1X5J - Header Asymmetric Unit

HEADER CELL ADHESION 15-MAY-05 1X5J

TITLE THE SOLUTION STRUCTURE OF THE FIFTH FIBRONECTIN TYPE III TITLE 2 DOMAIN OF HUMAN NEOGENIN

COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEOGENIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FN3 DOMAIN; COMPND 5 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NEO1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P041213-06; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS

KEYWDS RGM BINDING, FIBRONECTIN TYPE III DOMAIN, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, CELL ADHESION

EXPDTA SOLUTION NMR

NUMMDL 20

AUTHOR N.TOCHIO,A.SASAGAWA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)

REVDAT 2 24-FEB-09 1X5J 1 VERSN REVDAT 1 15-NOV-05 1X5J 0

JRNL AUTH N.TOCHIO,A.SASAGAWA,S.KOSHIBA,M.INOUE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL THE SOLUTION STRUCTURE OF THE FIFTH FIBRONECTIN JRNL TITL 2 TYPE III DOMAIN OF HUMAN NEOGENIN JRNL REF TO BE PUBLISHED JRNL REFN

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1X5J COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024405.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.3MM FN3 DOMAIN U-15N,13C; REMARK 210 20MM D-TRIS HCL; 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 -179.28 -60.33 REMARK 500 1 PRO A 12 -179.16 -69.77 REMARK 500 1 LEU A 34 153.52 -44.99 REMARK 500 1 PRO A 35 -175.10 -69.73 REMARK 500 1 LYS A 36 -70.32 -39.38 REMARK 500 1 SER A 43 64.49 -100.98 REMARK 500 1 TYR A 70 133.22 -173.14 REMARK 500 1 ASN A 78 53.95 36.41 REMARK 500 1 THR A 95 178.63 -59.92 REMARK 500 1 SER A 97 174.77 -50.50 REMARK 500 2 VAL A 15 107.27 -58.61 REMARK 500 2 ASP A 31 79.32 -115.04 REMARK 500 2 PRO A 35 -171.37 -69.77 REMARK 500 2 GLN A 38 66.90 -103.19 REMARK 500 2 THR A 41 75.99 -113.78 REMARK 500 2 LYS A 59 143.80 -34.52 REMARK 500 2 ALA A 65 117.32 -160.94 REMARK 500 2 LYS A 89 60.07 -110.14 REMARK 500 2 SER A 93 147.01 -172.28 REMARK 500 2 SER A 97 174.67 -59.69 REMARK 500 2 SER A 111 118.58 -36.15 REMARK 500 3 PRO A 8 -177.12 -69.71 REMARK 500 3 VAL A 15 102.13 -48.71 REMARK 500 3 ILE A 19 98.96 -62.51 REMARK 500 3 PRO A 35 -167.99 -69.78 REMARK 500 3 GLN A 38 52.94 -104.52 REMARK 500 3 ALA A 65 116.73 -161.77 REMARK 500 3 SER A 97 164.54 -44.09 REMARK 500 3 MET A 98 135.26 -38.91 REMARK 500 3 SER A 108 149.83 -37.48 REMARK 500 3 PRO A 110 89.45 -69.74 REMARK 500 4 SER A 6 159.59 -39.53 REMARK 500 4 PRO A 12 -179.82 -69.72 REMARK 500 4 ILE A 19 95.03 -69.83 REMARK 500 4 PRO A 35 -174.06 -69.76 REMARK 500 4 LYS A 36 -37.38 -36.12 REMARK 500 4 THR A 41 41.05 -81.14 REMARK 500 4 ASP A 42 28.85 37.72 REMARK 500 4 ASN A 78 52.75 36.77 REMARK 500 4 SER A 93 137.51 -174.71 REMARK 500 4 THR A 95 174.47 -52.24 REMARK 500 4 PRO A 110 91.49 -69.72 REMARK 500 5 ILE A 19 93.25 -68.60 REMARK 500 5 ASP A 31 77.37 -113.67 REMARK 500 5 ASN A 32 -39.11 -39.33 REMARK 500 5 PRO A 35 -165.02 -69.77 REMARK 500 5 GLN A 38 64.63 -100.70 REMARK 500 5 ILE A 40 81.69 -69.02 REMARK 500 5 THR A 41 46.68 -93.44 REMARK 500 5 PRO A 55 -175.27 -69.71 REMARK 500 5 SER A 69 126.37 -170.85 REMARK 500 5 SER A 93 139.67 -171.97 REMARK 500 5 SER A 97 165.70 -44.57 REMARK 500 6 SER A 3 -55.98 -121.21 REMARK 500 6 PRO A 35 -175.06 -69.76 REMARK 500 6 THR A 41 44.07 -106.23 REMARK 500 6 LYS A 89 148.83 -170.97 REMARK 500 6 SER A 97 176.55 -50.93 REMARK 500 7 SER A 2 138.54 -172.94 REMARK 500 7 PRO A 8 -170.17 -69.76 REMARK 500 7 PRO A 35 -169.07 -69.78 REMARK 500 7 LYS A 39 108.29 -35.38 REMARK 500 7 TYR A 70 128.46 -174.93 REMARK 500 7 SER A 97 171.66 -54.65 REMARK 500 7 MET A 98 108.87 -49.31 REMARK 500 7 SER A 108 -72.12 -43.26 REMARK 500 7 PRO A 110 1.22 -69.74 REMARK 500 7 SER A 111 120.04 -39.19 REMARK 500 8 SER A 5 78.39 -109.36 REMARK 500 8 PRO A 8 -165.70 -69.78 REMARK 500 8 ILE A 19 99.63 -57.14 REMARK 500 8 PRO A 35 -169.09 -69.71 REMARK 500 8 ILE A 40 -74.36 -65.46 REMARK 500 8 THR A 41 47.71 33.54 REMARK 500 8 PRO A 55 -163.82 -69.74 REMARK 500 8 TYR A 60 142.94 -33.93 REMARK 500 8 ALA A 65 116.02 -162.18 REMARK 500 8 THR A 67 -177.21 -174.97 REMARK 500 8 TYR A 70 146.44 -173.15 REMARK 500 8 ASN A 78 39.18 37.94 REMARK 500 8 LYS A 89 70.18 -103.55 REMARK 500 9 SER A 5 117.81 -169.96 REMARK 500 9 PRO A 8 -176.53 -69.70 REMARK 500 9 VAL A 15 104.27 -47.47 REMARK 500 9 LEU A 34 150.95 -45.35 REMARK 500 9 PRO A 35 -177.45 -69.72 REMARK 500 9 THR A 41 41.36 -81.28 REMARK 500 9 ASP A 42 34.59 36.51 REMARK 500 9 THR A 95 174.98 -56.50 REMARK 500 9 SER A 97 174.54 -54.63 REMARK 500 10 PRO A 35 -163.54 -69.72 REMARK 500 10 LYS A 36 44.49 -78.53 REMARK 500 10 HIS A 37 107.17 -175.16 REMARK 500 10 GLN A 38 89.92 -53.74 REMARK 500 10 SER A 43 44.41 -86.61 REMARK 500 10 PRO A 55 -177.78 -69.81 REMARK 500 10 LYS A 59 171.58 -45.86 REMARK 500 10 ALA A 65 115.00 -160.40 REMARK 500 10 SER A 93 -179.40 -172.17 REMARK 500 10 SER A 97 167.30 -45.81 REMARK 500 10 MET A 98 119.91 -39.11 REMARK 500 10 LEU A 107 109.14 -53.58 REMARK 500 11 SER A 6 -74.07 -83.36 REMARK 500 11 PRO A 8 -172.88 -69.71 REMARK 500 11 VAL A 15 99.13 -57.90 REMARK 500 11 ASN A 32 -38.35 -36.73 REMARK 500 11 PRO A 35 -165.14 -69.80 REMARK 500 11 GLN A 38 96.07 -65.82 REMARK 500 11 THR A 41 65.82 -112.56 REMARK 500 11 ALA A 65 117.52 -163.02 REMARK 500 11 ASN A 78 51.24 38.64 REMARK 500 11 THR A 95 175.95 -55.97 REMARK 500 11 SER A 97 164.52 -42.02 REMARK 500 11 MET A 98 108.91 -44.86 REMARK 500 11 SER A 108 38.21 35.37 REMARK 500 12 PRO A 35 -174.03 -69.73 REMARK 500 12 GLN A 38 77.79 -103.23 REMARK 500 12 ILE A 40 85.88 -64.63 REMARK 500 12 THR A 41 72.98 -117.26 REMARK 500 12 ASN A 53 -39.51 -39.33 REMARK 500 12 ALA A 65 116.45 -161.91 REMARK 500 12 THR A 67 -177.35 -175.46 REMARK 500 12 TYR A 70 127.42 -174.09 REMARK 500 13 PRO A 8 -172.11 -69.73 REMARK 500 13 LEU A 34 153.77 -36.96 REMARK 500 13 PRO A 35 -175.02 -69.78 REMARK 500 13 GLN A 38 93.02 -60.46 REMARK 500 13 THR A 41 34.07 -84.29 REMARK 500 13 ASP A 42 54.18 34.33 REMARK 500 13 PRO A 55 -164.29 -69.75 REMARK 500 13 ALA A 56 36.04 -84.44 REMARK 500 13 ASN A 57 109.23 -175.02 REMARK 500 13 ARG A 91 27.63 47.70 REMARK 500 13 THR A 95 175.74 -57.48 REMARK 500 14 MET A 9 152.08 -43.55 REMARK 500 14 SER A 33 -37.20 -39.72 REMARK 500 14 PRO A 35 -178.58 -69.73 REMARK 500 14 LYS A 36 -36.19 -38.28 REMARK 500 14 SER A 43 61.33 -108.44 REMARK 500 14 PRO A 55 -164.23 -69.75 REMARK 500 14 ALA A 65 116.45 -162.45 REMARK 500 14 TYR A 70 138.46 -170.22 REMARK 500 14 LYS A 89 56.10 -100.90 REMARK 500 15 PRO A 8 -178.08 -69.82 REMARK 500 15 PRO A 35 -167.75 -69.74 REMARK 500 15 GLN A 38 96.54 -67.77 REMARK 500 15 THR A 41 36.85 -83.33 REMARK 500 15 ASP A 42 25.10 44.17 REMARK 500 15 PRO A 55 -165.30 -69.80 REMARK 500 15 THR A 58 145.45 -37.45 REMARK 500 15 TYR A 70 140.63 -174.99 REMARK 500 15 THR A 95 173.15 -55.02 REMARK 500 15 SER A 97 171.72 -49.49 REMARK 500 15 LEU A 107 -62.65 -128.54 REMARK 500 15 SER A 108 174.90 -55.61 REMARK 500 16 SER A 6 123.71 -39.53 REMARK 500 16 MET A 9 154.92 -43.09 REMARK 500 16 PRO A 35 -165.49 -69.73 REMARK 500 16 LYS A 39 143.47 -35.53 REMARK 500 16 THR A 41 39.12 -84.07 REMARK 500 16 PRO A 55 -162.96 -69.81 REMARK 500 16 ALA A 56 -179.66 -48.75 REMARK 500 16 ASN A 57 95.30 -30.74 REMARK 500 16 ALA A 65 115.36 -161.29 REMARK 500 16 SER A 93 140.99 -170.61 REMARK 500 16 SER A 97 170.95 -56.98 REMARK 500 16 SER A 112 -60.05 -131.06 REMARK 500 17 PRO A 8 -167.60 -69.79 REMARK 500 17 MET A 9 159.18 -42.11 REMARK 500 17 PRO A 12 -179.09 -69.78 REMARK 500 17 LEU A 34 153.37 -45.44 REMARK 500 17 PRO A 35 -177.71 -69.75 REMARK 500 17 SER A 43 40.21 36.30 REMARK 500 17 PRO A 55 -174.04 -69.79 REMARK 500 17 LYS A 59 155.88 -44.12 REMARK 500 17 ALA A 65 115.06 -160.86 REMARK 500 17 SER A 97 167.02 -45.45 REMARK 500 18 PRO A 8 -178.70 -69.76 REMARK 500 18 LEU A 34 154.51 -49.33 REMARK 500 18 PRO A 35 -163.64 -69.74 REMARK 500 18 GLN A 38 36.00 33.02 REMARK 500 18 ILE A 40 98.02 -67.39 REMARK 500 18 THR A 67 -175.48 -175.51 REMARK 500 18 SER A 69 115.23 -166.75 REMARK 500 18 ASN A 78 51.12 39.17 REMARK 500 18 LYS A 89 58.80 -108.91 REMARK 500 18 THR A 95 171.63 -52.77 REMARK 500 19 PRO A 8 -174.76 -69.71 REMARK 500 19 ASN A 32 -31.78 -37.49 REMARK 500 19 PRO A 35 -178.82 -69.73 REMARK 500 19 SER A 43 46.40 -99.21 REMARK 500 19 PRO A 55 -173.26 -69.75 REMARK 500 19 LYS A 59 142.35 -34.47 REMARK 500 19 THR A 67 -175.05 -175.37 REMARK 500 19 LYS A 89 70.05 -116.95 REMARK 500 19 MET A 98 108.60 -55.29 REMARK 500 19 THR A 99 109.09 -44.03 REMARK 500 20 SER A 6 -61.42 -97.83 REMARK 500 20 PRO A 35 -178.95 -69.73 REMARK 500 20 ILE A 40 109.15 -58.92 REMARK 500 20 PRO A 55 -169.34 -69.80 REMARK 500 20 ALA A 65 117.23 -162.29 REMARK 500 20 SER A 69 124.57 -175.15 REMARK 500 20 THR A 95 -174.94 -68.80 REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002001179.5 RELATED DB: TARGETDB

DBREF 1X5J A 8 107 UNP Q92859 NEO1_HUMAN 853 952

SEQADV 1X5J GLY A 1 UNP Q92859 CLONING ARTIFACT SEQADV 1X5J SER A 2 UNP Q92859 CLONING ARTIFACT SEQADV 1X5J SER A 3 UNP Q92859 CLONING ARTIFACT SEQADV 1X5J GLY A 4 UNP Q92859 CLONING ARTIFACT SEQADV 1X5J SER A 5 UNP Q92859 CLONING ARTIFACT SEQADV 1X5J SER A 6 UNP Q92859 CLONING ARTIFACT SEQADV 1X5J GLY A 7 UNP Q92859 CLONING ARTIFACT SEQADV 1X5J SER A 108 UNP Q92859 CLONING ARTIFACT SEQADV 1X5J GLY A 109 UNP Q92859 CLONING ARTIFACT SEQADV 1X5J PRO A 110 UNP Q92859 CLONING ARTIFACT SEQADV 1X5J SER A 111 UNP Q92859 CLONING ARTIFACT SEQADV 1X5J SER A 112 UNP Q92859 CLONING ARTIFACT SEQADV 1X5J GLY A 113 UNP Q92859 CLONING ARTIFACT

SEQRES 1 A 113 GLY SER SER GLY SER SER GLY PRO MET MET PRO PRO VAL SEQRES 2 A 113 GLY VAL GLN ALA SER ILE LEU SER HIS ASP THR ILE ARG SEQRES 3 A 113 ILE THR TRP ALA ASP ASN SER LEU PRO LYS HIS GLN LYS SEQRES 4 A 113 ILE THR ASP SER ARG TYR TYR THR VAL ARG TRP LYS THR SEQRES 5 A 113 ASN ILE PRO ALA ASN THR LYS TYR LYS ASN ALA ASN ALA SEQRES 6 A 113 THR THR LEU SER TYR LEU VAL THR GLY LEU LYS PRO ASN SEQRES 7 A 113 THR LEU TYR GLU PHE SER VAL MET VAL THR LYS GLY ARG SEQRES 8 A 113 ARG SER SER THR TRP SER MET THR ALA HIS GLY THR THR SEQRES 9 A 113 PHE GLU LEU SER GLY PRO SER SER GLY

SHEET 1 A 3 VAL A 13 SER A 21 0 SHEET 2 A 3 THR A 24 ALA A 30 -1 O ARG A 26 N SER A 18 SHEET 3 A 3 SER A 69 THR A 73 -1 O TYR A 70 N ILE A 27 SHEET 1 B 3 LYS A 61 ASN A 62 0 SHEET 2 B 3 TYR A 45 TRP A 50 -1 N TRP A 50 O LYS A 61 SHEET 3 B 3 SER A 84 THR A 88 -1 O SER A 84 N ARG A 49 SHEET 1 C 2 LEU A 80 TYR A 81 0 SHEET 2 C 2 GLY A 102 THR A 103 -1 O GLY A 102 N TYR A 81

CISPEP 1 ILE A 54 PRO A 55 1 -0.14 CISPEP 2 ILE A 54 PRO A 55 2 -0.12 CISPEP 3 ILE A 54 PRO A 55 3 -0.11 CISPEP 4 ILE A 54 PRO A 55 4 -0.18 CISPEP 5 ILE A 54 PRO A 55 5 -0.14 CISPEP 6 ILE A 54 PRO A 55 6 -0.15 CISPEP 7 ILE A 54 PRO A 55 7 -0.07 CISPEP 8 ILE A 54 PRO A 55 8 -0.14 CISPEP 9 ILE A 54 PRO A 55 9 0.01 CISPEP 10 ILE A 54 PRO A 55 10 -0.05 CISPEP 11 ILE A 54 PRO A 55 11 -0.06 CISPEP 12 ILE A 54 PRO A 55 12 -0.14 CISPEP 13 ILE A 54 PRO A 55 13 -0.11 CISPEP 14 ILE A 54 PRO A 55 14 -0.18 CISPEP 15 ILE A 54 PRO A 55 15 -0.07 CISPEP 16 ILE A 54 PRO A 55 16 -0.06 CISPEP 17 ILE A 54 PRO A 55 17 -0.10 CISPEP 18 ILE A 54 PRO A 55 18 -0.14 CISPEP 19 ILE A 54 PRO A 55 19 -0.09 CISPEP 20 ILE A 54 PRO A 55 20 -0.09

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000