10 20 30 40 50 60 70 80 1XSF - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CELL CYCLE, HYDROLASE 19-OCT-04 1XSF
TITLE SOLUTION STRUCTURE OF A RESUSCITATION PROMOTING FACTOR TITLE 2 DOMAIN FROM MYCOBACTERIUM TUBERCULOSIS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE RESUSCITATION-PROMOTING FACTOR RPFB; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RPFBC DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: RV1009; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B
KEYWDS LYSOZYME-LIKE STRUCTURE, CELL CYCLE, HYDROLASE
EXPDTA SOLUTION NMR
NUMMDL 30
AUTHOR M.COHEN-GONSAUD,P.BARTHE,B.HENDERSON,J.WARD,C.ROUMESTAND, AUTHOR 2 N.H.KEEP
REVDAT 4 24-FEB-09 1XSF 1 VERSN REVDAT 3 22-MAR-05 1XSF 1 JRNL REVDAT 2 01-MAR-05 1XSF 1 JRNL REVDAT 1 15-FEB-05 1XSF 0
JRNL AUTH M.COHEN-GONSAUD,P.BARTHE,C.BAGNERIS,B.HENDERSON, JRNL AUTH 2 J.WARD,C.ROUMESTAND,N.H.KEEP JRNL TITL THE STRUCTURE OF A RESUSCITATION-PROMOTING FACTOR JRNL TITL 2 DOMAIN FROM MYCOBACTERIUM TUBERCULOSIS SHOWS JRNL TITL 3 HOMOLOGY TO LYSOZYMES JRNL REF NAT.STRUCT.MOL.BIOL. V. 12 270 2005 JRNL REFN ISSN 1545-9993 JRNL PMID 15723078 JRNL DOI 10.1038/NSMB905
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.COHEN-GONSAUD,P.BARTHE,F.POMMIER,R.HARRIS, REMARK 1 AUTH 2 P.C.DRISCOLL,N.H.KEEP,C.ROUMESTAND REMARK 1 TITL LETTER TO THE EDITOR: (1)H, (15)N, AND (13)C REMARK 1 TITL 2 CHEMICAL SHIFT ASSIGNMENTS OF THE RESUSCITATION REMARK 1 TITL 3 PROMOTING FACTOR DOMAIN OF RV1009 FROM REMARK 1 TITL 4 MYCOBACTERIUM TUBERCULOSIS REMARK 1 REF J.BIOMOL.NMR V. 30 373 2004 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 15614636 REMARK 1 DOI 10.1007/S10858-004-3466-X
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 1757 RESTRAINTS, 1613 ARE NOE-DERIVED DISTANCE CONSTRAINTS, REMARK 3 124 DIHEDRAL ANGLE RESTRAINTS, 20 DISTANCE RESTRAINTS FROM REMARK 3 HYDROGEN BONDS.
REMARK 4 REMARK 4 1XSF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-OCT-04. REMARK 100 THE RCSB ID CODE IS RCSB030714.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 4.6 REMARK 210 IONIC STRENGTH : 25MM NA-ACETATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5MM RPFBC DOMAIN U-15N; REMARK 210 25MM NA-ACETATE; 2MM BETA- REMARK 210 MERCAPTOETHANOL; 90% H2O, 10% REMARK 210 D2O; 0.5MM RPFBC DOMAIN U-15N, REMARK 210 13C; 25MM NA-ACETATE; 2MM BETA REMARK 210 -MERCAPTOETHANOL; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED TOCSY, HNCA, REMARK 210 HN(CO)CA, CBCA(CO)NH, HNCO REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : GIFA 4.4, NMRVIEW 5.0.4, REMARK 210 TALOS 3, ARIA 1.2 REMARK 210 METHOD USED : MOLECULAR DYNAMICS IN REMARK 210 EXPLICIT SOLVENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 11 -71.72 -66.92 REMARK 500 1 VAL A 12 77.79 25.73 REMARK 500 1 THR A 16 -46.48 -147.87 REMARK 500 1 ALA A 71 125.22 165.33 REMARK 500 1 PRO A 72 -5.97 -53.71 REMARK 500 1 PRO A 99 -139.39 -64.73 REMARK 500 2 ALA A 7 -165.15 -124.46 REMARK 500 2 HIS A 8 -9.81 75.92 REMARK 500 2 VAL A 12 84.58 27.97 REMARK 500 2 ALA A 71 125.48 163.26 REMARK 500 2 PRO A 72 -4.00 -55.16 REMARK 500 2 PRO A 99 -94.20 -70.99 REMARK 500 3 VAL A 12 84.33 21.52 REMARK 500 3 THR A 16 -21.99 63.98 REMARK 500 3 LYS A 17 74.94 -114.05 REMARK 500 3 GLU A 21 87.94 47.01 REMARK 500 3 ALA A 71 128.92 162.67 REMARK 500 3 PRO A 72 -4.93 -57.35 REMARK 500 3 PRO A 99 -88.38 -73.95 REMARK 500 4 VAL A 11 -73.26 -99.90 REMARK 500 4 VAL A 12 75.32 21.34 REMARK 500 4 ASN A 46 103.72 -171.24 REMARK 500 4 ALA A 71 126.96 169.10 REMARK 500 4 PRO A 72 -5.90 -56.85 REMARK 500 4 PRO A 99 -138.89 -62.97 REMARK 500 5 PRO A 6 111.42 -39.18 REMARK 500 5 ALA A 10 54.19 -109.66 REMARK 500 5 VAL A 11 -67.04 -124.09 REMARK 500 5 VAL A 12 81.19 26.18 REMARK 500 5 LYS A 17 77.10 32.77 REMARK 500 5 PRO A 18 118.14 -34.10 REMARK 500 5 ALA A 71 128.73 161.57 REMARK 500 5 PRO A 72 -6.68 -54.90 REMARK 500 5 PRO A 99 -131.30 -63.08 REMARK 500 6 HIS A 8 -0.23 69.58 REMARK 500 6 VAL A 12 80.55 25.91 REMARK 500 6 LYS A 17 72.61 37.69 REMARK 500 6 ALA A 71 130.27 161.81 REMARK 500 6 PRO A 72 -2.13 -58.33 REMARK 500 6 TRP A 95 24.39 -141.17 REMARK 500 6 PRO A 99 -110.10 -67.34 REMARK 500 7 ALA A 7 24.80 -77.36 REMARK 500 7 VAL A 12 105.11 54.69 REMARK 500 7 GLU A 21 84.64 46.65 REMARK 500 7 ALA A 71 127.14 166.32 REMARK 500 7 PRO A 72 -7.18 -55.91 REMARK 500 7 PRO A 99 -88.54 -74.77 REMARK 500 8 VAL A 3 108.01 -59.29 REMARK 500 8 VAL A 12 74.76 23.02 REMARK 500 8 CYS A 37 -62.85 -97.22 REMARK 500 8 ALA A 71 127.12 165.94 REMARK 500 8 PRO A 72 -0.80 -56.20 REMARK 500 8 PRO A 99 -87.09 -74.43 REMARK 500 9 ALA A 7 102.69 71.95 REMARK 500 9 VAL A 12 73.79 -68.45 REMARK 500 9 ALA A 71 129.05 163.99 REMARK 500 9 PRO A 72 -3.02 -58.46 REMARK 500 9 PRO A 99 -101.70 -70.52 REMARK 500 10 ALA A 10 66.59 -109.50 REMARK 500 10 VAL A 12 79.03 26.00 REMARK 500 10 ALA A 71 127.27 170.22 REMARK 500 10 PRO A 72 -0.96 -58.32 REMARK 500 10 PRO A 99 -141.76 -64.14 REMARK 500 11 VAL A 12 88.16 36.68 REMARK 500 11 ASN A 46 96.05 -165.20 REMARK 500 11 ALA A 71 129.56 160.42 REMARK 500 11 PRO A 72 -4.12 -58.18 REMARK 500 11 TRP A 95 19.45 -145.89 REMARK 500 11 PRO A 99 -138.17 -61.99 REMARK 500 12 VAL A 12 72.39 5.38 REMARK 500 12 GLU A 21 77.92 37.26 REMARK 500 12 ALA A 71 128.39 159.13 REMARK 500 12 PRO A 72 -6.08 -55.64 REMARK 500 12 PRO A 99 -90.85 -77.20 REMARK 500 13 VAL A 2 87.88 56.26 REMARK 500 13 ALA A 10 64.15 -104.29 REMARK 500 13 VAL A 12 90.49 41.65 REMARK 500 13 LYS A 17 78.76 37.63 REMARK 500 13 CYS A 37 -64.78 -92.47 REMARK 500 13 ALA A 71 127.55 164.72 REMARK 500 13 PRO A 72 -3.44 -59.03 REMARK 500 13 PRO A 99 -89.96 -72.85 REMARK 500 14 VAL A 2 34.85 -91.36 REMARK 500 14 HIS A 8 -11.03 164.66 REMARK 500 14 VAL A 12 84.78 11.74 REMARK 500 14 CYS A 37 -63.13 -91.03 REMARK 500 14 ALA A 71 126.23 170.74 REMARK 500 14 PRO A 72 -6.15 -56.43 REMARK 500 14 PRO A 99 -91.29 -72.53 REMARK 500 15 ALA A 10 69.03 -150.33 REMARK 500 15 VAL A 12 79.75 31.34 REMARK 500 15 ARG A 13 124.33 47.73 REMARK 500 15 CYS A 37 -60.11 -94.19 REMARK 500 15 ALA A 71 129.12 164.12 REMARK 500 15 PRO A 72 -4.75 -57.14 REMARK 500 15 PRO A 99 -137.01 -62.34 REMARK 500 16 ALA A 10 65.24 -153.05 REMARK 500 16 VAL A 12 85.26 29.68 REMARK 500 16 ASN A 46 101.37 -160.42 REMARK 500 16 ALA A 71 129.60 165.77 REMARK 500 16 PRO A 72 0.22 -61.02 REMARK 500 16 PRO A 99 -93.12 -71.09 REMARK 500 17 VAL A 3 96.96 -66.07 REMARK 500 17 ALA A 7 -166.01 57.79 REMARK 500 17 ALA A 10 81.06 -150.17 REMARK 500 17 VAL A 12 84.11 34.27 REMARK 500 17 ALA A 71 122.38 179.16 REMARK 500 17 PRO A 72 1.58 -61.20 REMARK 500 17 PRO A 99 -133.68 -63.70 REMARK 500 18 ALA A 7 -157.42 53.33 REMARK 500 18 HIS A 8 -21.16 71.52 REMARK 500 18 VAL A 12 86.70 34.33 REMARK 500 18 LYS A 17 79.06 33.83 REMARK 500 18 ALA A 71 126.86 175.34 REMARK 500 18 PRO A 72 3.86 -62.46 REMARK 500 18 PRO A 99 -134.63 -64.43 REMARK 500 19 VAL A 3 122.93 -30.68 REMARK 500 19 VAL A 12 82.14 34.90 REMARK 500 19 ARG A 13 133.29 64.17 REMARK 500 19 CYS A 37 -66.72 -90.87 REMARK 500 19 ALA A 71 124.35 168.35 REMARK 500 19 PRO A 72 -7.38 -54.98 REMARK 500 19 PRO A 99 -98.72 -73.44 REMARK 500 20 VAL A 12 77.92 29.61 REMARK 500 20 ASP A 58 135.82 89.06 REMARK 500 20 ALA A 71 126.01 165.90 REMARK 500 20 PRO A 72 -6.66 -56.91 REMARK 500 20 TRP A 95 27.32 -142.81 REMARK 500 20 PRO A 99 -88.49 -79.33 REMARK 500 21 ALA A 10 66.88 -104.13 REMARK 500 21 VAL A 12 84.09 32.74 REMARK 500 21 ARG A 13 140.77 63.68 REMARK 500 21 ALA A 71 123.57 164.65 REMARK 500 21 PRO A 72 -6.48 -51.76 REMARK 500 21 PRO A 99 -95.59 -76.27 REMARK 500 22 VAL A 4 165.97 50.97 REMARK 500 22 ALA A 7 76.84 61.30 REMARK 500 22 ALA A 10 67.97 -109.08 REMARK 500 22 VAL A 12 91.70 35.21 REMARK 500 22 VAL A 14 119.00 -37.81 REMARK 500 22 LYS A 17 87.47 50.81 REMARK 500 22 ALA A 71 122.06 170.69 REMARK 500 22 PRO A 72 -7.94 -55.34 REMARK 500 22 PRO A 99 -145.33 -61.93 REMARK 500 23 ALA A 7 -177.48 57.50 REMARK 500 23 HIS A 8 -9.72 69.49 REMARK 500 23 ALA A 10 67.62 -117.70 REMARK 500 23 VAL A 12 81.96 31.20 REMARK 500 23 ALA A 71 130.15 162.03 REMARK 500 23 PRO A 72 -6.54 -56.41 REMARK 500 23 PRO A 99 -135.43 -61.48 REMARK 500 24 ALA A 7 -168.40 -163.51 REMARK 500 24 HIS A 8 -9.23 70.56 REMARK 500 24 VAL A 12 80.31 25.18 REMARK 500 24 ALA A 71 125.31 170.12 REMARK 500 24 PRO A 72 -2.80 -59.79 REMARK 500 24 PRO A 99 -139.48 -63.24 REMARK 500 25 PRO A 6 97.54 -68.80 REMARK 500 25 VAL A 11 -72.56 -105.39 REMARK 500 25 VAL A 12 78.66 27.70 REMARK 500 25 CYS A 37 -70.64 -77.14 REMARK 500 25 ASN A 46 113.55 -161.71 REMARK 500 25 ALA A 71 127.69 163.02 REMARK 500 25 PRO A 72 -4.77 -56.92 REMARK 500 25 PRO A 99 -94.23 -69.25 REMARK 500 26 VAL A 2 57.87 35.10 REMARK 500 26 PRO A 6 107.56 -45.99 REMARK 500 26 VAL A 12 80.83 31.70 REMARK 500 26 LYS A 17 108.93 -56.29 REMARK 500 26 ASN A 46 86.74 -150.26 REMARK 500 26 ALA A 71 130.12 167.25 REMARK 500 26 PRO A 72 29.58 -67.97 REMARK 500 26 ARG A 73 140.15 -176.27 REMARK 500 26 PRO A 99 -132.46 -63.77 REMARK 500 27 ALA A 7 48.22 -84.02 REMARK 500 27 VAL A 12 82.88 32.93 REMARK 500 27 ALA A 71 127.57 162.51 REMARK 500 27 PRO A 72 -1.97 -57.13 REMARK 500 27 PRO A 99 -138.46 -62.25 REMARK 500 28 ALA A 7 35.72 -96.54 REMARK 500 28 VAL A 11 -75.12 -68.84 REMARK 500 28 VAL A 12 82.49 25.15 REMARK 500 28 ALA A 71 126.12 164.63 REMARK 500 28 PRO A 72 -5.88 -55.17 REMARK 500 28 PRO A 99 -136.13 -63.36 REMARK 500 29 VAL A 12 95.34 -31.34 REMARK 500 29 LYS A 17 75.64 42.66 REMARK 500 29 CYS A 37 -60.14 -97.51 REMARK 500 29 ALA A 71 130.67 158.26 REMARK 500 29 PRO A 72 -4.45 -56.89 REMARK 500 29 PRO A 99 -140.20 -61.48 REMARK 500 30 HIS A 8 -10.45 71.75 REMARK 500 30 ALA A 10 68.46 -151.06 REMARK 500 30 VAL A 12 76.12 26.24 REMARK 500 30 LYS A 17 64.90 34.73 REMARK 500 30 ALA A 71 122.86 169.14 REMARK 500 30 PRO A 72 -7.02 -55.28 REMARK 500 30 PRO A 99 -94.08 -72.14 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6221 RELATED DB: BMRB REMARK 900 THE SAME PROTEIN
DBREF 1XSF A 1 108 UNP O05594 O05594_MYCTU 255 362
SEQRES 1 A 108 ASN VAL VAL VAL THR PRO ALA HIS GLU ALA VAL VAL ARG SEQRES 2 A 108 VAL GLY THR LYS PRO GLY THR GLU VAL PRO PRO VAL ILE SEQRES 3 A 108 ASP GLY SER ILE TRP ASP ALA ILE ALA GLY CYS GLU ALA SEQRES 4 A 108 GLY GLY ASN TRP ALA ILE ASN THR GLY ASN GLY TYR TYR SEQRES 5 A 108 GLY GLY VAL GLN PHE ASP GLN GLY THR TRP GLU ALA ASN SEQRES 6 A 108 GLY GLY LEU ARG TYR ALA PRO ARG ALA ASP LEU ALA THR SEQRES 7 A 108 ARG GLU GLU GLN ILE ALA VAL ALA GLU VAL THR ARG LEU SEQRES 8 A 108 ARG GLN GLY TRP GLY ALA TRP PRO VAL CYS ALA ALA ARG SEQRES 9 A 108 ALA GLY ALA ARG
HELIX 1 1 ASP A 27 ALA A 39 1 13 HELIX 2 2 ASP A 58 ASN A 65 1 8 HELIX 3 3 GLY A 66 TYR A 70 5 5 HELIX 4 4 THR A 78 GLY A 94 1 17 HELIX 5 5 PRO A 99 GLY A 106 1 8
SSBOND 1 CYS A 37 CYS A 101 1555 1555 2.03
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000