10 20 30 40 50 60 70 80 1X5G - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CELL ADHESION 15-MAY-05 1X5G
TITLE THE SOLUTION STRUCTURE OF THE SECOND FIBRONECTIN TYPE III TITLE 2 DOMAIN OF HUMAN NEOGENIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEOGENIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FN3 DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NEO1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P041213-03; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RGM BINDING, FIBRONECTIN TYPE III DOMAIN, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, CELL ADHESION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 1X5G 1 VERSN REVDAT 1 15-NOV-05 1X5G 0
JRNL AUTH N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL THE SOLUTION STRUCTURE OF THE SECOND FIBRONECTIN JRNL TITL 2 TYPE III DOMAIN OF HUMAN NEOGENIN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1X5G COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024402.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.9MM FN3 DOMAIN U-15N,13C; REMARK 210 20MM D-TRIS HCL; 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 109.65 -35.14 REMARK 500 1 GLU A 10 37.83 -84.06 REMARK 500 1 PRO A 13 -163.94 -69.78 REMARK 500 1 GLU A 14 -176.88 -52.28 REMARK 500 1 PRO A 22 -177.37 -69.72 REMARK 500 1 LYS A 58 100.05 -55.46 REMARK 500 1 VAL A 98 160.51 -41.04 REMARK 500 1 PRO A 113 2.84 -69.80 REMARK 500 1 SER A 114 107.71 -34.62 REMARK 500 2 GLN A 12 146.08 -174.26 REMARK 500 2 GLN A 16 46.47 -81.02 REMARK 500 2 PRO A 22 -178.32 -69.75 REMARK 500 2 PRO A 31 0.53 -69.76 REMARK 500 2 LYS A 58 98.14 -57.25 REMARK 500 2 LYS A 93 -39.92 -39.58 REMARK 500 2 PRO A 96 97.70 -69.75 REMARK 500 2 VAL A 98 175.09 -47.11 REMARK 500 2 ASP A 102 133.46 -38.80 REMARK 500 3 SER A 2 -43.67 -132.30 REMARK 500 3 PRO A 13 -166.31 -69.81 REMARK 500 3 GLN A 16 42.28 74.33 REMARK 500 3 PRO A 18 -172.61 -69.69 REMARK 500 3 PRO A 22 -175.16 -69.77 REMARK 500 3 ASN A 23 49.98 39.40 REMARK 500 3 LYS A 58 101.80 -33.68 REMARK 500 3 LYS A 93 -34.33 -35.33 REMARK 500 3 VAL A 98 -177.34 -69.68 REMARK 500 3 ASP A 102 130.57 -39.08 REMARK 500 4 PRO A 18 -176.27 -69.76 REMARK 500 4 PRO A 22 -178.39 -69.78 REMARK 500 4 LYS A 58 99.09 -55.65 REMARK 500 4 ASP A 102 132.37 -38.94 REMARK 500 4 VAL A 103 79.75 -118.01 REMARK 500 4 SER A 115 152.45 -40.69 REMARK 500 5 PRO A 13 -174.94 -69.77 REMARK 500 5 GLN A 16 33.88 -93.00 REMARK 500 5 ALA A 21 107.04 -50.77 REMARK 500 5 PRO A 22 -176.02 -69.74 REMARK 500 5 ASN A 23 44.50 39.35 REMARK 500 5 ILE A 48 105.76 -53.88 REMARK 500 5 LYS A 58 100.46 -53.44 REMARK 500 5 SER A 69 53.49 -105.47 REMARK 500 5 SER A 111 -54.52 -120.56 REMARK 500 6 PRO A 13 -178.45 -69.77 REMARK 500 6 PRO A 22 -177.17 -69.81 REMARK 500 6 ASN A 23 52.54 35.31 REMARK 500 6 PRO A 31 1.51 -69.72 REMARK 500 6 LYS A 58 91.83 -53.72 REMARK 500 6 VAL A 98 -175.52 -55.57 REMARK 500 6 THR A 100 154.66 -40.88 REMARK 500 6 ASP A 102 138.10 -34.63 REMARK 500 6 SER A 111 42.83 -91.73 REMARK 500 7 SER A 5 102.04 -46.70 REMARK 500 7 GLN A 16 40.12 -81.90 REMARK 500 7 PRO A 31 1.93 -69.76 REMARK 500 7 LYS A 58 99.81 -55.97 REMARK 500 7 THR A 100 155.43 -43.12 REMARK 500 7 VAL A 103 74.68 -119.52 REMARK 500 7 SER A 111 153.63 -43.50 REMARK 500 8 SER A 3 152.32 -40.41 REMARK 500 8 GLN A 12 148.44 -172.82 REMARK 500 8 PRO A 13 -175.19 -69.76 REMARK 500 8 PRO A 22 -179.46 -69.77 REMARK 500 8 PRO A 31 1.03 -69.75 REMARK 500 8 LYS A 93 -37.21 -38.57 REMARK 500 8 VAL A 98 -175.25 -57.99 REMARK 500 8 ASP A 102 134.04 -34.94 REMARK 500 8 PRO A 113 -179.75 -69.72 REMARK 500 9 PRO A 13 -168.14 -69.78 REMARK 500 9 GLN A 16 48.95 -79.60 REMARK 500 9 PRO A 22 -175.32 -69.78 REMARK 500 9 ASN A 23 46.94 34.27 REMARK 500 9 PRO A 31 1.84 -69.78 REMARK 500 9 LYS A 58 101.23 -29.56 REMARK 500 9 HIS A 71 31.12 -89.77 REMARK 500 9 SER A 72 126.61 -171.84 REMARK 500 9 ASP A 102 129.98 -37.26 REMARK 500 9 VAL A 103 73.63 -118.42 REMARK 500 9 ASP A 110 86.71 -69.74 REMARK 500 9 SER A 111 70.07 -109.34 REMARK 500 9 PRO A 113 2.65 -69.75 REMARK 500 9 SER A 114 44.60 71.48 REMARK 500 10 ARG A 8 85.13 -62.46 REMARK 500 10 PRO A 22 -174.20 -69.78 REMARK 500 10 ASN A 23 51.75 34.40 REMARK 500 10 PRO A 31 1.67 -69.76 REMARK 500 10 LYS A 58 97.80 -55.60 REMARK 500 10 THR A 60 -34.28 -133.16 REMARK 500 10 SER A 69 51.36 -116.24 REMARK 500 10 LYS A 93 -28.62 -39.41 REMARK 500 10 VAL A 98 175.20 -50.71 REMARK 500 11 GLU A 14 150.75 -46.66 REMARK 500 11 PRO A 31 3.22 -69.67 REMARK 500 11 LYS A 58 95.36 -58.96 REMARK 500 11 SER A 69 51.16 -102.78 REMARK 500 11 VAL A 98 178.20 -50.95 REMARK 500 11 ASP A 102 136.75 -36.26 REMARK 500 11 PRO A 113 93.64 -69.72 REMARK 500 12 VAL A 9 173.87 -56.05 REMARK 500 12 PRO A 13 -170.26 -69.84 REMARK 500 12 PRO A 22 -178.14 -69.79 REMARK 500 12 PRO A 31 0.26 -69.74 REMARK 500 12 LYS A 58 94.67 -56.49 REMARK 500 12 HIS A 94 -70.18 -64.86 REMARK 500 12 VAL A 98 173.22 -58.70 REMARK 500 12 PRO A 113 3.02 -69.75 REMARK 500 12 SER A 114 111.47 -33.83 REMARK 500 13 SER A 2 108.58 -56.15 REMARK 500 13 SER A 5 108.68 -34.50 REMARK 500 13 GLN A 16 104.29 -49.19 REMARK 500 13 ALA A 21 108.23 -47.63 REMARK 500 13 PRO A 22 -179.07 -69.82 REMARK 500 13 PRO A 31 5.10 -69.77 REMARK 500 13 VAL A 98 178.16 -48.48 REMARK 500 13 ASP A 102 146.01 -38.06 REMARK 500 14 SER A 2 42.48 34.44 REMARK 500 14 VAL A 9 137.31 -34.67 REMARK 500 14 PRO A 22 -176.74 -69.75 REMARK 500 14 ASN A 23 45.11 37.40 REMARK 500 14 VAL A 42 -34.45 -39.96 REMARK 500 14 LYS A 58 94.88 -57.68 REMARK 500 14 LYS A 93 -36.65 -39.92 REMARK 500 14 THR A 100 158.03 -44.58 REMARK 500 14 ASP A 102 132.96 -38.82 REMARK 500 14 ASP A 110 42.89 -80.83 REMARK 500 14 SER A 115 42.31 36.85 REMARK 500 15 SER A 6 46.85 -84.75 REMARK 500 15 ARG A 8 114.75 -174.57 REMARK 500 15 GLU A 10 68.00 -106.25 REMARK 500 15 PRO A 13 -176.47 -69.73 REMARK 500 15 PRO A 22 -179.33 -69.74 REMARK 500 15 PRO A 31 1.80 -69.75 REMARK 500 15 LYS A 58 104.90 -33.86 REMARK 500 15 PRO A 96 87.52 -69.79 REMARK 500 15 VAL A 98 166.53 -42.98 REMARK 500 15 ASP A 110 45.19 -85.21 REMARK 500 16 ARG A 8 87.06 -69.84 REMARK 500 16 GLU A 10 86.84 -62.36 REMARK 500 16 GLN A 16 39.73 -84.62 REMARK 500 16 ALA A 21 109.97 -57.63 REMARK 500 16 PRO A 22 -178.40 -69.76 REMARK 500 16 PRO A 31 3.95 -69.79 REMARK 500 16 LYS A 58 101.96 -59.88 REMARK 500 16 HIS A 94 -70.33 -61.85 REMARK 500 16 VAL A 98 167.54 -43.17 REMARK 500 16 ASP A 102 133.99 -38.55 REMARK 500 16 VAL A 103 77.87 -118.74 REMARK 500 16 ASP A 110 45.93 -83.65 REMARK 500 17 SER A 5 143.32 -172.68 REMARK 500 17 ARG A 8 153.17 -36.45 REMARK 500 17 PRO A 13 -176.97 -69.75 REMARK 500 17 PRO A 18 -179.54 -69.78 REMARK 500 17 PRO A 22 -174.11 -69.77 REMARK 500 17 ASN A 23 51.60 33.99 REMARK 500 17 LYS A 58 99.31 -60.38 REMARK 500 17 THR A 60 -32.31 -131.73 REMARK 500 17 VAL A 98 168.87 -46.37 REMARK 500 17 SER A 114 42.63 34.42 REMARK 500 18 SER A 3 -50.19 -132.07 REMARK 500 18 VAL A 9 40.11 -106.04 REMARK 500 18 PRO A 13 -174.93 -69.77 REMARK 500 18 ALA A 21 115.32 -34.86 REMARK 500 18 ASN A 45 -54.88 -128.43 REMARK 500 18 LYS A 58 96.92 -56.17 REMARK 500 18 LYS A 93 -32.88 -39.60 REMARK 500 18 PRO A 96 86.79 -69.78 REMARK 500 18 VAL A 98 163.76 -41.86 REMARK 500 18 ASP A 102 133.13 -33.74 REMARK 500 18 SER A 115 42.09 36.16 REMARK 500 19 SER A 6 105.55 -162.52 REMARK 500 19 THR A 11 34.39 34.02 REMARK 500 19 GLN A 12 107.47 -38.66 REMARK 500 19 GLU A 14 172.37 -51.66 REMARK 500 19 PRO A 22 -178.51 -69.67 REMARK 500 19 PRO A 31 3.37 -69.73 REMARK 500 19 LYS A 58 103.15 -59.24 REMARK 500 19 VAL A 98 165.15 -41.98 REMARK 500 19 PRO A 113 1.89 -69.71 REMARK 500 19 SER A 114 160.57 -42.43 REMARK 500 20 SER A 2 109.63 -163.83 REMARK 500 20 PRO A 13 4.36 -69.84 REMARK 500 20 VAL A 15 50.88 -117.11 REMARK 500 20 GLN A 16 43.16 -98.97 REMARK 500 20 PRO A 22 -176.16 -69.81 REMARK 500 20 ASN A 23 50.27 39.33 REMARK 500 20 LYS A 58 98.98 -54.94 REMARK 500 20 VAL A 98 -179.80 -60.54 REMARK 500 20 THR A 100 160.37 -47.67 REMARK 500 20 PRO A 113 92.73 -69.79 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002001179.2 RELATED DB: TARGETDB
DBREF 1X5G A 8 110 UNP Q92859 NEO1_HUMAN 529 631
SEQADV 1X5G GLY A 1 UNP Q92859 CLONING ARTIFACT SEQADV 1X5G SER A 2 UNP Q92859 CLONING ARTIFACT SEQADV 1X5G SER A 3 UNP Q92859 CLONING ARTIFACT SEQADV 1X5G GLY A 4 UNP Q92859 CLONING ARTIFACT SEQADV 1X5G SER A 5 UNP Q92859 CLONING ARTIFACT SEQADV 1X5G SER A 6 UNP Q92859 CLONING ARTIFACT SEQADV 1X5G GLY A 7 UNP Q92859 CLONING ARTIFACT SEQADV 1X5G SER A 111 UNP Q92859 CLONING ARTIFACT SEQADV 1X5G GLY A 112 UNP Q92859 CLONING ARTIFACT SEQADV 1X5G PRO A 113 UNP Q92859 CLONING ARTIFACT SEQADV 1X5G SER A 114 UNP Q92859 CLONING ARTIFACT SEQADV 1X5G SER A 115 UNP Q92859 CLONING ARTIFACT SEQADV 1X5G GLY A 116 UNP Q92859 CLONING ARTIFACT
SEQRES 1 A 116 GLY SER SER GLY SER SER GLY ARG VAL GLU THR GLN PRO SEQRES 2 A 116 GLU VAL GLN LEU PRO GLY PRO ALA PRO ASN LEU ARG ALA SEQRES 3 A 116 TYR ALA ALA SER PRO THR SER ILE THR VAL THR TRP GLU SEQRES 4 A 116 THR PRO VAL SER GLY ASN GLY GLU ILE GLN ASN TYR LYS SEQRES 5 A 116 LEU TYR TYR MET GLU LYS GLY THR ASP LYS GLU GLN ASP SEQRES 6 A 116 VAL ASP VAL SER SER HIS SER TYR THR ILE ASN GLY LEU SEQRES 7 A 116 LYS LYS TYR THR GLU TYR SER PHE ARG VAL VAL ALA TYR SEQRES 8 A 116 ASN LYS HIS GLY PRO GLY VAL SER THR PRO ASP VAL ALA SEQRES 9 A 116 VAL ARG THR LEU SER ASP SER GLY PRO SER SER GLY
SHEET 1 A 3 ARG A 25 SER A 30 0 SHEET 2 A 3 SER A 33 THR A 37 -1 O THR A 37 N ARG A 25 SHEET 3 A 3 SER A 72 ILE A 75 -1 O ILE A 75 N ILE A 34 SHEET 1 B 4 VAL A 66 VAL A 68 0 SHEET 2 B 4 ASN A 50 GLU A 57 -1 N TYR A 51 O VAL A 68 SHEET 3 B 4 GLU A 83 TYR A 91 -1 O SER A 85 N MET A 56 SHEET 4 B 4 VAL A 105 ARG A 106 -1 O VAL A 105 N TYR A 84
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000