10 20 30 40 50 60 70 80 1XS8 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL TRANSPORT 18-OCT-04 1XS8
TITLE SOLUTION STRUCTURE OF YGGX PROTEIN OF SALMONELLA ENTERICA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPF0269 PROTEIN YGGX; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 602; SOURCE 4 STRAIN: TYPHIMURIUM LT2; SOURCE 5 GENE: YGGX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTYB2
KEYWDS HELIX-TURN-HELIX, METAL TRANSPORT
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR C.QIU,M.P.THORGERSEN,W.M.WESTLER,D.M.DOWNS,J.L.MARKLEY
REVDAT 2 24-FEB-09 1XS8 1 VERSN REVDAT 1 04-JAN-05 1XS8 0
JRNL AUTH C.QIU,M.P.THORGERSEN,W.M.WESTLER,D.M.DOWNS, JRNL AUTH 2 J.L.MARKLEY JRNL TITL SOLUTION STRUTCURE OF YGGX:A PROTEIN INVOLVED IN JRNL TITL 2 PROTECTION OF FE-S CLUSTERS TOWARDS OXIDATION JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2 REMARK 3 AUTHORS : NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 2568 RESTRAINTS, 2410 ARE NOE-DERIVED DISTANCE CONSTRAINTS, REMARK 3 106 DIHEDRAL ANGLE RESTRAINTS,52 DISTANCE RESTRAINTS FROM REMARK 3 HYDROGEN BONDS.
REMARK 4 REMARK 4 1XS8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-NOV-04. REMARK 100 THE RCSB ID CODE IS RCSB030707.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283 REMARK 210 PH : 7.8 REMARK 210 IONIC STRENGTH : 10 MM REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 19.3 MG/ML YGGX, 10 MM REMARK 210 DEUTERATED TRIS, 10% D2O/H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1, NMRPIPE 1.7, FELIX REMARK 210 98, CNS 1.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 18 -87.57 -71.66 REMARK 500 1 TYR A 22 -49.57 -176.00 REMARK 500 1 GLU A 76 -56.55 72.85 REMARK 500 2 PHE A 19 -73.70 -174.42 REMARK 500 2 GLN A 20 84.57 62.11 REMARK 500 2 LEU A 21 -74.71 -93.69 REMARK 500 2 TYR A 85 -162.53 61.84 REMARK 500 3 GLN A 17 -88.36 -65.61 REMARK 500 3 TYR A 22 -53.15 -162.85 REMARK 500 3 GLU A 76 -48.04 72.28 REMARK 500 3 GLU A 83 -52.43 -140.72 REMARK 500 3 PRO A 87 99.27 -69.29 REMARK 500 4 GLN A 17 -152.75 57.87 REMARK 500 4 ASP A 18 -167.90 -113.10 REMARK 500 4 GLN A 20 96.34 -61.41 REMARK 500 4 TYR A 22 -53.70 -174.04 REMARK 500 4 GLU A 76 92.37 62.49 REMARK 500 4 TYR A 85 -171.83 60.03 REMARK 500 5 PHE A 19 115.83 70.19 REMARK 500 5 TYR A 22 -49.00 -160.88 REMARK 500 6 TYR A 22 -56.59 -148.79 REMARK 500 6 GLU A 76 90.13 68.73 REMARK 500 6 ASP A 89 -69.17 73.11 REMARK 500 7 GLN A 17 -174.18 61.40 REMARK 500 7 TYR A 22 -57.30 -151.52 REMARK 500 7 LYS A 54 70.06 54.49 REMARK 500 7 PRO A 87 99.72 -66.86 REMARK 500 7 GLU A 88 -71.78 -104.42 REMARK 500 8 SER A 2 -146.89 -90.91 REMARK 500 8 GLN A 17 -93.11 -60.84 REMARK 500 8 GLN A 20 99.27 -67.89 REMARK 500 8 TYR A 22 -51.65 -169.28 REMARK 500 8 GLU A 76 -28.48 73.11 REMARK 500 8 GLU A 83 -39.02 -140.08 REMARK 500 8 TYR A 85 91.77 56.30 REMARK 500 9 SER A 2 -157.16 59.89 REMARK 500 9 GLN A 17 -167.89 -70.24 REMARK 500 9 ASP A 18 -168.78 -76.57 REMARK 500 9 TYR A 22 -53.08 -154.51 REMARK 500 9 MET A 57 41.49 -92.63 REMARK 500 9 GLU A 83 92.08 62.34 REMARK 500 9 PRO A 87 -169.89 -73.60 REMARK 500 10 GLN A 17 -111.16 -75.49 REMARK 500 10 TYR A 22 -53.63 -153.42 REMARK 500 10 LYS A 54 80.89 61.14 REMARK 500 10 GLU A 83 -31.49 -144.58 REMARK 500 10 PRO A 87 -178.18 -68.99 REMARK 500 10 GLU A 88 77.80 62.51 REMARK 500 11 GLN A 17 -166.12 58.33 REMARK 500 11 ASP A 18 -153.62 -91.27 REMARK 500 11 TYR A 22 -50.83 -156.99 REMARK 500 11 LYS A 54 79.58 53.55 REMARK 500 11 SER A 72 -63.89 -90.51 REMARK 500 11 GLU A 83 -61.66 -154.60 REMARK 500 12 GLN A 17 -111.05 47.14 REMARK 500 12 TYR A 22 -55.45 -160.93 REMARK 500 12 GLU A 76 75.15 58.06 REMARK 500 12 LYS A 90 14.95 -154.25 REMARK 500 13 TYR A 22 -53.05 -159.06 REMARK 500 13 LYS A 54 73.44 57.82 REMARK 500 13 GLU A 76 101.09 65.05 REMARK 500 13 GLU A 83 -39.97 -150.80 REMARK 500 13 ASP A 89 87.45 65.04 REMARK 500 14 ASP A 18 -94.29 -73.71 REMARK 500 14 TYR A 22 -54.54 -168.28 REMARK 500 14 LYS A 54 77.39 51.33 REMARK 500 14 GLU A 83 -51.95 -166.57 REMARK 500 14 TYR A 85 -159.25 58.14 REMARK 500 14 GLU A 88 -75.06 -114.71 REMARK 500 15 SER A 2 -177.54 66.12 REMARK 500 15 GLN A 17 -151.94 43.75 REMARK 500 15 LEU A 21 -69.62 -101.84 REMARK 500 15 TYR A 22 -44.43 -140.71 REMARK 500 15 GLU A 83 33.34 -157.66 REMARK 500 15 ASP A 89 -64.65 -99.31 REMARK 500 16 ASP A 18 -163.60 -177.18 REMARK 500 16 TYR A 22 -49.63 -133.83 REMARK 500 16 LYS A 54 67.38 60.99 REMARK 500 16 GLU A 76 77.60 53.03 REMARK 500 17 ASP A 18 -163.38 -170.29 REMARK 500 17 PHE A 19 -163.27 -118.13 REMARK 500 17 TYR A 22 -48.85 -146.52 REMARK 500 17 MET A 57 40.43 -75.90 REMARK 500 17 GLU A 76 97.51 61.89 REMARK 500 17 GLU A 83 84.00 64.19 REMARK 500 17 PRO A 87 -73.96 -84.17 REMARK 500 18 SER A 2 95.79 65.30 REMARK 500 18 GLN A 17 -161.38 -76.09 REMARK 500 18 ASP A 18 -168.62 -73.78 REMARK 500 18 PHE A 19 -92.16 -100.37 REMARK 500 18 LEU A 21 -73.32 -104.02 REMARK 500 18 GLU A 76 90.31 60.74 REMARK 500 18 GLU A 83 18.38 58.18 REMARK 500 18 LYS A 90 99.19 -69.77 REMARK 500 19 LEU A 21 -84.61 -111.85 REMARK 500 19 LYS A 54 78.76 57.50 REMARK 500 19 GLU A 76 -75.56 70.67 REMARK 500 19 ASP A 89 -70.49 -51.90 REMARK 500 20 ASP A 18 -158.40 -162.34 REMARK 500 20 TYR A 22 -33.74 -149.37 REMARK 500 20 GLU A 76 -55.89 72.79 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1XS8 A 2 91 UNP P67617 FETP_SALTY 1 90
SEQADV 1XS8 MET A 1 UNP P67617 INITIATING METHIONINE
SEQRES 1 A 91 MET SER ARG THR ILE PHE CYS THR TYR LEU GLN ARG ASP SEQRES 2 A 91 ALA GLU GLY GLN ASP PHE GLN LEU TYR PRO GLY GLU LEU SEQRES 3 A 91 GLY LYS ARG ILE TYR ASN GLU ILE SER LYS ASP ALA TRP SEQRES 4 A 91 ALA GLN TRP GLN HIS LYS GLN THR MET LEU ILE ASN GLU SEQRES 5 A 91 LYS LYS LEU ASN MET MET ASN ALA GLU HIS ARG LYS LEU SEQRES 6 A 91 LEU GLU GLN GLU MET VAL SER PHE LEU PHE GLU GLY LYS SEQRES 7 A 91 ASP VAL HIS ILE GLU GLY TYR THR PRO GLU ASP LYS LYS
HELIX 1 1 GLY A 24 ASN A 32 1 9 HELIX 2 2 SER A 35 LYS A 54 1 20 HELIX 3 3 ASN A 59 PHE A 75 1 17
SHEET 1 A 2 THR A 4 PHE A 6 0 SHEET 2 A 2 ASP A 13 GLU A 15 -1 O ALA A 14 N ILE A 5
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000