10 20 30 40 50 60 70 80 1XOX - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER APOPTOSIS 07-OCT-04 1XOX
TITLE SOLUTION STRUCTURE OF HUMAN SURVIVIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOPTOSIS INHIBITOR SURVIVIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-117; COMPND 5 SYNONYM: BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 5; COMPND 6 APOPTOSIS INHIBITOR 4; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BIRC5, API4, IAP4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B
KEYWDS BIR DOMAIN; APOPTOSIS
EXPDTA SOLUTION NMR
MDLTYP MINIMIZED AVERAGE
AUTHOR C.SUN,D.NETTESHEIM,Z.LIU,E.T.OLEJNICZAK
REVDAT 2 24-FEB-09 1XOX 1 VERSN REVDAT 1 18-JAN-05 1XOX 0
JRNL AUTH C.SUN,D.NETTESHEIM,Z.LIU,E.T.OLEJNICZAK JRNL TITL SOLUTION STRUCTURE OF HUMAN SURVIVIN AND ITS JRNL TITL 2 BINDING INTERFACE WITH SMAC/DIABLO JRNL REF BIOCHEMISTRY V. 44 11 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 15628841 JRNL DOI 10.1021/BI0485171
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNX 2000.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES WERE CALCULATED USING REMARK 3 1394 INTRA-MONOMER NOE CONSTRAINTS, THIRTY HYDROGEN BOND REMARK 3 RESTRAINTS DERIVED FROM AN ANALYSIS OF AMIDE EXCHANGE RATES REMARK 3 AND FIFTY-SIX TORSIONAL RESTRAINTS FROM AN ANALYSIS OF THE REMARK 3 BACKBONE CHEMICAL SHIFTS. DIMER STRUCTURES WERE CALCULATED REMARK 3 USING ADDITIONAL INTER-MONOMER NOE CONSTRAINTS.
REMARK 4 REMARK 4 1XOX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-04. REMARK 100 THE RCSB ID CODE IS RCSB030595.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 50 MM PHOSPHATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY, 3D 12C REMARK 210 FILTERED 13C-SEP NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 3D NMR REMARK 210 TECHNIQUES
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 4 177.26 -51.11 REMARK 500 ALA A 9 -81.52 -44.22 REMARK 500 TRP A 10 60.23 -107.84 REMARK 500 ASN A 24 -73.98 -122.53 REMARK 500 TRP A 25 101.85 56.17 REMARK 500 PHE A 27 83.47 -68.28 REMARK 500 LEU A 28 -79.01 -115.53 REMARK 500 CYS A 46 60.46 -162.59 REMARK 500 ASP A 53 47.51 -92.32 REMARK 500 CYS A 60 -39.08 -179.28 REMARK 500 PHE A 61 116.60 70.66 REMARK 500 LYS A 62 97.81 -174.50 REMARK 500 PRO A 69 55.81 -68.75 REMARK 500 ASP A 70 41.78 168.69 REMARK 500 SER A 81 144.06 -177.16 REMARK 500 SER A 82 37.92 -96.75 REMARK 500 GLN A 92 158.80 -48.06 REMARK 500 PRO B 4 177.28 -51.11 REMARK 500 ALA B 9 -81.48 -44.29 REMARK 500 TRP B 10 60.15 -107.83 REMARK 500 ASN B 24 -73.98 -122.51 REMARK 500 TRP B 25 101.84 56.19 REMARK 500 PHE B 27 83.52 -68.33 REMARK 500 LEU B 28 -79.00 -115.56 REMARK 500 CYS B 46 60.42 -162.62 REMARK 500 ASP B 53 47.44 -92.26 REMARK 500 CYS B 60 -39.12 -179.30 REMARK 500 PHE B 61 116.56 70.69 REMARK 500 LYS B 62 97.69 -174.45 REMARK 500 PRO B 69 55.83 -68.75 REMARK 500 ASP B 70 41.79 168.73 REMARK 500 SER B 81 144.00 -177.20 REMARK 500 SER B 82 37.97 -96.73 REMARK 500 GLN B 92 158.78 -48.12 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 999 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 57 SG REMARK 620 2 CYS A 84 SG 110.0 REMARK 620 3 HIS A 77 ND1 108.5 109.6 REMARK 620 4 CYS A 60 SG 108.5 109.6 110.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 998 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 84 SG REMARK 620 2 HIS B 77 ND1 109.6 REMARK 620 3 CYS B 60 SG 109.6 110.6 REMARK 620 4 CYS B 57 SG 110.0 108.5 108.5 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 998 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 999
DBREF 1XOX A 1 117 UNP O15392 BIRC5_HUMAN 1 117 DBREF 1XOX B 1 117 UNP O15392 BIRC5_HUMAN 1 117
SEQRES 1 A 117 MET GLY ALA PRO THR LEU PRO PRO ALA TRP GLN PRO PHE SEQRES 2 A 117 LEU LYS ASP HIS ARG ILE SER THR PHE LYS ASN TRP PRO SEQRES 3 A 117 PHE LEU GLU GLY CYS ALA CYS THR PRO GLU ARG MET ALA SEQRES 4 A 117 GLU ALA GLY PHE ILE HIS CYS PRO THR GLU ASN GLU PRO SEQRES 5 A 117 ASP LEU ALA GLN CYS PHE PHE CYS PHE LYS GLU LEU GLU SEQRES 6 A 117 GLY TRP GLU PRO ASP ASP ASP PRO ILE GLU GLU HIS LYS SEQRES 7 A 117 LYS HIS SER SER GLY CYS ALA PHE LEU SER VAL LYS LYS SEQRES 8 A 117 GLN PHE GLU GLU LEU THR LEU GLY GLU PHE LEU LYS LEU SEQRES 9 A 117 ASP ARG GLU ARG ALA LYS ASN LYS ILE ALA LYS GLU THR SEQRES 1 B 117 MET GLY ALA PRO THR LEU PRO PRO ALA TRP GLN PRO PHE SEQRES 2 B 117 LEU LYS ASP HIS ARG ILE SER THR PHE LYS ASN TRP PRO SEQRES 3 B 117 PHE LEU GLU GLY CYS ALA CYS THR PRO GLU ARG MET ALA SEQRES 4 B 117 GLU ALA GLY PHE ILE HIS CYS PRO THR GLU ASN GLU PRO SEQRES 5 B 117 ASP LEU ALA GLN CYS PHE PHE CYS PHE LYS GLU LEU GLU SEQRES 6 B 117 GLY TRP GLU PRO ASP ASP ASP PRO ILE GLU GLU HIS LYS SEQRES 7 B 117 LYS HIS SER SER GLY CYS ALA PHE LEU SER VAL LYS LYS SEQRES 8 B 117 GLN PHE GLU GLU LEU THR LEU GLY GLU PHE LEU LYS LEU SEQRES 9 B 117 ASP ARG GLU ARG ALA LYS ASN LYS ILE ALA LYS GLU THR
HET ZN B 998 1 HET ZN A 999 1
HETNAM ZN ZINC ION
FORMUL 3 ZN 2(ZN 2+)
HELIX 1 1 LEU A 14 THR A 21 1 8 HELIX 2 2 THR A 34 GLU A 40 1 7 HELIX 3 3 ASP A 72 SER A 81 1 10 HELIX 4 4 THR A 97 THR A 117 1 21 HELIX 5 5 LEU B 14 THR B 21 1 8 HELIX 6 6 THR B 34 GLU B 40 1 7 HELIX 7 7 ASP B 72 SER B 81 1 10 HELIX 8 8 THR B 97 THR B 117 1 21
SHEET 1 A 2 PHE A 43 HIS A 45 0 SHEET 2 A 2 ALA A 55 CYS A 57 -1 O GLN A 56 N ILE A 44 SHEET 1 B 2 PHE B 43 HIS B 45 0 SHEET 2 B 2 ALA B 55 CYS B 57 -1 O GLN B 56 N ILE B 44
LINK ZN ZN A 999 SG CYS A 57 1555 1555 2.10 LINK ZN ZN A 999 SG CYS A 84 1555 1555 2.10 LINK ZN ZN A 999 ND1 HIS A 77 1555 1555 2.20 LINK ZN ZN A 999 SG CYS A 60 1555 1555 2.10 LINK ZN ZN B 998 SG CYS B 84 1555 1555 2.10 LINK ZN ZN B 998 ND1 HIS B 77 1555 1555 2.20 LINK ZN ZN B 998 SG CYS B 60 1555 1555 2.10 LINK ZN ZN B 998 SG CYS B 57 1555 1555 2.10
SITE 1 AC1 5 CYS B 57 PHE B 58 CYS B 60 HIS B 77 SITE 2 AC1 5 CYS B 84 SITE 1 AC2 5 CYS A 57 PHE A 58 CYS A 60 HIS A 77 SITE 2 AC2 5 CYS A 84
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000