10 20 30 40 50 60 70 80 1X6H - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA BINDING PROTEIN 17-MAY-05 1X6H
TITLE SOLUTION STRUCTURES OF THE C2H2 TYPE ZINC FINGER DOMAIN OF TITLE 2 HUMAN TRANSCRIPTIONAL REPRESSOR CTCF
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REPRESSOR CTCF; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C2H2 TYPE ZINC FINGER DOMAIN; COMPND 5 SYNONYM: CCCTC-BINDING FACTOR, CTCFL PARALOG, 11-ZINC COMPND 6 FINGER PROTEIN; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTCF; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040719-09; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS ZINC FINGER PROTEIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, DNA KEYWDS 4 BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR M.SATO,K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 1X6H 1 VERSN REVDAT 1 17-NOV-05 1X6H 0
JRNL AUTH M.SATO,K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURES OF THE C2H2 TYPE ZINC FINGER JRNL TITL 2 DOMAIN OF HUMAN TRANSCRIPTIONAL REPRESSOR CTCF JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1X6H COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024439.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5MM C2H2 TYPE ZINC FINGER REMARK 210 DOMAIN U-15N,13C; 20MM D-TRIS REMARK 210 HCL; 100MM NACL; 5MM D-DTT; REMARK 210 0.02% NAN3; 10UM ZNCL2; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 42.10 35.05 REMARK 500 1 HIS A 10 107.13 -163.76 REMARK 500 1 GLU A 13 105.32 -41.69 REMARK 500 1 LYS A 14 106.90 -40.94 REMARK 500 1 ASP A 22 49.32 -97.55 REMARK 500 1 ARG A 37 -61.39 -97.08 REMARK 500 1 PRO A 41 1.57 -69.75 REMARK 500 1 CYS A 50 174.70 -54.04 REMARK 500 1 SER A 81 136.45 -170.36 REMARK 500 2 SER A 5 43.33 34.32 REMARK 500 2 GLU A 13 108.89 -167.01 REMARK 500 2 ASP A 22 45.62 -96.16 REMARK 500 2 ARG A 37 -62.60 -96.10 REMARK 500 2 PRO A 41 2.08 -69.78 REMARK 500 2 SER A 81 118.97 -35.99 REMARK 500 3 THR A 11 41.99 -100.60 REMARK 500 3 LYS A 14 106.56 -49.69 REMARK 500 3 ASP A 22 53.68 -103.04 REMARK 500 3 ARG A 37 -62.32 -97.07 REMARK 500 3 PRO A 83 -177.01 -69.80 REMARK 500 4 SER A 2 112.91 -168.29 REMARK 500 4 ARG A 37 -62.11 -97.10 REMARK 500 4 PRO A 41 2.35 -69.82 REMARK 500 4 GLU A 77 -61.15 -126.80 REMARK 500 4 ASN A 80 139.25 -174.72 REMARK 500 5 HIS A 10 42.01 -99.67 REMARK 500 5 LYS A 14 102.45 -41.79 REMARK 500 5 ASP A 22 51.07 -97.43 REMARK 500 5 ARG A 37 -62.38 -96.81 REMARK 500 5 PRO A 41 2.97 -69.73 REMARK 500 5 CYS A 50 174.07 -50.60 REMARK 500 6 ASP A 22 47.58 -102.98 REMARK 500 6 ARG A 37 -62.53 -96.63 REMARK 500 6 PRO A 41 2.87 -69.70 REMARK 500 6 PRO A 73 95.61 -69.75 REMARK 500 6 GLU A 77 -42.39 -133.42 REMARK 500 7 ASP A 22 52.32 -98.30 REMARK 500 7 ARG A 37 -61.51 -97.03 REMARK 500 7 CYS A 50 168.22 -45.72 REMARK 500 7 ALA A 71 -35.80 -134.17 REMARK 500 7 ASP A 74 41.35 36.51 REMARK 500 7 SER A 81 141.84 -34.74 REMARK 500 8 HIS A 10 131.77 -37.14 REMARK 500 8 ASP A 22 43.57 -99.14 REMARK 500 8 ARG A 37 -60.90 -96.47 REMARK 500 8 CYS A 50 172.01 -54.45 REMARK 500 8 THR A 58 33.25 -88.68 REMARK 500 9 ASP A 22 51.80 -100.86 REMARK 500 9 ARG A 37 -62.36 -97.22 REMARK 500 9 PRO A 41 1.19 -69.81 REMARK 500 9 ASP A 74 -55.05 -132.51 REMARK 500 10 LYS A 14 106.81 -50.55 REMARK 500 10 ASP A 22 51.80 -98.29 REMARK 500 10 ARG A 37 -61.02 -97.23 REMARK 500 10 GLU A 79 131.80 -174.47 REMARK 500 11 SER A 5 155.55 -44.00 REMARK 500 11 SER A 6 47.36 -81.45 REMARK 500 11 ARG A 8 42.06 -105.27 REMARK 500 11 ASP A 22 39.29 -97.27 REMARK 500 11 ARG A 37 -62.69 -96.95 REMARK 500 11 PRO A 41 4.60 -69.77 REMARK 500 11 ALA A 71 -42.13 -132.44 REMARK 500 11 PRO A 73 7.37 -69.82 REMARK 500 12 SER A 5 84.14 -64.08 REMARK 500 12 SER A 6 152.80 -38.27 REMARK 500 12 HIS A 10 125.35 -171.53 REMARK 500 12 ARG A 37 -62.29 -96.76 REMARK 500 12 CYS A 50 174.07 -53.34 REMARK 500 12 PRO A 83 -179.50 -69.82 REMARK 500 13 ARG A 8 104.57 -55.05 REMARK 500 13 THR A 11 114.42 -35.09 REMARK 500 13 ASP A 22 54.16 -103.58 REMARK 500 13 ARG A 37 -61.10 -97.11 REMARK 500 13 PRO A 41 2.85 -69.80 REMARK 500 13 PRO A 73 89.76 -69.80 REMARK 500 13 GLU A 77 118.49 -174.90 REMARK 500 13 SER A 81 43.97 37.77 REMARK 500 14 ASP A 22 50.74 -99.69 REMARK 500 14 ARG A 37 -62.43 -97.11 REMARK 500 14 PRO A 41 4.03 -69.79 REMARK 500 14 CYS A 50 174.76 -49.16 REMARK 500 14 PRO A 73 88.39 -69.77 REMARK 500 14 SER A 84 114.16 -163.62 REMARK 500 15 SER A 3 88.04 -68.35 REMARK 500 15 SER A 6 101.66 -45.88 REMARK 500 15 ASP A 22 50.55 -99.00 REMARK 500 15 ARG A 37 -61.17 -94.47 REMARK 500 15 ALA A 71 -40.85 -132.39 REMARK 500 15 ASP A 74 127.86 -174.25 REMARK 500 16 ASP A 22 49.47 -106.08 REMARK 500 16 ARG A 37 -62.93 -98.43 REMARK 500 16 PRO A 41 6.32 -69.75 REMARK 500 16 VAL A 44 108.58 -162.27 REMARK 500 16 ASN A 61 -37.17 -36.46 REMARK 500 16 ASP A 74 125.42 -173.81 REMARK 500 16 PRO A 83 -168.58 -69.82 REMARK 500 17 HIS A 10 38.12 -92.05 REMARK 500 17 ASP A 22 33.19 -99.95 REMARK 500 17 ARG A 37 -63.19 -98.33 REMARK 500 17 PRO A 41 5.95 -69.83 REMARK 500 17 PRO A 73 -179.71 -69.73 REMARK 500 17 VAL A 76 128.63 -171.86 REMARK 500 17 PRO A 83 98.29 -69.73 REMARK 500 18 SER A 6 42.00 -82.45 REMARK 500 18 GLU A 13 137.35 -170.63 REMARK 500 18 ASP A 22 31.43 -91.58 REMARK 500 18 ARG A 37 -61.98 -94.09 REMARK 500 18 PRO A 41 2.54 -69.77 REMARK 500 18 CYS A 50 175.86 -51.32 REMARK 500 18 VAL A 76 -56.30 -132.12 REMARK 500 19 SER A 2 47.55 -82.00 REMARK 500 19 ASP A 22 48.54 -97.22 REMARK 500 19 ARG A 37 -62.85 -97.16 REMARK 500 19 PRO A 41 3.57 -69.78 REMARK 500 19 VAL A 44 112.03 -160.93 REMARK 500 19 VAL A 76 135.41 -173.61 REMARK 500 19 ASN A 80 128.11 -174.82 REMARK 500 20 THR A 9 43.79 28.76 REMARK 500 20 HIS A 10 -63.65 -134.35 REMARK 500 20 ASP A 22 48.90 -99.26 REMARK 500 20 GLN A 29 -37.74 -38.76 REMARK 500 20 ARG A 37 -62.11 -97.11 REMARK 500 20 PRO A 41 2.99 -69.70 REMARK 500 20 CYS A 50 176.80 -52.10 REMARK 500 20 SER A 84 114.40 -173.04 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 18 SG REMARK 620 2 CYS A 21 SG 110.5 REMARK 620 3 HIS A 34 NE2 115.5 86.8 REMARK 620 4 HIS A 39 NE2 108.8 117.4 116.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 50 SG REMARK 620 2 CYS A 53 SG 117.8 REMARK 620 3 HIS A 66 NE2 98.3 113.6 REMARK 620 4 CYS A 70 SG 117.7 112.2 93.4 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001000882.1 RELATED DB: TARGETDB
DBREF 1X6H A 8 80 UNP P49711 CTCF_HUMAN 515 587
SEQADV 1X6H GLY A 1 UNP P49711 CLONING ARTIFACT SEQADV 1X6H SER A 2 UNP P49711 CLONING ARTIFACT SEQADV 1X6H SER A 3 UNP P49711 CLONING ARTIFACT SEQADV 1X6H GLY A 4 UNP P49711 CLONING ARTIFACT SEQADV 1X6H SER A 5 UNP P49711 CLONING ARTIFACT SEQADV 1X6H SER A 6 UNP P49711 CLONING ARTIFACT SEQADV 1X6H GLY A 7 UNP P49711 CLONING ARTIFACT SEQADV 1X6H SER A 81 UNP P49711 CLONING ARTIFACT SEQADV 1X6H GLY A 82 UNP P49711 CLONING ARTIFACT SEQADV 1X6H PRO A 83 UNP P49711 CLONING ARTIFACT SEQADV 1X6H SER A 84 UNP P49711 CLONING ARTIFACT SEQADV 1X6H SER A 85 UNP P49711 CLONING ARTIFACT SEQADV 1X6H GLY A 86 UNP P49711 CLONING ARTIFACT
SEQRES 1 A 86 GLY SER SER GLY SER SER GLY ARG THR HIS THR GLY GLU SEQRES 2 A 86 LYS PRO TYR ALA CYS SER HIS CYS ASP LYS THR PHE ARG SEQRES 3 A 86 GLN LYS GLN LEU LEU ASP MET HIS PHE LYS ARG TYR HIS SEQRES 4 A 86 ASP PRO ASN PHE VAL PRO ALA ALA PHE VAL CYS SER LYS SEQRES 5 A 86 CYS GLY LYS THR PHE THR ARG ARG ASN THR MET ALA ARG SEQRES 6 A 86 HIS ALA ASP ASN CYS ALA GLY PRO ASP GLY VAL GLU GLY SEQRES 7 A 86 GLU ASN SER GLY PRO SER SER GLY
HET ZN A 201 1 HET ZN A 401 1
HETNAM ZN ZINC ION
FORMUL 2 ZN 2(ZN 2+)
HELIX 1 1 GLN A 27 TYR A 38 1 12 HELIX 2 2 ARG A 59 CYS A 70 1 12
SHEET 1 A 2 TYR A 16 ALA A 17 0 SHEET 2 A 2 THR A 24 PHE A 25 -1 O PHE A 25 N TYR A 16 SHEET 1 B 2 PHE A 48 VAL A 49 0 SHEET 2 B 2 THR A 56 PHE A 57 -1 O PHE A 57 N PHE A 48
LINK ZN ZN A 201 SG CYS A 18 1555 1555 2.37 LINK ZN ZN A 201 SG CYS A 21 1555 1555 2.33 LINK ZN ZN A 201 NE2 HIS A 34 1555 1555 2.36 LINK ZN ZN A 201 NE2 HIS A 39 1555 1555 2.35 LINK ZN ZN A 401 SG CYS A 50 1555 1555 2.35 LINK ZN ZN A 401 SG CYS A 53 1555 1555 2.33 LINK ZN ZN A 401 NE2 HIS A 66 1555 1555 2.37 LINK ZN ZN A 401 SG CYS A 70 1555 1555 2.33
SITE 1 AC1 4 CYS A 18 CYS A 21 HIS A 34 HIS A 39 SITE 1 AC2 4 CYS A 50 CYS A 53 HIS A 66 CYS A 70
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000