10 20 30 40 50 60 70 80 1X5H - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CELL ADHESION 15-MAY-05 1X5H
TITLE THE SOLUTION STRUCTURE OF THE THIRD FIBRONECTIN TYPE III TITLE 2 DOMAIN OF HUMAN NEOGENIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEOGENIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FN3 DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NEO1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P041213-04; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RGM BINDING, FIBRONECTIN TYPE III DOMAIN, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, CELL ADHESION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR N.TOCHIO,A.SASAGAWA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 1X5H 1 VERSN REVDAT 1 15-NOV-05 1X5H 0
JRNL AUTH N.TOCHIO,A.SASAGAWA,S.KOSHIBA,M.INOUE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL THE SOLUTION STRUCTURE OF THE THIRD FIBRONECTIN JRNL TITL 2 TYPE III DOMAIN OF HUMAN NEOGENIN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1X5H COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024403.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5MM FN3 DOMAIN U-15N,13C; REMARK 210 20MM D-TRIS HCL; 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 47 103.93 -45.56 REMARK 500 1 ASN A 48 37.27 -86.79 REMARK 500 1 ASP A 107 168.51 -44.14 REMARK 500 1 PRO A 124 -171.63 -69.77 REMARK 500 1 PRO A 129 -174.94 -69.80 REMARK 500 2 VAL A 17 145.97 -35.24 REMARK 500 2 VAL A 29 92.89 -55.80 REMARK 500 2 GLN A 47 146.77 -38.52 REMARK 500 3 SER A 6 176.54 -55.82 REMARK 500 3 ASP A 8 175.64 -48.56 REMARK 500 3 ALA A 10 117.82 -173.90 REMARK 500 3 ARG A 12 39.09 38.04 REMARK 500 3 THR A 13 32.56 -85.94 REMARK 500 3 VAL A 17 154.25 -38.00 REMARK 500 3 VAL A 29 80.37 -58.41 REMARK 500 3 TRP A 108 106.33 -52.17 REMARK 500 3 ASP A 117 93.97 -51.78 REMARK 500 3 ASP A 119 93.24 -55.51 REMARK 500 3 PRO A 124 -177.32 -69.70 REMARK 500 3 PRO A 129 -176.14 -69.72 REMARK 500 4 SER A 3 151.86 -35.67 REMARK 500 4 VAL A 17 153.22 -37.94 REMARK 500 4 VAL A 29 84.75 -57.21 REMARK 500 4 GLN A 47 133.79 -36.74 REMARK 500 4 LYS A 64 42.94 -80.87 REMARK 500 4 SER A 65 -33.38 -130.74 REMARK 500 4 TRP A 108 109.45 -45.80 REMARK 500 4 VAL A 126 138.88 -33.86 REMARK 500 4 PRO A 129 -165.87 -69.77 REMARK 500 5 VAL A 17 153.34 -41.51 REMARK 500 5 VAL A 29 92.67 -45.61 REMARK 500 5 GLN A 47 -35.19 -33.15 REMARK 500 5 VAL A 72 -77.42 -130.32 REMARK 500 5 PRO A 124 -177.43 -69.77 REMARK 500 5 SER A 131 148.27 -35.91 REMARK 500 6 ALA A 10 114.34 -166.65 REMARK 500 6 ASP A 16 46.39 -82.53 REMARK 500 6 PRO A 18 84.13 -69.72 REMARK 500 6 ALA A 20 115.43 -169.69 REMARK 500 6 VAL A 29 108.57 -52.41 REMARK 500 6 GLN A 47 107.38 -48.96 REMARK 500 6 ASP A 107 142.69 -36.34 REMARK 500 6 TRP A 108 98.36 -56.65 REMARK 500 6 THR A 113 178.24 -58.32 REMARK 500 6 LEU A 118 98.85 -48.01 REMARK 500 6 ASP A 119 42.46 -100.81 REMARK 500 6 SER A 131 -58.66 -123.66 REMARK 500 7 SER A 2 175.70 -49.38 REMARK 500 7 VAL A 9 154.42 -39.66 REMARK 500 7 LEU A 14 99.83 -67.77 REMARK 500 7 PRO A 18 81.19 -69.70 REMARK 500 7 ALA A 20 121.62 -174.54 REMARK 500 7 VAL A 29 95.45 -62.61 REMARK 500 7 ASN A 48 32.68 38.65 REMARK 500 7 ARG A 63 63.91 -108.16 REMARK 500 7 LEU A 118 91.74 -61.26 REMARK 500 7 PRO A 129 -171.87 -69.82 REMARK 500 8 ALA A 10 71.75 -67.34 REMARK 500 8 VAL A 17 153.30 -46.41 REMARK 500 8 VAL A 29 94.20 -52.55 REMARK 500 8 SER A 65 -38.30 -134.34 REMARK 500 8 THR A 106 160.59 -46.24 REMARK 500 8 ASP A 107 177.82 -57.32 REMARK 500 8 GLU A 115 -37.69 -37.16 REMARK 500 8 ASP A 119 104.48 -51.83 REMARK 500 8 PRO A 129 -174.57 -69.75 REMARK 500 9 VAL A 17 150.60 -47.03 REMARK 500 9 VAL A 29 105.64 -53.05 REMARK 500 9 GLN A 47 143.97 -39.10 REMARK 500 9 ASP A 107 136.23 -33.02 REMARK 500 9 TRP A 108 104.70 -55.61 REMARK 500 9 ASP A 117 85.73 -67.07 REMARK 500 10 VAL A 9 42.07 32.62 REMARK 500 10 VAL A 17 154.16 -44.38 REMARK 500 10 VAL A 29 90.02 -58.90 REMARK 500 10 GLN A 47 99.93 -59.73 REMARK 500 10 SER A 65 -36.22 -134.12 REMARK 500 10 ASP A 107 139.04 -33.96 REMARK 500 10 TRP A 108 106.26 -49.13 REMARK 500 10 GLU A 115 -34.30 -39.73 REMARK 500 10 LEU A 118 95.98 -52.29 REMARK 500 11 SER A 2 42.27 35.66 REMARK 500 11 VAL A 17 150.30 -43.90 REMARK 500 11 VAL A 29 88.06 -51.49 REMARK 500 11 ARG A 63 73.39 -104.34 REMARK 500 11 ASP A 107 138.40 -39.59 REMARK 500 11 TRP A 108 106.11 -54.00 REMARK 500 11 GLU A 115 -27.32 -38.62 REMARK 500 12 VAL A 9 139.29 -171.71 REMARK 500 12 VAL A 17 151.92 -37.05 REMARK 500 12 VAL A 29 94.97 -59.76 REMARK 500 12 ARG A 63 71.60 -107.56 REMARK 500 12 ASP A 107 141.88 -33.97 REMARK 500 12 LEU A 118 117.90 -35.97 REMARK 500 13 ALA A 10 112.73 -163.67 REMARK 500 13 LEU A 14 110.48 -174.34 REMARK 500 13 VAL A 17 155.11 -38.48 REMARK 500 13 VAL A 29 88.76 -52.91 REMARK 500 13 ASP A 107 138.60 -38.38 REMARK 500 13 TRP A 108 104.54 -51.36 REMARK 500 13 GLU A 115 -37.01 -38.16 REMARK 500 13 PRO A 124 -176.85 -69.74 REMARK 500 13 VAL A 126 142.38 -173.80 REMARK 500 13 PRO A 129 -171.22 -69.81 REMARK 500 14 ALA A 10 137.03 -172.54 REMARK 500 14 LEU A 14 50.00 -92.34 REMARK 500 14 SER A 19 58.80 -116.03 REMARK 500 14 VAL A 29 89.40 -59.35 REMARK 500 14 ARG A 63 47.64 -93.45 REMARK 500 14 ASP A 107 130.63 -32.00 REMARK 500 14 TRP A 108 98.15 -47.33 REMARK 500 14 ASP A 117 88.73 -53.12 REMARK 500 14 PRO A 124 -174.00 -69.74 REMARK 500 14 GLU A 125 115.34 -167.14 REMARK 500 14 PRO A 129 -178.88 -69.78 REMARK 500 14 SER A 130 128.83 -171.98 REMARK 500 15 VAL A 9 41.41 -87.39 REMARK 500 15 THR A 13 143.01 -37.60 REMARK 500 15 VAL A 17 153.49 -42.75 REMARK 500 15 VAL A 29 102.20 -50.90 REMARK 500 15 GLN A 47 133.36 -34.38 REMARK 500 15 GLU A 115 -38.45 -34.17 REMARK 500 15 ASP A 117 97.89 -68.31 REMARK 500 15 VAL A 126 45.46 32.03 REMARK 500 15 SER A 130 -55.31 -122.37 REMARK 500 16 VAL A 9 126.80 -36.78 REMARK 500 16 SER A 19 51.52 -107.98 REMARK 500 16 VAL A 29 88.18 -52.28 REMARK 500 16 GLN A 47 74.80 -112.84 REMARK 500 16 ASP A 107 170.15 -50.42 REMARK 500 16 THR A 113 172.80 -56.76 REMARK 500 16 GLU A 115 -33.20 -36.50 REMARK 500 16 ASP A 119 51.38 30.79 REMARK 500 16 GLU A 120 105.00 -51.73 REMARK 500 16 PRO A 124 -179.85 -69.76 REMARK 500 16 PRO A 129 -171.81 -69.72 REMARK 500 17 VAL A 29 90.59 -59.87 REMARK 500 17 GLN A 47 142.56 -39.06 REMARK 500 17 LYS A 64 25.11 43.99 REMARK 500 17 SER A 65 -33.09 -132.83 REMARK 500 17 THR A 75 33.83 -83.52 REMARK 500 17 GLU A 115 -38.41 -34.56 REMARK 500 17 PRO A 124 -173.95 -69.77 REMARK 500 17 SER A 131 145.68 -36.31 REMARK 500 18 SER A 6 42.38 37.73 REMARK 500 18 ALA A 10 122.59 -35.19 REMARK 500 18 ARG A 12 -65.75 -103.99 REMARK 500 18 VAL A 29 99.28 -48.62 REMARK 500 18 GLN A 47 -42.11 -28.98 REMARK 500 18 SER A 65 -34.15 -133.41 REMARK 500 18 ASP A 117 47.12 -86.39 REMARK 500 18 GLU A 120 123.79 -173.54 REMARK 500 18 ARG A 122 47.14 38.44 REMARK 500 18 PRO A 129 87.54 -69.74 REMARK 500 18 SER A 131 150.20 -48.04 REMARK 500 19 ALA A 10 78.80 -117.44 REMARK 500 19 THR A 13 137.17 -35.79 REMARK 500 19 VAL A 29 93.08 -63.01 REMARK 500 19 ALA A 61 -39.73 -39.63 REMARK 500 19 ASP A 107 144.99 -36.91 REMARK 500 19 TRP A 108 103.63 -55.63 REMARK 500 19 GLU A 115 -34.23 -39.64 REMARK 500 19 PRO A 129 -174.39 -69.74 REMARK 500 20 ASP A 8 179.30 -52.20 REMARK 500 20 ALA A 10 164.28 -47.25 REMARK 500 20 THR A 13 32.47 -93.26 REMARK 500 20 VAL A 17 151.50 -47.19 REMARK 500 20 VAL A 29 94.41 -58.38 REMARK 500 20 GLN A 47 134.48 -35.30 REMARK 500 20 ARG A 63 68.51 -118.60 REMARK 500 20 ASP A 107 168.91 -46.27 REMARK 500 20 LEU A 118 113.54 -35.42 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002001179.4 RELATED DB: TARGETDB
DBREF 1X5H A 8 126 UNP Q92859 NEO1_HUMAN 616 734
SEQADV 1X5H GLY A 1 UNP Q92859 CLONING ARTIFACT SEQADV 1X5H SER A 2 UNP Q92859 CLONING ARTIFACT SEQADV 1X5H SER A 3 UNP Q92859 CLONING ARTIFACT SEQADV 1X5H GLY A 4 UNP Q92859 CLONING ARTIFACT SEQADV 1X5H SER A 5 UNP Q92859 CLONING ARTIFACT SEQADV 1X5H SER A 6 UNP Q92859 CLONING ARTIFACT SEQADV 1X5H GLY A 7 UNP Q92859 CLONING ARTIFACT SEQADV 1X5H SER A 127 UNP Q92859 CLONING ARTIFACT SEQADV 1X5H GLY A 128 UNP Q92859 CLONING ARTIFACT SEQADV 1X5H PRO A 129 UNP Q92859 CLONING ARTIFACT SEQADV 1X5H SER A 130 UNP Q92859 CLONING ARTIFACT SEQADV 1X5H SER A 131 UNP Q92859 CLONING ARTIFACT SEQADV 1X5H GLY A 132 UNP Q92859 CLONING ARTIFACT
SEQRES 1 A 132 GLY SER SER GLY SER SER GLY ASP VAL ALA VAL ARG THR SEQRES 2 A 132 LEU SER ASP VAL PRO SER ALA ALA PRO GLN ASN LEU SER SEQRES 3 A 132 LEU GLU VAL ARG ASN SER LYS SER ILE MET ILE HIS TRP SEQRES 4 A 132 GLN PRO PRO ALA PRO ALA THR GLN ASN GLY GLN ILE THR SEQRES 5 A 132 GLY TYR LYS ILE ARG TYR ARG LYS ALA SER ARG LYS SER SEQRES 6 A 132 ASP VAL THR GLU THR LEU VAL SER GLY THR GLN LEU SER SEQRES 7 A 132 GLN LEU ILE GLU GLY LEU ASP ARG GLY THR GLU TYR ASN SEQRES 8 A 132 PHE ARG VAL ALA ALA LEU THR ILE ASN GLY THR GLY PRO SEQRES 9 A 132 ALA THR ASP TRP LEU SER ALA GLU THR PHE GLU SER ASP SEQRES 10 A 132 LEU ASP GLU THR ARG VAL PRO GLU VAL SER GLY PRO SER SEQRES 11 A 132 SER GLY
SHEET 1 A 3 GLN A 23 GLU A 28 0 SHEET 2 A 3 SER A 34 GLN A 40 -1 O HIS A 38 N SER A 26 SHEET 3 A 3 SER A 78 GLU A 82 -1 O GLN A 79 N ILE A 37 SHEET 1 B 3 ILE A 51 TYR A 54 0 SHEET 2 B 3 ALA A 95 THR A 98 -1 O LEU A 97 N THR A 52 SHEET 3 B 3 GLY A 101 ALA A 105 -1 O GLY A 101 N THR A 98 SHEET 1 C 4 ARG A 63 THR A 68 0 SHEET 2 C 4 ARG A 57 LYS A 60 -1 N TYR A 58 O THR A 68 SHEET 3 C 4 GLU A 89 ARG A 93 -1 O ASN A 91 N ARG A 59 SHEET 4 C 4 LEU A 109 GLU A 112 -1 O ALA A 111 N TYR A 90
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000