10 20 30 40 50 60 70 80 1X63 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CONTRACTILE PROTEIN 17-MAY-05 1X63
TITLE SOLUTION STRUCTURE OF THE SECOND LIM DOMAIN OF SKELETAL TITLE 2 MUSCLE LIM PROTEIN 1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SKELETAL MUSCLE LIM-PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIM DOMAIN; COMPND 5 SYNONYM: SLIM 1, SLIM, FOUR AND A HALF LIM DOMAINS PROTEIN COMPND 6 1, FHL-1; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FHL1, SLIM1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040816-09; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS LIM DOMAIN, SKELETAL MUSCLE LIM-PROTEIN 1, FOUR AND A HALF KEYWDS 2 LIM DOMAINS PROTEIN 1, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 3 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 4 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 5 RSGI, CONTRACTILE PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR X.R.QIN,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 1X63 1 VERSN REVDAT 1 17-NOV-05 1X63 0
JRNL AUTH X.R.QIN,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND LIM DOMAIN OF JRNL TITL 2 SKELETAL MUSCLE LIM PROTEIN 1 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT,P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1X63 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024425.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.24MM 13C,15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS- REMARK 210 HCL(PH7.0); 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3, 0.01MM ZNCL2 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9296, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 41.60 -102.63 REMARK 500 1 CYS A 9 169.50 -46.45 REMARK 500 1 SER A 15 142.49 -170.71 REMARK 500 1 THR A 37 159.45 -46.02 REMARK 500 1 PHE A 44 104.28 -55.07 REMARK 500 1 THR A 55 -38.02 -38.93 REMARK 500 1 PHE A 75 -73.34 -92.96 REMARK 500 1 ALA A 76 155.22 -45.28 REMARK 500 2 PHE A 22 33.12 70.55 REMARK 500 2 ASN A 48 -64.57 -95.70 REMARK 500 2 VAL A 52 109.01 -42.84 REMARK 500 2 GLU A 63 45.07 -84.61 REMARK 500 2 PHE A 75 -67.63 -93.09 REMARK 500 2 ALA A 76 177.86 -56.65 REMARK 500 3 SER A 2 108.07 -160.59 REMARK 500 3 THR A 37 159.51 -44.16 REMARK 500 3 PHE A 44 108.66 -57.05 REMARK 500 3 VAL A 52 116.41 -38.54 REMARK 500 3 PHE A 75 -73.36 -94.50 REMARK 500 3 ALA A 76 172.30 -51.21 REMARK 500 4 SER A 2 44.64 -80.54 REMARK 500 4 PHE A 22 35.47 70.33 REMARK 500 4 LYS A 41 -29.37 -38.36 REMARK 500 4 VAL A 68 -73.38 -40.03 REMARK 500 4 PHE A 75 -71.53 -87.98 REMARK 500 4 ALA A 76 171.94 -56.03 REMARK 500 5 SER A 3 -54.29 -128.97 REMARK 500 5 LYS A 41 -26.25 -38.78 REMARK 500 5 THR A 55 -38.60 -38.01 REMARK 500 5 GLU A 63 43.06 -82.38 REMARK 500 5 ALA A 76 170.33 -55.68 REMARK 500 5 SER A 77 138.81 -38.88 REMARK 500 5 PRO A 79 2.97 -69.72 REMARK 500 5 SER A 80 116.23 -34.07 REMARK 500 6 PHE A 22 33.04 70.69 REMARK 500 6 ASN A 48 -66.96 -92.06 REMARK 500 6 VAL A 68 -73.04 -41.19 REMARK 500 6 PHE A 75 -73.28 -86.27 REMARK 500 7 LYS A 8 95.11 -68.96 REMARK 500 7 THR A 11 90.77 -66.99 REMARK 500 7 PHE A 22 34.38 70.13 REMARK 500 7 THR A 37 159.72 -43.51 REMARK 500 7 PHE A 44 104.64 -52.71 REMARK 500 7 VAL A 52 115.74 -38.58 REMARK 500 7 VAL A 68 -71.54 -38.80 REMARK 500 7 PHE A 75 -74.05 -92.00 REMARK 500 7 ALA A 76 -179.23 -53.74 REMARK 500 7 PRO A 79 -173.87 -69.77 REMARK 500 8 SER A 6 131.56 -171.49 REMARK 500 8 THR A 10 117.99 -162.37 REMARK 500 8 PHE A 44 104.20 -54.82 REMARK 500 8 ASN A 48 -70.34 -93.96 REMARK 500 8 PRO A 60 99.37 -69.79 REMARK 500 8 PHE A 75 -75.96 -96.46 REMARK 500 8 ALA A 76 170.05 -49.57 REMARK 500 8 SER A 77 98.85 -63.07 REMARK 500 8 PRO A 79 -175.56 -69.68 REMARK 500 9 SER A 2 115.13 -174.00 REMARK 500 9 ASP A 14 45.70 -84.36 REMARK 500 9 PHE A 22 33.06 70.23 REMARK 500 9 PHE A 44 100.73 -59.30 REMARK 500 9 ASN A 48 -63.50 -94.73 REMARK 500 9 THR A 55 -35.79 -37.02 REMARK 500 9 PHE A 75 -75.03 -92.72 REMARK 500 9 ALA A 76 175.49 -52.27 REMARK 500 10 ARG A 12 41.75 -93.53 REMARK 500 10 LYS A 41 -26.59 -38.82 REMARK 500 10 PHE A 44 109.33 -55.24 REMARK 500 10 ASN A 48 -66.11 -92.80 REMARK 500 10 VAL A 52 105.26 -38.80 REMARK 500 10 VAL A 68 -71.30 -34.33 REMARK 500 10 PHE A 75 -70.19 -83.07 REMARK 500 10 PRO A 79 86.92 -69.74 REMARK 500 11 ASP A 14 41.95 -81.11 REMARK 500 11 THR A 37 172.15 -51.88 REMARK 500 11 ASN A 48 -69.48 -92.39 REMARK 500 11 VAL A 52 115.98 -38.31 REMARK 500 11 PHE A 75 -74.92 -83.53 REMARK 500 11 ALA A 76 178.45 -51.96 REMARK 500 12 THR A 37 160.40 -47.84 REMARK 500 12 ASN A 48 -69.19 -95.56 REMARK 500 12 VAL A 68 -72.07 -37.35 REMARK 500 12 PHE A 75 -70.53 -91.04 REMARK 500 12 ALA A 76 173.73 -55.89 REMARK 500 12 PRO A 79 91.24 -69.82 REMARK 500 12 SER A 81 117.65 -165.72 REMARK 500 13 THR A 10 38.59 -90.34 REMARK 500 13 THR A 37 169.04 -47.87 REMARK 500 13 ASN A 48 -67.01 -94.06 REMARK 500 13 LYS A 74 -64.55 -91.83 REMARK 500 13 PRO A 79 0.44 -69.71 REMARK 500 14 ARG A 12 41.81 -89.81 REMARK 500 14 ASP A 14 40.12 -104.40 REMARK 500 14 LYS A 35 39.22 38.65 REMARK 500 14 THR A 37 175.33 -49.39 REMARK 500 14 LYS A 41 -27.27 -37.83 REMARK 500 14 PHE A 44 105.68 -54.11 REMARK 500 14 ASN A 48 -64.63 -90.02 REMARK 500 14 PHE A 75 -68.32 -91.55 REMARK 500 14 ALA A 76 172.33 -54.73 REMARK 500 15 ASP A 14 44.50 -80.32 REMARK 500 15 THR A 37 159.16 -44.80 REMARK 500 15 VAL A 52 117.29 -36.14 REMARK 500 15 GLU A 63 43.83 -81.01 REMARK 500 15 VAL A 68 -71.64 -39.43 REMARK 500 15 PHE A 75 -69.72 -93.34 REMARK 500 15 ALA A 76 177.96 -56.27 REMARK 500 15 PRO A 79 93.71 -69.73 REMARK 500 16 SER A 5 41.64 -87.97 REMARK 500 16 PRO A 16 99.60 -69.76 REMARK 500 16 LYS A 50 46.63 35.37 REMARK 500 16 VAL A 52 107.28 -46.15 REMARK 500 16 PHE A 75 -71.04 -92.24 REMARK 500 16 ALA A 76 173.30 -54.39 REMARK 500 16 SER A 81 97.48 -68.98 REMARK 500 17 THR A 10 135.31 -172.42 REMARK 500 17 PHE A 44 103.94 -54.50 REMARK 500 17 ASN A 48 -67.52 -92.04 REMARK 500 17 GLU A 63 44.39 -83.90 REMARK 500 17 PHE A 75 -71.83 -100.59 REMARK 500 18 THR A 11 160.68 -46.71 REMARK 500 18 ARG A 12 161.79 -44.84 REMARK 500 18 GLU A 13 130.62 -170.93 REMARK 500 18 ASP A 14 42.57 -102.39 REMARK 500 18 PRO A 16 99.73 -69.72 REMARK 500 18 PHE A 22 33.68 71.12 REMARK 500 18 ASN A 48 -70.55 -92.76 REMARK 500 18 PHE A 75 -73.86 -90.57 REMARK 500 18 ALA A 76 179.70 -51.38 REMARK 500 19 ARG A 12 95.51 -68.98 REMARK 500 19 THR A 37 167.56 -48.07 REMARK 500 19 ASN A 48 -62.45 -92.01 REMARK 500 19 VAL A 68 -70.27 -38.54 REMARK 500 19 PHE A 75 -71.55 -105.04 REMARK 500 19 ALA A 76 172.77 -48.49 REMARK 500 19 SER A 77 39.81 35.17 REMARK 500 20 LYS A 8 120.39 -174.38 REMARK 500 20 ASP A 14 132.78 -172.73 REMARK 500 20 SER A 15 139.64 -170.24 REMARK 500 20 THR A 37 172.14 -52.70 REMARK 500 20 ASN A 48 -60.11 -96.50 REMARK 500 20 PRO A 60 97.31 -69.73 REMARK 500 20 ALA A 76 48.97 -79.48 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 18 SG REMARK 620 2 CYS A 21 SG 109.4 REMARK 620 3 HIS A 40 ND1 104.5 105.2 REMARK 620 4 CYS A 43 SG 112.7 108.4 116.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 46 SG REMARK 620 2 CYS A 49 SG 102.1 REMARK 620 3 CYS A 67 SG 113.1 112.6 REMARK 620 4 CYS A 70 SG 110.7 112.4 106.1 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001003796.1 RELATED DB: TARGETDB
DBREF 1X63 A 8 76 UNP Q13642 FHL1_HUMAN 90 158
SEQADV 1X63 GLY A 1 UNP Q13642 CLONING ARTIFACT SEQADV 1X63 SER A 2 UNP Q13642 CLONING ARTIFACT SEQADV 1X63 SER A 3 UNP Q13642 CLONING ARTIFACT SEQADV 1X63 GLY A 4 UNP Q13642 CLONING ARTIFACT SEQADV 1X63 SER A 5 UNP Q13642 CLONING ARTIFACT SEQADV 1X63 SER A 6 UNP Q13642 CLONING ARTIFACT SEQADV 1X63 GLY A 7 UNP Q13642 CLONING ARTIFACT SEQADV 1X63 SER A 77 UNP Q13642 CLONING ARTIFACT SEQADV 1X63 GLY A 78 UNP Q13642 CLONING ARTIFACT SEQADV 1X63 PRO A 79 UNP Q13642 CLONING ARTIFACT SEQADV 1X63 SER A 80 UNP Q13642 CLONING ARTIFACT SEQADV 1X63 SER A 81 UNP Q13642 CLONING ARTIFACT SEQADV 1X63 GLY A 82 UNP Q13642 CLONING ARTIFACT
SEQRES 1 A 82 GLY SER SER GLY SER SER GLY LYS CYS THR THR ARG GLU SEQRES 2 A 82 ASP SER PRO LYS CYS LYS GLY CYS PHE LYS ALA ILE VAL SEQRES 3 A 82 ALA GLY ASP GLN ASN VAL GLU TYR LYS GLY THR VAL TRP SEQRES 4 A 82 HIS LYS ASP CYS PHE THR CYS SER ASN CYS LYS GLN VAL SEQRES 5 A 82 ILE GLY THR GLY SER PHE PHE PRO LYS GLY GLU ASP PHE SEQRES 6 A 82 TYR CYS VAL THR CYS HIS GLU THR LYS PHE ALA SER GLY SEQRES 7 A 82 PRO SER SER GLY
HET ZN A 201 1 HET ZN A 401 1
HETNAM ZN ZINC ION
FORMUL 2 ZN 2(ZN 2+)
HELIX 1 1 VAL A 68 PHE A 75 1 8
SHEET 1 A 2 ASN A 31 GLU A 33 0 SHEET 2 A 2 VAL A 38 HIS A 40 -1 O TRP A 39 N VAL A 32 SHEET 1 B 2 PHE A 58 LYS A 61 0 SHEET 2 B 2 ASP A 64 CYS A 67 -1 O TYR A 66 N PHE A 59
LINK ZN ZN A 201 SG CYS A 18 1555 1555 2.36 LINK ZN ZN A 201 SG CYS A 21 1555 1555 2.35 LINK ZN ZN A 201 ND1 HIS A 40 1555 1555 2.05 LINK ZN ZN A 201 SG CYS A 43 1555 1555 2.26 LINK ZN ZN A 401 SG CYS A 46 1555 1555 2.36 LINK ZN ZN A 401 SG CYS A 49 1555 1555 2.33 LINK ZN ZN A 401 SG CYS A 67 1555 1555 2.26 LINK ZN ZN A 401 SG CYS A 70 1555 1555 2.31
SITE 1 AC1 4 CYS A 18 CYS A 21 HIS A 40 CYS A 43 SITE 1 AC2 4 CYS A 46 CYS A 49 CYS A 67 CYS A 70
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000