10 20 30 40 50 60 70 80 1X60 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 17-MAY-05 1X60
TITLE SOLUTION STRUCTURE OF THE PEPTIDOGLYCAN BINDING DOMAIN OF TITLE 2 B. SUBTILIS CELL WALL LYTIC ENZYME CWLC
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPORULATION-SPECIFIC N-ACETYLMURAMOYL-L-ALANINE COMPND 3 AMIDASE; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RESIDUES 1-79; COMPND 6 SYNONYM: CELL WALL HYDROLASE, AUTOLYSIN; COMPND 7 EC: 3.5.1.28; COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE30
KEYWDS CWLC, CWLCR, PEPTIDOGLYCAN, CELL WALL LYTIC AMIDASE, TANDEM KEYWDS 2 REPEATS, HYDROLASE
EXPDTA SOLUTION NMR
NUMMDL 30
AUTHOR M.MISHIMA,T.SHIDA,K.YABUKI,K.KATO,J.SEKIGUCHI,C.KOJIMA
REVDAT 2 24-FEB-09 1X60 1 VERSN REVDAT 1 09-AUG-05 1X60 0
JRNL AUTH M.MISHIMA,T.SHIDA,K.YABUKI,K.KATO,J.SEKIGUCHI, JRNL AUTH 2 C.KOJIMA JRNL TITL SOLUTION STRUCTURE OF THE PEPTIDOGLYCAN BINDING JRNL TITL 2 DOMAIN OF BACILLUS SUBTILIS CELL WALL LYTIC ENZYME JRNL TITL 3 CWLC: CHARACTERIZATION OF THE SPORULATION-RELATED JRNL TITL 4 REPEATS BY NMR(,) JRNL REF BIOCHEMISTRY V. 44 10153 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 16042392 JRNL DOI 10.1021/BI050624N
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1X60 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024422.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : 70MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.7MM CWLCR U-15N,13C 50MM REMARK 210 PHOSPHATE BUFFER K; 100% D2O; REMARK 210 1.7MM CWLCR U-15N 50MM REMARK 210 PHOSPHATE BUFFER K; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX, AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.3, SPARKY 3.110, REMARK 210 CYANA 1.05 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 2 104.07 59.84 REMARK 500 1 THR A 4 119.14 62.73 REMARK 500 1 SER A 7 91.62 -166.14 REMARK 500 1 ASP A 43 66.94 -55.18 REMARK 500 2 LYS A 2 170.69 58.79 REMARK 500 2 ASP A 43 65.16 -54.93 REMARK 500 3 LYS A 2 175.56 60.55 REMARK 500 3 THR A 4 31.49 -144.25 REMARK 500 3 SER A 6 122.16 -171.58 REMARK 500 3 ASP A 43 65.40 -54.80 REMARK 500 4 LYS A 3 -48.79 -133.46 REMARK 500 4 SER A 7 88.35 -154.95 REMARK 500 4 ASP A 43 65.96 -55.35 REMARK 500 5 LYS A 3 37.92 -165.70 REMARK 500 5 SER A 7 149.83 62.53 REMARK 500 5 ASP A 43 65.87 -55.08 REMARK 500 6 ASP A 43 68.55 -57.43 REMARK 500 7 SER A 5 76.36 -163.61 REMARK 500 7 ASP A 43 65.30 -53.72 REMARK 500 8 THR A 4 174.50 60.05 REMARK 500 8 SER A 6 99.06 61.29 REMARK 500 8 ASP A 43 66.67 -55.71 REMARK 500 9 LYS A 2 -52.67 -172.90 REMARK 500 9 SER A 5 -49.18 -141.14 REMARK 500 9 ASP A 43 66.08 -57.24 REMARK 500 10 THR A 4 163.83 64.96 REMARK 500 10 SER A 7 -167.51 -75.57 REMARK 500 10 ASP A 43 64.00 -56.02 REMARK 500 11 THR A 4 -177.92 50.52 REMARK 500 11 SER A 5 -75.12 -102.83 REMARK 500 11 ASP A 43 63.80 -56.18 REMARK 500 12 SER A 6 126.61 63.85 REMARK 500 12 SER A 7 -41.40 -174.77 REMARK 500 12 ASP A 43 65.68 -55.26 REMARK 500 13 LYS A 2 31.43 -144.51 REMARK 500 13 LYS A 3 -47.20 -138.64 REMARK 500 13 THR A 4 44.49 -94.60 REMARK 500 13 ASP A 43 64.91 -53.97 REMARK 500 14 LYS A 3 -77.11 65.89 REMARK 500 14 SER A 6 141.94 63.38 REMARK 500 14 SER A 7 41.52 -102.02 REMARK 500 14 ASP A 43 67.15 -55.92 REMARK 500 15 SER A 5 -42.74 -176.51 REMARK 500 15 SER A 6 83.20 59.62 REMARK 500 15 ASP A 43 64.62 -55.91 REMARK 500 16 SER A 7 126.72 63.64 REMARK 500 16 ASP A 43 64.06 -57.24 REMARK 500 17 SER A 5 79.11 -69.70 REMARK 500 17 ASP A 43 -85.39 38.73 REMARK 500 18 SER A 5 121.35 62.87 REMARK 500 18 ASP A 43 -85.72 32.12 REMARK 500 19 LYS A 2 106.41 -170.34 REMARK 500 19 LYS A 3 -45.89 -133.52 REMARK 500 19 THR A 4 -46.53 -135.55 REMARK 500 19 ASP A 43 -86.91 30.38 REMARK 500 20 LYS A 2 -47.42 -144.41 REMARK 500 20 THR A 4 -46.12 -130.19 REMARK 500 20 SER A 5 128.12 -170.54 REMARK 500 20 SER A 6 34.68 -99.01 REMARK 500 20 ASP A 43 -83.18 32.99 REMARK 500 21 THR A 4 102.80 60.33 REMARK 500 21 ASP A 43 66.51 -57.04 REMARK 500 22 LYS A 3 97.87 -163.08 REMARK 500 22 ASP A 43 66.64 -61.24 REMARK 500 23 LYS A 2 -42.17 -171.25 REMARK 500 23 ASP A 43 66.58 -61.27 REMARK 500 24 LYS A 3 -48.35 -140.04 REMARK 500 24 ASP A 43 66.28 -60.62 REMARK 500 25 ASP A 43 65.69 -61.17 REMARK 500 26 LYS A 2 95.10 -169.92 REMARK 500 26 THR A 4 101.96 60.85 REMARK 500 26 SER A 5 -70.35 -104.38 REMARK 500 26 ASP A 43 -84.47 47.11 REMARK 500 27 LYS A 2 179.41 61.88 REMARK 500 27 THR A 4 73.46 43.49 REMARK 500 27 SER A 7 -168.90 -71.04 REMARK 500 27 ASP A 43 67.35 -57.87 REMARK 500 28 LYS A 3 90.52 60.09 REMARK 500 28 SER A 5 -46.70 -134.88 REMARK 500 28 ASP A 43 -82.11 30.85 REMARK 500 29 SER A 7 -179.04 54.32 REMARK 500 29 ASP A 43 -82.43 16.70 REMARK 500 30 LYS A 2 -46.88 -135.42 REMARK 500 30 ASP A 43 -84.87 36.79 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1X60 A 1 79 UNP Q06320 CWLC_BACSU 177 255
SEQRES 1 A 79 LEU LYS LYS THR SER SER SER GLY LEU TYR LYS VAL GLN SEQRES 2 A 79 ILE GLY ALA PHE LYS VAL LYS ALA ASN ALA ASP SER LEU SEQRES 3 A 79 ALA SER ASN ALA GLU ALA LYS GLY PHE ASP SER ILE VAL SEQRES 4 A 79 LEU LEU LYS ASP GLY LEU TYR LYS VAL GLN ILE GLY ALA SEQRES 5 A 79 PHE SER SER LYS ASP ASN ALA ASP THR LEU ALA ALA ARG SEQRES 6 A 79 ALA LYS ASN ALA GLY PHE ASP ALA ILE VAL ILE LEU GLU SEQRES 7 A 79 SER
HELIX 1 1 VAL A 19 GLY A 34 1 16 HELIX 2 2 SER A 55 GLY A 70 1 16
SHEET 1 A 4 SER A 37 LYS A 42 0 SHEET 2 A 4 LEU A 45 PHE A 53 -1 O LEU A 45 N LYS A 42 SHEET 3 A 4 LEU A 9 PHE A 17 -1 N GLY A 15 O VAL A 48 SHEET 4 A 4 ILE A 74 GLU A 78 -1 O ILE A 74 N GLN A 13
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000