10 20 30 40 50 60 70 80 1X5K - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CELL ADHESION 15-MAY-05 1X5K
TITLE THE SOLUTION STRUCTURE OF THE SIXTH FIBRONECTIN TYPE III TITLE 2 DOMAIN OF HUMAN NEOGENIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEOGENIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FN3 DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NEO1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P041213-07; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RGM BINDING, FIBRONECTIN TYPE III DOMAIN, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, CELL ADHESION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 1X5K 1 VERSN REVDAT 1 15-NOV-05 1X5K 0
JRNL AUTH N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL THE SOLUTION STRUCTURE OF THE SIXTH FIBRONECTIN JRNL TITL 2 TYPE III DOMAIN OF HUMAN NEOGENIN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1X5K COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024406.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.3MM FN3 DOMAIN U-15N,13C; REMARK 210 20MM D-TRIS HCL; 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 9 46.12 -83.59 REMARK 500 1 VAL A 17 153.46 -47.29 REMARK 500 1 PRO A 18 93.56 -69.70 REMARK 500 1 THR A 19 30.69 -83.80 REMARK 500 1 ALA A 47 52.98 34.66 REMARK 500 1 ASN A 48 -34.30 -34.43 REMARK 500 1 THR A 52 -30.41 -130.65 REMARK 500 1 ILE A 66 -31.98 -34.92 REMARK 500 1 ASN A 77 43.20 39.03 REMARK 500 1 ASP A 89 47.44 39.21 REMARK 500 1 LYS A 102 -73.18 -68.06 REMARK 500 1 PRO A 116 -163.80 -69.74 REMARK 500 1 SER A 123 131.87 -173.32 REMARK 500 2 ALA A 9 47.92 -93.67 REMARK 500 2 THR A 12 134.66 -35.72 REMARK 500 2 PHE A 14 108.75 -174.85 REMARK 500 2 PRO A 18 94.82 -69.71 REMARK 500 2 GLU A 46 58.71 -97.30 REMARK 500 2 ASN A 48 -36.10 -34.24 REMARK 500 2 SER A 59 146.80 -171.94 REMARK 500 2 ASN A 77 54.70 34.70 REMARK 500 2 ALA A 110 144.43 -35.07 REMARK 500 2 PRO A 116 -163.72 -69.80 REMARK 500 2 PRO A 121 96.18 -69.74 REMARK 500 3 SER A 2 107.67 -167.55 REMARK 500 3 GLU A 15 -177.45 -55.31 REMARK 500 3 ASP A 24 54.01 39.80 REMARK 500 3 ASN A 48 -32.62 -34.67 REMARK 500 3 LYS A 102 -75.23 -65.29 REMARK 500 3 PRO A 116 -163.83 -69.81 REMARK 500 4 HIS A 10 130.73 -38.04 REMARK 500 4 THR A 12 95.10 -66.48 REMARK 500 4 VAL A 17 154.01 -45.86 REMARK 500 4 LYS A 30 152.23 -47.53 REMARK 500 4 ALA A 47 51.11 37.71 REMARK 500 4 THR A 60 32.30 -87.92 REMARK 500 4 ILE A 66 -26.09 -39.16 REMARK 500 4 ASP A 89 45.32 36.27 REMARK 500 4 LYS A 102 -75.35 -85.23 REMARK 500 4 ALA A 110 120.10 -37.92 REMARK 500 4 PRO A 116 -163.83 -69.74 REMARK 500 5 PRO A 18 96.89 -69.73 REMARK 500 5 PRO A 22 -166.82 -69.78 REMARK 500 5 ALA A 47 52.26 35.87 REMARK 500 5 ASN A 48 -31.22 -35.65 REMARK 500 5 ASN A 77 41.59 -83.71 REMARK 500 5 ASP A 89 40.52 39.75 REMARK 500 5 LYS A 102 -71.98 -73.43 REMARK 500 5 ALA A 110 108.97 -57.35 REMARK 500 5 PRO A 116 -163.82 -69.78 REMARK 500 5 SER A 123 108.95 -165.62 REMARK 500 6 SER A 5 112.95 -161.61 REMARK 500 6 VAL A 17 152.03 -47.23 REMARK 500 6 ALA A 47 51.81 35.85 REMARK 500 6 ASP A 89 38.64 37.54 REMARK 500 6 LYS A 102 -70.38 -62.90 REMARK 500 6 PRO A 116 -163.87 -69.78 REMARK 500 7 THR A 12 42.68 -89.34 REMARK 500 7 THR A 13 -56.34 -122.16 REMARK 500 7 ALA A 47 52.31 34.21 REMARK 500 7 ASN A 48 48.92 -75.82 REMARK 500 7 ASN A 77 54.60 37.19 REMARK 500 7 LYS A 102 -71.93 -79.96 REMARK 500 7 PRO A 106 -164.15 -69.69 REMARK 500 7 PRO A 116 -163.80 -69.71 REMARK 500 7 ALA A 118 44.83 -78.85 REMARK 500 7 SER A 119 135.85 -39.10 REMARK 500 8 THR A 8 35.93 37.26 REMARK 500 8 HIS A 10 43.72 -83.39 REMARK 500 8 ASN A 48 25.27 40.21 REMARK 500 8 THR A 60 32.06 -84.60 REMARK 500 8 ILE A 66 -34.55 -37.21 REMARK 500 8 ASN A 77 42.38 -86.41 REMARK 500 8 LYS A 102 -71.86 -60.26 REMARK 500 8 PRO A 116 -163.66 -69.76 REMARK 500 8 ALA A 118 39.26 -82.16 REMARK 500 9 THR A 12 -56.82 -124.36 REMARK 500 9 GLU A 15 -178.73 -52.43 REMARK 500 9 PRO A 18 94.95 -69.81 REMARK 500 9 ASN A 48 -28.35 -38.03 REMARK 500 9 THR A 60 45.86 -87.65 REMARK 500 9 ASP A 61 128.38 -172.61 REMARK 500 9 ASN A 77 43.81 -91.54 REMARK 500 9 ASP A 89 54.97 35.82 REMARK 500 9 LYS A 102 -72.52 -79.20 REMARK 500 9 PRO A 116 -163.95 -69.77 REMARK 500 9 SER A 123 -49.82 -131.54 REMARK 500 10 PRO A 18 96.50 -69.76 REMARK 500 10 PRO A 22 -172.20 -69.77 REMARK 500 10 ASN A 48 -33.11 -35.31 REMARK 500 10 THR A 60 36.65 -96.57 REMARK 500 10 ASN A 77 36.22 39.66 REMARK 500 10 PRO A 116 -163.62 -69.82 REMARK 500 10 ALA A 118 40.85 -90.77 REMARK 500 11 VAL A 17 154.20 -41.24 REMARK 500 11 ALA A 47 68.03 -106.35 REMARK 500 11 ASN A 48 -31.92 -35.20 REMARK 500 11 ILE A 66 -32.06 -36.12 REMARK 500 11 VAL A 75 170.34 -55.47 REMARK 500 11 ARG A 78 150.11 -37.17 REMARK 500 11 LYS A 102 -75.20 -83.89 REMARK 500 11 ALA A 110 108.49 -52.75 REMARK 500 11 PRO A 116 -163.74 -69.74 REMARK 500 12 VAL A 17 153.60 -47.31 REMARK 500 12 GLU A 46 73.82 -102.43 REMARK 500 12 ALA A 47 64.47 -100.31 REMARK 500 12 ASN A 48 -35.75 -38.61 REMARK 500 12 ASN A 77 31.10 36.95 REMARK 500 12 SER A 101 -36.65 -36.18 REMARK 500 12 LYS A 102 -74.40 -65.64 REMARK 500 12 PRO A 116 -163.67 -69.77 REMARK 500 12 ALA A 118 44.30 -85.20 REMARK 500 12 PRO A 121 -179.27 -69.69 REMARK 500 13 PRO A 18 99.95 -69.79 REMARK 500 13 PRO A 22 -170.30 -69.86 REMARK 500 13 GLU A 46 47.60 -80.75 REMARK 500 13 ASN A 48 25.10 39.44 REMARK 500 13 ASN A 63 32.96 -97.55 REMARK 500 13 ILE A 66 -37.44 -34.27 REMARK 500 13 LYS A 102 -70.82 -74.56 REMARK 500 13 PRO A 116 -164.04 -69.75 REMARK 500 13 PRO A 121 94.80 -69.73 REMARK 500 14 SER A 6 101.61 -49.91 REMARK 500 14 HIS A 10 55.47 -91.55 REMARK 500 14 PRO A 22 -177.38 -69.71 REMARK 500 14 ASN A 48 49.39 -75.89 REMARK 500 14 THR A 60 46.94 -82.64 REMARK 500 14 ASP A 89 54.26 32.49 REMARK 500 14 LYS A 102 -72.57 -62.93 REMARK 500 14 PRO A 116 -163.82 -69.71 REMARK 500 14 SER A 123 -61.16 -95.26 REMARK 500 15 HIS A 10 -39.84 -35.65 REMARK 500 15 VAL A 17 152.26 -45.55 REMARK 500 15 PRO A 22 -177.54 -69.76 REMARK 500 15 ALA A 47 45.13 33.97 REMARK 500 15 ASN A 48 -30.87 -36.29 REMARK 500 15 LYS A 102 -72.19 -68.89 REMARK 500 15 PRO A 116 -163.59 -69.80 REMARK 500 15 PRO A 121 89.68 -69.84 REMARK 500 16 THR A 8 140.11 -35.63 REMARK 500 16 PRO A 18 97.03 -69.75 REMARK 500 16 TRP A 41 -176.11 -174.99 REMARK 500 16 ALA A 47 65.22 -102.12 REMARK 500 16 SER A 59 132.15 -174.13 REMARK 500 16 ILE A 66 -28.15 -38.90 REMARK 500 16 ASN A 77 43.89 -85.89 REMARK 500 16 LYS A 102 -70.53 -73.57 REMARK 500 16 PRO A 116 -163.75 -69.75 REMARK 500 17 THR A 13 134.59 -36.88 REMARK 500 17 TRP A 41 -176.84 -171.01 REMARK 500 17 ASN A 48 25.02 39.38 REMARK 500 17 ASN A 77 36.29 -86.88 REMARK 500 17 ASP A 89 43.62 36.91 REMARK 500 17 LYS A 102 -73.57 -65.95 REMARK 500 17 PRO A 116 -163.70 -69.76 REMARK 500 17 ALA A 118 45.27 -79.58 REMARK 500 17 SER A 119 48.60 -89.63 REMARK 500 18 SER A 6 49.20 -96.36 REMARK 500 18 THR A 12 106.48 -45.10 REMARK 500 18 VAL A 17 154.10 -44.97 REMARK 500 18 ALA A 47 51.37 34.29 REMARK 500 18 ASN A 48 -35.16 -34.34 REMARK 500 18 SER A 59 144.06 -171.18 REMARK 500 18 ASN A 77 42.16 -91.94 REMARK 500 18 ASP A 89 43.31 36.28 REMARK 500 18 LYS A 102 -75.08 -83.89 REMARK 500 18 PRO A 116 -163.82 -69.73 REMARK 500 18 SER A 122 104.07 -38.30 REMARK 500 19 HIS A 10 42.22 -93.17 REMARK 500 19 PRO A 18 98.68 -69.78 REMARK 500 19 SER A 45 -33.57 -39.94 REMARK 500 19 ALA A 47 51.41 37.89 REMARK 500 19 ASN A 48 -29.90 -36.53 REMARK 500 19 LYS A 50 108.03 -55.10 REMARK 500 19 ILE A 66 -31.99 -34.86 REMARK 500 19 ARG A 78 145.77 -34.32 REMARK 500 19 ASP A 89 41.10 38.75 REMARK 500 19 LYS A 102 -75.55 -81.51 REMARK 500 19 PRO A 116 -163.49 -69.71 REMARK 500 19 ALA A 118 39.50 -82.92 REMARK 500 20 THR A 8 58.27 -101.81 REMARK 500 20 VAL A 17 152.67 -44.93 REMARK 500 20 PRO A 18 98.55 -69.80 REMARK 500 20 PRO A 22 -175.51 -69.77 REMARK 500 20 TRP A 41 -179.69 -174.46 REMARK 500 20 ALA A 47 45.44 34.49 REMARK 500 20 THR A 60 47.33 -84.78 REMARK 500 20 ASP A 61 118.47 -171.89 REMARK 500 20 ASP A 89 39.63 38.21 REMARK 500 20 LYS A 102 -75.07 -66.81 REMARK 500 20 ALA A 110 106.53 -55.84 REMARK 500 20 PRO A 116 -163.54 -69.77 REMARK 500 20 ALA A 118 42.94 -81.08 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002001179.6 RELATED DB: TARGETDB
DBREF 1X5K A 8 118 UNP Q92859 NEO1_HUMAN 944 1054
SEQADV 1X5K GLY A 1 UNP Q92859 CLONING ARTIFACT SEQADV 1X5K SER A 2 UNP Q92859 CLONING ARTIFACT SEQADV 1X5K SER A 3 UNP Q92859 CLONING ARTIFACT SEQADV 1X5K GLY A 4 UNP Q92859 CLONING ARTIFACT SEQADV 1X5K SER A 5 UNP Q92859 CLONING ARTIFACT SEQADV 1X5K SER A 6 UNP Q92859 CLONING ARTIFACT SEQADV 1X5K GLY A 7 UNP Q92859 CLONING ARTIFACT SEQADV 1X5K SER A 119 UNP Q92859 CLONING ARTIFACT SEQADV 1X5K GLY A 120 UNP Q92859 CLONING ARTIFACT SEQADV 1X5K PRO A 121 UNP Q92859 CLONING ARTIFACT SEQADV 1X5K SER A 122 UNP Q92859 CLONING ARTIFACT SEQADV 1X5K SER A 123 UNP Q92859 CLONING ARTIFACT SEQADV 1X5K GLY A 124 UNP Q92859 CLONING ARTIFACT
SEQRES 1 A 124 GLY SER SER GLY SER SER GLY THR ALA HIS GLY THR THR SEQRES 2 A 124 PHE GLU LEU VAL PRO THR SER PRO PRO LYS ASP VAL THR SEQRES 3 A 124 VAL VAL SER LYS GLU GLY LYS PRO LYS THR ILE ILE VAL SEQRES 4 A 124 ASN TRP GLN PRO PRO SER GLU ALA ASN GLY LYS ILE THR SEQRES 5 A 124 GLY TYR ILE ILE TYR TYR SER THR ASP VAL ASN ALA GLU SEQRES 6 A 124 ILE HIS ASP TRP VAL ILE GLU PRO VAL VAL GLY ASN ARG SEQRES 7 A 124 LEU THR HIS GLN ILE GLN GLU LEU THR LEU ASP THR PRO SEQRES 8 A 124 TYR TYR PHE LYS ILE GLN ALA ARG ASN SER LYS GLY MET SEQRES 9 A 124 GLY PRO MET SER GLU ALA VAL GLN PHE ARG THR PRO LYS SEQRES 10 A 124 ALA SER GLY PRO SER SER GLY
SHEET 1 A 3 LYS A 23 SER A 29 0 SHEET 2 A 3 ILE A 37 GLN A 42 -1 O GLN A 42 N LYS A 23 SHEET 3 A 3 THR A 80 ILE A 83 -1 O HIS A 81 N VAL A 39 SHEET 1 B 4 VAL A 70 VAL A 74 0 SHEET 2 B 4 GLY A 53 SER A 59 -1 N TYR A 54 O VAL A 74 SHEET 3 B 4 PRO A 91 ARG A 99 -1 O LYS A 95 N TYR A 57 SHEET 4 B 4 VAL A 111 ARG A 114 -1 O VAL A 111 N PHE A 94
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000