10 20 30 40 50 60 70 80 1X64 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CONTRACTILE PROTEIN 17-MAY-05 1X64
TITLE SOLUTION STRUCTURE OF THE LIM DOMAIN OF ALPHA-ACTININ-2 TITLE 2 ASSOCIATED LIM PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-ACTININ-2 ASSOCIATED LIM PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIM DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 6720456D19; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS LIM DOMAIN, ALPHA-ACTININ-2 ASSOCIATED LIM PROTEIN, PDZ AND KEYWDS 2 LIM DOMAIN 3, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 3 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 4 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 5 CONTRACTILE PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR X.R.QIN,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 1X64 1 VERSN REVDAT 1 17-NOV-05 1X64 0
JRNL AUTH X.R.QIN,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE LIM DOMAIN OF JRNL TITL 2 ALPHA-ACTININ-2 ASSOCIATED LIM PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT,P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1X64 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024426.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.18MM 13C,15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS- REMARK 210 HCL(PH7.0); 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3, 0.01MM ZNCL2 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20020425, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9296, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: SPECTROMETER_ID 1 FOR 3D_15N_SEPARATED_NOESY; REMARK 210 SPECTROMETER_ID 2 FOR 3D_13C_SEPARATED_NOESY
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 42 -81.02 -82.17 REMARK 500 1 ARG A 43 -78.18 -98.69 REMARK 500 1 PHE A 52 102.36 -52.66 REMARK 500 1 ASN A 60 105.61 -54.69 REMARK 500 1 THR A 77 -70.02 -64.56 REMARK 500 2 ALA A 42 -81.61 -82.97 REMARK 500 2 ARG A 43 -78.01 -99.55 REMARK 500 2 PHE A 52 102.09 -52.94 REMARK 500 2 ASN A 60 108.47 -52.37 REMARK 500 2 PRO A 86 5.07 -69.75 REMARK 500 3 ALA A 42 -79.34 -79.81 REMARK 500 3 ARG A 43 -81.35 -98.41 REMARK 500 3 PHE A 52 101.96 -52.41 REMARK 500 3 THR A 77 -70.49 -64.96 REMARK 500 3 PRO A 86 3.11 -69.75 REMARK 500 4 ALA A 42 -82.79 -82.05 REMARK 500 4 ARG A 43 -77.56 -99.94 REMARK 500 4 PHE A 52 102.33 -52.16 REMARK 500 4 ASN A 60 105.28 -59.89 REMARK 500 4 THR A 77 -70.85 -67.46 REMARK 500 4 SER A 87 173.58 -56.43 REMARK 500 5 ALA A 42 -80.82 -79.92 REMARK 500 5 ARG A 43 -77.91 -98.48 REMARK 500 5 PHE A 52 103.49 -52.46 REMARK 500 5 THR A 77 -70.00 -65.11 REMARK 500 6 ALA A 42 -80.96 -80.74 REMARK 500 6 ARG A 43 -77.84 -99.82 REMARK 500 6 PHE A 52 102.37 -52.40 REMARK 500 6 THR A 77 -71.06 -63.58 REMARK 500 7 PRO A 11 -179.13 -69.81 REMARK 500 7 ALA A 42 -79.22 -83.83 REMARK 500 7 ARG A 43 -84.70 -97.98 REMARK 500 7 PHE A 52 102.05 -52.24 REMARK 500 7 ASN A 60 108.24 -52.05 REMARK 500 7 THR A 77 -71.16 -69.67 REMARK 500 7 PRO A 86 13.47 -69.80 REMARK 500 8 ALA A 42 -79.89 -79.61 REMARK 500 8 ARG A 43 -81.09 -98.24 REMARK 500 8 PHE A 52 102.08 -52.12 REMARK 500 8 ASN A 60 103.97 -59.51 REMARK 500 8 THR A 77 -71.09 -68.48 REMARK 500 9 ALA A 42 -79.69 -80.82 REMARK 500 9 ARG A 43 -81.48 -98.02 REMARK 500 9 PHE A 52 102.00 -53.14 REMARK 500 9 THR A 77 -70.61 -62.37 REMARK 500 10 PRO A 11 -176.81 -69.78 REMARK 500 10 LYS A 14 109.39 -52.63 REMARK 500 10 ALA A 42 -79.48 -78.44 REMARK 500 10 ARG A 43 -81.67 -98.01 REMARK 500 10 PHE A 52 101.97 -52.32 REMARK 500 10 THR A 77 -70.22 -61.44 REMARK 500 10 PRO A 86 8.94 -69.86 REMARK 500 11 ALA A 42 -81.68 -81.49 REMARK 500 11 ARG A 43 -77.20 -101.10 REMARK 500 11 PHE A 52 102.12 -52.70 REMARK 500 11 ASN A 60 104.21 -58.39 REMARK 500 12 ALA A 42 -80.17 -78.86 REMARK 500 12 ARG A 43 -81.37 -98.08 REMARK 500 12 PHE A 52 101.93 -52.11 REMARK 500 12 THR A 77 -70.28 -62.45 REMARK 500 12 SER A 84 108.94 -52.08 REMARK 500 13 ALA A 42 -80.05 -76.71 REMARK 500 13 ARG A 43 -77.59 -98.71 REMARK 500 13 PHE A 52 102.03 -53.06 REMARK 500 13 ASN A 60 104.81 -52.59 REMARK 500 13 THR A 77 -71.10 -67.47 REMARK 500 13 PRO A 86 86.54 -69.73 REMARK 500 14 ALA A 42 -79.45 -79.37 REMARK 500 14 ARG A 43 -80.72 -98.73 REMARK 500 14 PHE A 52 102.11 -52.09 REMARK 500 14 SER A 84 -38.84 -31.98 REMARK 500 14 PRO A 86 88.04 -69.75 REMARK 500 15 PRO A 11 -177.09 -69.76 REMARK 500 15 ARG A 24 103.98 -58.79 REMARK 500 15 LYS A 30 -62.24 -97.69 REMARK 500 15 ALA A 42 -79.95 -82.36 REMARK 500 15 ARG A 43 -81.02 -98.05 REMARK 500 15 PHE A 52 102.81 -52.70 REMARK 500 15 PRO A 86 93.99 -69.74 REMARK 500 16 ALA A 42 -79.90 -80.21 REMARK 500 16 ARG A 43 -78.47 -100.43 REMARK 500 16 PHE A 52 101.98 -52.41 REMARK 500 16 THR A 77 -71.01 -62.66 REMARK 500 16 SER A 88 102.69 -56.05 REMARK 500 17 ALA A 42 -81.64 -79.73 REMARK 500 17 ARG A 43 -77.74 -98.01 REMARK 500 17 PHE A 52 101.79 -51.97 REMARK 500 17 THR A 77 -70.14 -64.21 REMARK 500 17 PRO A 86 29.04 -69.77 REMARK 500 18 ALA A 42 -80.80 -80.68 REMARK 500 18 ARG A 43 -77.80 -98.05 REMARK 500 18 PHE A 52 102.44 -51.98 REMARK 500 18 THR A 77 -70.09 -63.90 REMARK 500 19 ALA A 42 -78.86 -82.53 REMARK 500 19 ARG A 43 -80.86 -99.10 REMARK 500 19 PHE A 52 101.98 -52.63 REMARK 500 19 ASN A 60 106.38 -52.43 REMARK 500 19 GLU A 70 34.98 33.49 REMARK 500 19 THR A 77 -70.14 -65.45 REMARK 500 19 SER A 84 102.66 -51.96 REMARK 500 20 ALA A 42 -80.13 -78.91 REMARK 500 20 ARG A 43 -80.58 -97.99 REMARK 500 20 PHE A 52 102.58 -52.07 REMARK 500 20 ASN A 60 106.45 -53.87 REMARK 500 20 THR A 77 -71.39 -66.71 REMARK 500 20 PRO A 86 5.51 -69.78 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 28 SG REMARK 620 2 CYS A 31 SG 108.3 REMARK 620 3 HIS A 48 ND1 103.0 107.7 REMARK 620 4 CYS A 51 SG 103.4 115.8 117.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 54 SG REMARK 620 2 CYS A 57 SG 104.7 REMARK 620 3 CYS A 75 SG 110.9 105.4 REMARK 620 4 HIS A 78 ND1 112.7 117.6 105.4 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007120726.1 RELATED DB: TARGETDB
DBREF 1X64 A 8 83 UNP O70209 PDLI3_MOUSE 226 301
SEQADV 1X64 GLY A 1 UNP O70209 CLONING ARTIFACT SEQADV 1X64 SER A 2 UNP O70209 CLONING ARTIFACT SEQADV 1X64 SER A 3 UNP O70209 CLONING ARTIFACT SEQADV 1X64 GLY A 4 UNP O70209 CLONING ARTIFACT SEQADV 1X64 SER A 5 UNP O70209 CLONING ARTIFACT SEQADV 1X64 SER A 6 UNP O70209 CLONING ARTIFACT SEQADV 1X64 GLY A 7 UNP O70209 CLONING ARTIFACT SEQADV 1X64 SER A 84 UNP O70209 CLONING ARTIFACT SEQADV 1X64 GLY A 85 UNP O70209 CLONING ARTIFACT SEQADV 1X64 PRO A 86 UNP O70209 CLONING ARTIFACT SEQADV 1X64 SER A 87 UNP O70209 CLONING ARTIFACT SEQADV 1X64 SER A 88 UNP O70209 CLONING ARTIFACT SEQADV 1X64 GLY A 89 UNP O70209 CLONING ARTIFACT
SEQRES 1 A 89 GLY SER SER GLY SER SER GLY VAL ARG ALA PRO VAL THR SEQRES 2 A 89 LYS VAL HIS GLY GLY ALA GLY SER ALA GLN ARG MET PRO SEQRES 3 A 89 LEU CYS ASP LYS CYS GLY SER GLY ILE VAL GLY ALA VAL SEQRES 4 A 89 VAL LYS ALA ARG ASP LYS TYR ARG HIS PRO GLU CYS PHE SEQRES 5 A 89 VAL CYS ALA ASP CYS ASN LEU ASN LEU LYS GLN LYS GLY SEQRES 6 A 89 TYR PHE PHE VAL GLU GLY GLU LEU TYR CYS GLU THR HIS SEQRES 7 A 89 ALA ARG ALA ARG THR SER GLY PRO SER SER GLY
HET ZN A 201 1 HET ZN A 401 1
HETNAM ZN ZINC ION
FORMUL 2 ZN 2(ZN 2+)
HELIX 1 1 CYS A 75 THR A 83 1 9
SHEET 1 A 2 VAL A 40 LYS A 41 0 SHEET 2 A 2 TYR A 46 ARG A 47 -1 O ARG A 47 N VAL A 40 SHEET 1 B 2 PHE A 67 VAL A 69 0 SHEET 2 B 2 GLU A 72 TYR A 74 -1 O GLU A 72 N VAL A 69
LINK ZN ZN A 201 SG CYS A 28 1555 1555 2.38 LINK ZN ZN A 201 SG CYS A 31 1555 1555 2.25 LINK ZN ZN A 201 ND1 HIS A 48 1555 1555 2.07 LINK ZN ZN A 201 SG CYS A 51 1555 1555 2.26 LINK ZN ZN A 401 SG CYS A 54 1555 1555 2.35 LINK ZN ZN A 401 SG CYS A 57 1555 1555 2.24 LINK ZN ZN A 401 SG CYS A 75 1555 1555 2.33 LINK ZN ZN A 401 ND1 HIS A 78 1555 1555 2.06
SITE 1 AC1 4 CYS A 28 CYS A 31 HIS A 48 CYS A 51 SITE 1 AC2 4 CYS A 54 CYS A 57 CYS A 75 HIS A 78
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000