10 20 30 40 50 60 70 80 1X5L - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SIGNALING PROTEIN 16-MAY-05 1X5L
TITLE SOLUTION STRUCTURE OF THE SECOND FN3 DOMAIN OF EPH RECEPTOR TITLE 2 A8 PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPHRIN TYPE-A RECEPTOR 8; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FN3 DOMAIN; COMPND 5 SYNONYM: TYROSINE-PROTEIN KINASE RECEPTOR EEK, EPH-AND ELK- COMPND 6 RELATED KINASE, HEK3; COMPND 7 EC: 2.7.1.112; COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAZUSA CDNA FH16961; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040705-14; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS FN3 DOMAIN, EPHRIN TYPE-A RECEPTOR 8 PRECURSOR/TYROSINE- KEYWDS 2 PROTEIN KINASE RECEPTOR EEK, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 3 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 4 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 5 RSGI, SIGNALING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR X.R.QIN,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 1X5L 1 VERSN REVDAT 1 16-NOV-05 1X5L 0
JRNL AUTH X.R.QIN,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND FN3 DOMAIN OF EPH JRNL TITL 2 RECEPTOR A8 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1X5L COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024407.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.42MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL; REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9296, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: SPECTROMETER_ID 1 FOR 3D_15N_SEPARATED_NOESY, REMARK 210 SPECTROMETER_ID 2 FOR 3D_13C_SEPARATED_NOESY
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 GLU A 50 107.30 -55.39 REMARK 500 2 ALA A 97 105.31 -55.79 REMARK 500 3 SER A 12 171.25 -59.24 REMARK 500 3 GLU A 50 108.56 -59.10 REMARK 500 3 ALA A 97 102.77 -54.62 REMARK 500 3 PRO A 105 96.10 -69.76 REMARK 500 3 PRO A 108 89.88 -69.80 REMARK 500 4 ALA A 97 102.23 -58.39 REMARK 500 4 PRO A 105 2.80 -69.77 REMARK 500 5 ARG A 93 176.89 -55.68 REMARK 500 5 SER A 95 178.06 -59.34 REMARK 500 5 ALA A 97 104.56 -56.49 REMARK 500 5 PRO A 108 85.90 -69.70 REMARK 500 6 MET A 55 -179.66 -52.62 REMARK 500 6 SER A 95 178.12 -57.61 REMARK 500 6 ALA A 97 102.14 -56.67 REMARK 500 7 PRO A 105 2.76 -69.83 REMARK 500 8 PRO A 11 -179.32 -69.74 REMARK 500 8 GLU A 50 108.80 -57.18 REMARK 500 8 SER A 95 174.50 -58.08 REMARK 500 8 ALA A 97 102.07 -52.03 REMARK 500 8 PRO A 108 -176.51 -69.82 REMARK 500 9 GLN A 8 108.97 -56.88 REMARK 500 9 GLU A 50 109.60 -53.29 REMARK 500 9 ARG A 93 176.62 -54.53 REMARK 500 9 ALA A 97 105.17 -57.44 REMARK 500 9 PRO A 105 0.90 -69.72 REMARK 500 10 PRO A 108 89.05 -69.76 REMARK 500 11 PRO A 11 -164.86 -69.73 REMARK 500 11 PRO A 34 -164.72 -69.75 REMARK 500 11 PRO A 37 5.43 -69.80 REMARK 500 11 GLN A 56 -68.55 -98.00 REMARK 500 11 PRO A 108 90.67 -69.70 REMARK 500 12 GLU A 50 105.48 -53.59 REMARK 500 12 SER A 95 174.44 -59.35 REMARK 500 12 ALA A 97 102.93 -52.03 REMARK 500 12 THR A 102 179.08 -52.06 REMARK 500 12 PRO A 105 2.47 -69.76 REMARK 500 13 THR A 25 31.99 39.73 REMARK 500 13 PRO A 34 -178.20 -69.72 REMARK 500 13 GLU A 50 109.93 -52.63 REMARK 500 13 ALA A 97 102.53 -56.06 REMARK 500 13 PRO A 105 5.95 -69.80 REMARK 500 13 PRO A 108 2.79 -69.71 REMARK 500 14 GLU A 54 -64.77 -95.58 REMARK 500 14 PHE A 94 172.50 -58.32 REMARK 500 14 SER A 95 -70.86 -81.36 REMARK 500 14 PRO A 108 1.14 -69.77 REMARK 500 15 GLU A 20 -70.20 -97.99 REMARK 500 15 ARG A 21 -66.35 -97.62 REMARK 500 15 GLU A 50 109.25 -55.17 REMARK 500 15 THR A 66 -5.45 -58.86 REMARK 500 15 PRO A 105 1.90 -69.78 REMARK 500 16 SER A 88 -38.55 -35.12 REMARK 500 16 SER A 95 -75.08 -37.91 REMARK 500 16 PRO A 108 94.00 -69.79 REMARK 500 17 GLU A 35 -34.83 -34.50 REMARK 500 17 SER A 95 178.40 -52.21 REMARK 500 17 THR A 102 -179.95 -52.38 REMARK 500 17 PRO A 105 89.63 -69.79 REMARK 500 17 PRO A 108 4.14 -69.73 REMARK 500 18 PRO A 11 -174.91 -69.75 REMARK 500 18 GLN A 13 108.81 -57.40 REMARK 500 18 VAL A 14 102.01 -52.01 REMARK 500 18 GLU A 35 -35.65 -32.60 REMARK 500 18 SER A 95 175.47 -58.22 REMARK 500 18 PRO A 105 2.58 -69.74 REMARK 500 19 THR A 25 32.00 39.87 REMARK 500 19 SER A 95 177.89 -52.07 REMARK 500 19 ALA A 97 107.27 -56.63 REMARK 500 19 PRO A 108 93.15 -69.75 REMARK 500 20 GLU A 50 109.23 -56.11 REMARK 500 20 PHE A 94 171.23 -59.74 REMARK 500 20 SER A 95 -78.77 -79.03 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002001431.2 RELATED DB: TARGETDB
DBREF 1X5L A 8 105 UNP P29322 EPHA8_HUMAN 437 534
SEQADV 1X5L GLY A 1 UNP P29322 CLONING ARTIFACT SEQADV 1X5L SER A 2 UNP P29322 CLONING ARTIFACT SEQADV 1X5L SER A 3 UNP P29322 CLONING ARTIFACT SEQADV 1X5L GLY A 4 UNP P29322 CLONING ARTIFACT SEQADV 1X5L SER A 5 UNP P29322 CLONING ARTIFACT SEQADV 1X5L SER A 6 UNP P29322 CLONING ARTIFACT SEQADV 1X5L GLY A 7 UNP P29322 CLONING ARTIFACT SEQADV 1X5L SER A 106 UNP P29322 CLONING ARTIFACT SEQADV 1X5L GLY A 107 UNP P29322 CLONING ARTIFACT SEQADV 1X5L PRO A 108 UNP P29322 CLONING ARTIFACT SEQADV 1X5L SER A 109 UNP P29322 CLONING ARTIFACT SEQADV 1X5L SER A 110 UNP P29322 CLONING ARTIFACT SEQADV 1X5L GLY A 111 UNP P29322 CLONING ARTIFACT
SEQRES 1 A 111 GLY SER SER GLY SER SER GLY GLN ALA ALA PRO SER GLN SEQRES 2 A 111 VAL VAL VAL ILE ARG GLN GLU ARG ALA GLY GLN THR SER SEQRES 3 A 111 VAL SER LEU LEU TRP GLN GLU PRO GLU GLN PRO ASN GLY SEQRES 4 A 111 ILE ILE LEU GLU TYR GLU ILE LYS TYR TYR GLU LYS ASP SEQRES 5 A 111 LYS GLU MET GLN SER TYR SER THR LEU LYS ALA VAL THR SEQRES 6 A 111 THR ARG ALA THR VAL SER GLY LEU LYS PRO GLY THR ARG SEQRES 7 A 111 TYR VAL PHE GLN VAL ARG ALA ARG THR SER ALA GLY CYS SEQRES 8 A 111 GLY ARG PHE SER GLN ALA MET GLU VAL GLU THR GLY LYS SEQRES 9 A 111 PRO SER GLY PRO SER SER GLY
SHEET 1 A 3 ILE A 17 ARG A 18 0 SHEET 2 A 3 VAL A 27 TRP A 31 -1 O LEU A 30 N ARG A 18 SHEET 3 A 3 ARG A 67 VAL A 70 -1 O VAL A 70 N VAL A 27 SHEET 1 B 4 SER A 59 ALA A 63 0 SHEET 2 B 4 GLU A 43 GLU A 50 -1 N TYR A 44 O ALA A 63 SHEET 3 B 4 VAL A 83 THR A 87 -1 O ARG A 84 N GLU A 45 SHEET 4 B 4 GLY A 90 CYS A 91 -1 O GLY A 90 N THR A 87 SHEET 1 C 4 SER A 59 ALA A 63 0 SHEET 2 C 4 GLU A 43 GLU A 50 -1 N TYR A 44 O ALA A 63 SHEET 3 C 4 ARG A 78 PHE A 81 -1 O VAL A 80 N TYR A 49 SHEET 4 C 4 MET A 98 GLU A 101 -1 O VAL A 100 N TYR A 79
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000