOH B 700 HOH B 702 HOH B 703 HOH B 704 SITE 2 AC7 6 HOH B 705 HOH D 701 SITE 1 AC8 6 HOH F 854 HOH F 857 HOH F 858 HOH F 859 SITE 2 AC8 6 HOH H 855 HOH H 856 SITE 1 AC9 6 HOH H 868 HOH H 871 HOH H 872 HOH H 873 SITE 2 AC9 6 HOH H 874 HOH L 870 SITE 1 BC1 3 DC D 3 DG D 4 DG P 4
CRYST1 191.504 98.812 104.519 90.00 90.00 90.00 P 21 21 2 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.005222 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010120 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009568 0.00000