10 20 30 40 50 60 70 80 1XHS - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 20-SEP-04 1XHS
TITLE SOLUTION NMR STRUCTURE OF PROTEIN YTFP FROM ESCHERICHIA TITLE 2 COLI. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TITLE 3 ER111.
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL UPF0131 PROTEIN YTFP; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: YTFP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21MGK; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET21; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: ER111-21
KEYWDS ER111, NMR STRUCTURE, AUTOSTRUCTURE, NORTHEAST STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, NESG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI, STRUCTURAL GENOMICS, UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR J.M.ARAMINI,Y.J.HUANG,G.V.T.SWAPNA,R.K.PARANJI,R.XIAO, AUTHOR 2 R.SHASTRY,T.B.ACTON,J.R.CORT,M.A.KENNEDY,G.T.MONTELIONE, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG)
REVDAT 3 24-FEB-09 1XHS 1 VERSN REVDAT 2 30-OCT-07 1XHS 1 JRNL REVDAT 1 04-JAN-05 1XHS 0
JRNL AUTH J.M.ARAMINI,Y.J.HUANG,G.V.SWAPNA,J.R.CORT, JRNL AUTH 2 P.K.RAJAN,R.XIAO,R.SHASTRY,T.B.ACTON,J.LIU,B.ROST, JRNL AUTH 3 M.A.KENNEDY,G.T.MONTELIONE JRNL TITL SOLUTION NMR STRUCTURE OF ESCHERICHIA COLI YTFP JRNL TITL 2 EXPANDS THE STRUCTURAL COVERAGE OF THE UPF0131 JRNL TITL 3 PROTEIN DOMAIN FAMILY. JRNL REF PROTEINS V. 68 789 2007 JRNL REFN ISSN 0887-3585 JRNL PMID 17523190 JRNL DOI 10.1002/PROT.21450
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AUTOSTRUCTURE 2.1.0, XPLOR-NIH 2.0.6, CNS 1.1 REMARK 3 AUTHORS : HUANG, MONTELIONE (AUTOSTRUCTURE), SCHWIETERS, REMARK 3 CLORE (XPLOR-NIH), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 1717 CONFORMATIONALLY-RESTRICTING NOE-DERIVED DISTANCE REMARK 3 CONSTRAINTS, 211 DIHEDRAL ANGLE CONSTRAINTS, AND 68 HYDROGEN REMARK 3 BOND CONSTRAINTS (17.2 CONSTRAINTS PER RESIDUE; 6.9 LONG-RANGE REMARK 3 CONSTRAINTS PER RESIDUE). STRUCTURE DETERMINATION WAS REMARK 3 PERFORMED ITERATIVELY USING AUTOSTRUCTURE (XPLOR). THE 10 REMARK 3 LOWEST ENERGY STRUCTURES WERE FURTHER REFINED BY RESTRAINED REMARK 3 MOLECULAR DYNAMICS/ENERGY MINIMIZATION IN EXPLICIT WATER (CNS).
REMARK 4 REMARK 4 1XHS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-DEC-04. REMARK 100 THE RCSB ID CODE IS RCSB030377.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 100 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.3 MM ER111 U-13C,15N 20MM REMARK 210 NH4OAC, 5MM CACL2, 10MM DTT, REMARK 210 0.02% NAN3, 5% D2O, 95% H2O; REMARK 210 1.3 MM ER111 U-13C,15N 20MM REMARK 210 NH4OAC, 5MM CACL2, 10MM DTT, REMARK 210 0.02% NAN3,100% D2O; 1.1 MM REMARK 210 ER111 U-15N,5% 13C 20MM REMARK 210 NH4OAC, 5MM CACL2, 10MM DTT, REMARK 210 0.02% NAN3, 5% D2O, 95% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY, 4D_13C- REMARK 210 SEPARATED_NOESY, HNHA, HIGH REMARK 210 RESOLUTION CH-HSQC, BACKBONE REMARK 210 TR EXPTS, TOCSYS, HCCH COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ, 750 MHZ, REMARK 210 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, PSVS 1.0, NMRPIPE REMARK 210 2.3, SPARKY 3.91, AUTOASSIGN REMARK 210 1.14, HYPER 3.2, PDBSTAT 3.27 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 56 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. AUTOMATIC BACKBONE ASSIGNMENTS WERE MADE USING REMARK 210 AUTOASSIGN. MANUAL SIDE CHAIN ASSIGNMENTS. AUTOMATIC NOESY REMARK 210 ASSIGNMENTS AS WELL AS DISTANCE AND HYDROGEN BOND CONSTRAINTS REMARK 210 WERE DETERMINED USING AUTOSTRUCTURE. DIHEDRAL ANGLE REMARK 210 CONSTRAINTS WERE DETERMINED USING HYPER AND TALOS.COMPLETENESS REMARK 210 OF NMR ASSIGNMENTS: BACKBONE, 97%; SIDE CHAIN, 91%; REMARK 210 STEREOSPECIFIC METHYL, 100%. FINAL STRUCTURE QUALITY FACTORS REMARK 210 FOR THE ENSEMBLE, WHERE ORDERED RESIDUES [S(PHI) + S(PSI) > REMARK 210 1.8] COMPRISE 1-5,9-10,17-18,23-38,41-70,76-85,88-93,101-104, REMARK 210 106-108: (A) RMSD FOR ORDERED RESIDUES: BB, 0.7; HEAVY ATOM, REMARK 210 1.2. (B) RAMACHANDRAN STATISTICS FOR ORDERED RESIDUES: MOST REMARK 210 FAVORED: 89.9%; ADDITIONALLY ALLOWED: 10.1%; GENEROUSLY REMARK 210 ALLOWED, 0.0%; DISALLOWED, 0.0% (C) PROCHECK SCORES FOR REMARK 210 ORDERED RESIDUES (RAW/Z-): BB, -0.53/-1.77; ALL, -0.49/-2.90. REMARK 210 (D) MAGE MOLPROBITY CLASH SCORE (RAW/Z-): 28.47/-3.36. (E) RPF REMARK 210 SCORES FOR GOODNESS OF FIT TO NOESY DATA: F-MEASURE, 0.916; REMARK 210 RECALL, 0.962; PRECISION, 0.874; DP-SCORE, 0.791.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 LEU A 114 REMARK 465 GLU A 115 REMARK 465 HIS A 116 REMARK 465 HIS A 117 REMARK 465 HIS A 118 REMARK 465 HIS A 119 REMARK 465 HIS A 120 REMARK 465 HIS A 121
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 8 152.01 61.68 REMARK 500 1 HIS A 11 -157.92 44.54 REMARK 500 1 SER A 16 -51.16 -178.55 REMARK 500 1 THR A 20 -66.47 -96.88 REMARK 500 1 HIS A 40 -82.99 -104.67 REMARK 500 1 PRO A 96 128.99 -28.35 REMARK 500 1 LEU A 109 -74.20 -99.29 REMARK 500 1 ASP A 110 -48.25 66.51 REMARK 500 2 SER A 8 89.92 -69.61 REMARK 500 2 ASN A 21 17.95 51.54 REMARK 500 2 THR A 71 -19.16 98.14 REMARK 500 2 ARG A 72 -83.64 62.19 REMARK 500 2 ARG A 95 167.91 72.62 REMARK 500 2 ASP A 98 16.18 -64.93 REMARK 500 2 ASP A 110 2.57 57.02 REMARK 500 3 TYR A 6 -43.68 -135.58 REMARK 500 3 SER A 8 96.57 50.46 REMARK 500 3 HIS A 11 -84.60 59.25 REMARK 500 3 LYS A 12 115.68 174.42 REMARK 500 3 GLN A 13 -156.05 -126.73 REMARK 500 3 ASN A 15 -35.30 -136.92 REMARK 500 3 PHE A 28 86.37 -151.82 REMARK 500 3 ASN A 32 33.38 71.01 REMARK 500 3 LEU A 38 16.75 -140.98 REMARK 500 3 TYR A 41 110.88 -167.65 REMARK 500 3 THR A 71 -67.59 -106.61 REMARK 500 3 ARG A 95 -37.46 -162.13 REMARK 500 3 ASP A 98 24.15 -64.48 REMARK 500 3 LEU A 100 -170.00 61.89 REMARK 500 4 SER A 8 103.30 51.36 REMARK 500 4 LEU A 9 17.09 -66.54 REMARK 500 4 HIS A 11 106.17 46.50 REMARK 500 4 ASN A 15 173.02 72.65 REMARK 500 4 THR A 20 46.74 -85.93 REMARK 500 4 ASN A 21 -19.40 163.57 REMARK 500 4 ALA A 22 105.47 -50.00 REMARK 500 4 ASN A 32 36.33 77.03 REMARK 500 4 ARG A 95 169.38 70.91 REMARK 500 4 ASP A 110 -107.54 55.96 REMARK 500 5 GLN A 13 -166.74 -173.27 REMARK 500 5 ASN A 15 -69.82 -136.20 REMARK 500 5 SER A 16 -43.55 -164.41 REMARK 500 5 PHE A 28 87.05 -156.71 REMARK 500 5 THR A 71 124.54 98.40 REMARK 500 5 PRO A 96 121.78 -39.25 REMARK 500 5 ASP A 98 96.64 -60.56 REMARK 500 5 ASP A 110 -79.62 59.68 REMARK 500 5 ASP A 112 96.69 57.57 REMARK 500 6 HIS A 11 75.92 41.11 REMARK 500 6 LYS A 12 -95.41 67.48 REMARK 500 6 GLN A 13 143.28 66.00 REMARK 500 6 ASN A 15 -28.13 -148.38 REMARK 500 6 ARG A 72 -90.77 52.10 REMARK 500 6 GLN A 94 -166.51 -108.03 REMARK 500 6 ARG A 95 -177.43 66.92 REMARK 500 6 PRO A 96 100.58 -54.73 REMARK 500 7 SER A 8 -48.04 62.81 REMARK 500 7 GLN A 13 -55.03 -140.29 REMARK 500 7 MET A 19 -100.84 -108.40 REMARK 500 7 THR A 20 -78.29 43.71 REMARK 500 7 ASN A 32 33.97 70.72 REMARK 500 7 SER A 87 133.17 -172.86 REMARK 500 7 GLU A 104 24.75 -67.22 REMARK 500 7 SER A 105 15.90 -161.27 REMARK 500 7 ARG A 111 -55.24 -155.88 REMARK 500 7 ASP A 112 -124.61 -126.66 REMARK 500 8 ARG A 10 -82.10 -46.56 REMARK 500 8 HIS A 11 -99.78 59.17 REMARK 500 8 ASN A 15 -26.42 -159.26 REMARK 500 8 THR A 20 -43.80 -148.21 REMARK 500 8 HIS A 40 -54.58 70.72 REMARK 500 8 THR A 71 -67.56 -106.74 REMARK 500 8 ARG A 72 -68.86 60.57 REMARK 500 8 ASP A 98 -70.73 -42.84 REMARK 500 8 GLU A 104 24.56 -66.78 REMARK 500 8 SER A 105 17.45 -160.92 REMARK 500 8 ARG A 111 -107.92 -147.96 REMARK 500 9 TYR A 6 -81.66 -98.10 REMARK 500 9 ARG A 10 6.96 -66.64 REMARK 500 9 GLN A 13 115.80 -175.33 REMARK 500 9 MET A 19 81.49 158.92 REMARK 500 9 ALA A 22 -162.12 43.06 REMARK 500 9 ASN A 32 32.04 73.17 REMARK 500 9 HIS A 40 -72.14 -111.67 REMARK 500 9 TYR A 93 102.95 -59.27 REMARK 500 9 LEU A 109 79.97 -103.69 REMARK 500 9 ASP A 110 -86.45 -68.93 REMARK 500 9 ARG A 111 141.37 72.54 REMARK 500 10 SER A 16 -54.13 -175.64 REMARK 500 10 HIS A 17 10.60 -69.93 REMARK 500 10 THR A 20 -150.75 -81.38 REMARK 500 10 ASN A 21 -76.48 -140.38 REMARK 500 10 ALA A 22 120.50 177.58 REMARK 500 10 THR A 71 -83.54 -95.63 REMARK 500 10 ARG A 72 -75.75 55.61 REMARK 500 10 PRO A 84 1.21 -64.69 REMARK 500 10 ARG A 95 -80.51 -120.85 REMARK 500 10 PRO A 96 -86.92 -99.05 REMARK 500 10 VAL A 97 77.11 54.20 REMARK 500 10 ASP A 98 113.82 -178.46 REMARK 500 10 GLU A 104 24.01 -67.37 REMARK 500 10 SER A 105 -17.28 -163.89 REMARK 500 10 ASP A 110 -51.50 69.33 REMARK 500 10 ASP A 112 -131.30 -108.21 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ER111 RELATED DB: TARGETDB
DBREF 1XHS A 1 113 UNP P39323 YTFP_ECOLI 1 113
SEQADV 1XHS LEU A 114 UNP P39323 EXPRESSION TAG SEQADV 1XHS GLU A 115 UNP P39323 EXPRESSION TAG SEQADV 1XHS HIS A 116 UNP P39323 EXPRESSION TAG SEQADV 1XHS HIS A 117 UNP P39323 EXPRESSION TAG SEQADV 1XHS HIS A 118 UNP P39323 EXPRESSION TAG SEQADV 1XHS HIS A 119 UNP P39323 EXPRESSION TAG SEQADV 1XHS HIS A 120 UNP P39323 EXPRESSION TAG SEQADV 1XHS HIS A 121 UNP P39323 EXPRESSION TAG
SEQRES 1 A 121 MET ARG ILE PHE VAL TYR GLY SER LEU ARG HIS LYS GLN SEQRES 2 A 121 GLY ASN SER HIS TRP MET THR ASN ALA GLN LEU LEU GLY SEQRES 3 A 121 ASP PHE SER ILE ASP ASN TYR GLN LEU TYR SER LEU GLY SEQRES 4 A 121 HIS TYR PRO GLY ALA VAL PRO GLY ASN GLY THR VAL HIS SEQRES 5 A 121 GLY GLU VAL TYR ARG ILE ASP ASN ALA THR LEU ALA GLU SEQRES 6 A 121 LEU ASP ALA LEU ARG THR ARG GLY GLY GLU TYR ALA ARG SEQRES 7 A 121 GLN LEU ILE GLN THR PRO TYR GLY SER ALA TRP MET TYR SEQRES 8 A 121 VAL TYR GLN ARG PRO VAL ASP GLY LEU LYS LEU ILE GLU SEQRES 9 A 121 SER GLY ASP TRP LEU ASP ARG ASP LYS LEU GLU HIS HIS SEQRES 10 A 121 HIS HIS HIS HIS
HELIX 1 1 SER A 16 ASN A 21 1 6 HELIX 2 2 ASP A 59 THR A 71 1 13
SHEET 1 A 3 ARG A 2 VAL A 5 0 SHEET 2 A 3 VAL A 51 ARG A 57 -1 O GLU A 54 N VAL A 5 SHEET 3 A 3 GLN A 23 ILE A 30 -1 N ILE A 30 O VAL A 51 SHEET 1 B 3 PRO A 42 PRO A 46 0 SHEET 2 B 3 TYR A 33 SER A 37 -1 N TYR A 36 O GLY A 43 SHEET 3 B 3 LYS A 101 ILE A 103 -1 O ILE A 103 N LEU A 35 SHEET 1 C 2 TYR A 76 THR A 83 0 SHEET 2 C 2 GLY A 86 TYR A 93 -1 O MET A 90 N GLN A 79
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000