10 20 30 40 50 60 70 80 1X5F - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CELL ADHESION 15-MAY-05 1X5F
TITLE THE SOLUTION STRUCTURE OF THE FIRST FIBRONECTIN TYPE III TITLE 2 DOMAIN OF HUMAN NEOGENIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEOGENIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FN3 DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NEO1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P041213-02; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RGM BINDING, FIBRONECTIN TYPE III DOMAIN, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, CELL ADHESION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR N.TOCHIO,A.SASAGAWA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 1X5F 1 VERSN REVDAT 1 15-NOV-05 1X5F 0
JRNL AUTH N.TOCHIO,A.SASAGAWA,S.KOSHIBA,M.INOUE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL THE SOLUTION STRUCTURE OF THE FIRST FIBRONECTIN JRNL TITL 2 TYPE III DOMAIN OF HUMAN NEOGENIN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1X5F COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024401.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.9MM FN3 DOMAIN U-15N,13C; REMARK 210 20MM D-TRIS HCL; 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 167.79 -49.78 REMARK 500 1 ALA A 10 143.72 -38.18 REMARK 500 1 PRO A 18 -165.79 -69.75 REMARK 500 1 ALA A 20 154.97 -39.53 REMARK 500 1 SER A 70 -27.95 -39.15 REMARK 500 1 LYS A 97 -29.03 -39.31 REMARK 500 1 HIS A 98 -70.29 -74.91 REMARK 500 1 SER A 104 171.60 -48.77 REMARK 500 1 THR A 111 -179.39 -64.08 REMARK 500 1 PRO A 113 99.00 -69.76 REMARK 500 1 GLU A 114 160.59 -39.78 REMARK 500 1 SER A 118 104.59 -47.92 REMARK 500 2 PRO A 18 -178.28 -69.71 REMARK 500 2 THR A 57 136.66 -172.42 REMARK 500 2 GLU A 74 118.52 -37.66 REMARK 500 2 SER A 104 175.20 -49.40 REMARK 500 2 SER A 115 -61.11 -109.13 REMARK 500 3 ALA A 12 54.09 34.17 REMARK 500 3 PRO A 18 -168.40 -69.74 REMARK 500 3 ALA A 20 154.27 -40.56 REMARK 500 3 GLU A 59 -26.16 -39.08 REMARK 500 3 SER A 104 172.34 -49.61 REMARK 500 3 THR A 111 -177.30 -60.95 REMARK 500 3 PRO A 113 99.99 -69.79 REMARK 500 4 ALA A 10 139.92 -171.96 REMARK 500 4 PRO A 11 97.50 -69.81 REMARK 500 4 PRO A 18 -164.33 -69.76 REMARK 500 4 SER A 70 -35.27 -35.24 REMARK 500 4 SER A 104 177.14 -48.60 REMARK 500 5 GLU A 8 38.66 32.17 REMARK 500 5 HIS A 9 152.75 -37.18 REMARK 500 5 PRO A 18 -166.42 -69.78 REMARK 500 5 ALA A 20 154.06 -42.10 REMARK 500 5 SER A 70 -30.64 -36.97 REMARK 500 5 LYS A 97 -38.32 -34.51 REMARK 500 5 HIS A 98 -70.94 -68.96 REMARK 500 5 SER A 104 177.61 -48.43 REMARK 500 5 THR A 111 -178.31 -65.06 REMARK 500 5 PRO A 117 94.62 -69.79 REMARK 500 5 SER A 118 -67.95 -126.73 REMARK 500 5 SER A 119 122.26 -173.32 REMARK 500 6 PRO A 11 -178.98 -69.67 REMARK 500 6 PRO A 18 -164.42 -69.77 REMARK 500 6 ALA A 20 155.80 -42.18 REMARK 500 6 SER A 70 -28.07 -38.87 REMARK 500 6 HIS A 98 -70.64 -77.15 REMARK 500 6 SER A 104 173.26 -55.38 REMARK 500 7 PRO A 11 93.08 -69.78 REMARK 500 7 PRO A 18 -174.48 -69.71 REMARK 500 7 GLU A 59 108.05 -52.86 REMARK 500 7 SER A 70 -33.27 -35.23 REMARK 500 7 GLU A 74 120.65 -37.93 REMARK 500 7 SER A 104 171.05 -51.37 REMARK 500 7 THR A 111 -179.71 -60.91 REMARK 500 7 GLU A 114 49.89 -91.06 REMARK 500 8 SER A 3 127.01 -174.25 REMARK 500 8 GLU A 8 118.21 -161.35 REMARK 500 8 ALA A 20 152.63 -46.67 REMARK 500 8 SER A 70 -33.44 -36.34 REMARK 500 8 GLU A 74 122.83 -39.49 REMARK 500 8 ASN A 81 46.01 71.57 REMARK 500 8 SER A 104 171.95 -56.33 REMARK 500 8 GLU A 114 -175.27 -52.29 REMARK 500 8 SER A 118 136.75 -173.28 REMARK 500 9 SER A 5 43.30 -97.34 REMARK 500 9 THR A 13 47.25 -94.67 REMARK 500 9 PRO A 18 -166.66 -69.73 REMARK 500 9 GLU A 59 -29.16 -37.22 REMARK 500 9 SER A 70 -39.71 -34.47 REMARK 500 9 ASN A 81 43.76 72.36 REMARK 500 9 LYS A 97 -32.05 -36.47 REMARK 500 9 SER A 104 173.31 -57.01 REMARK 500 9 THR A 111 -177.77 -69.14 REMARK 500 9 PRO A 113 99.96 -69.74 REMARK 500 9 PRO A 117 1.99 -69.80 REMARK 500 9 SER A 118 107.51 -35.79 REMARK 500 10 SER A 3 -47.64 -132.09 REMARK 500 10 PRO A 18 -165.74 -69.76 REMARK 500 10 THR A 57 142.79 -170.29 REMARK 500 10 GLU A 74 118.71 -37.69 REMARK 500 10 ASN A 81 47.57 70.10 REMARK 500 10 SER A 104 176.75 -56.12 REMARK 500 11 SER A 3 42.10 70.14 REMARK 500 11 SER A 6 -55.97 -124.82 REMARK 500 11 GLU A 8 -51.13 -131.93 REMARK 500 11 PRO A 18 -177.59 -69.73 REMARK 500 11 ALA A 20 152.13 -34.85 REMARK 500 11 GLN A 76 147.64 -170.35 REMARK 500 11 HIS A 98 -70.55 -79.86 REMARK 500 11 SER A 104 177.04 -54.44 REMARK 500 11 PRO A 113 99.91 -69.80 REMARK 500 11 GLU A 114 39.02 -86.07 REMARK 500 12 ALA A 12 38.86 72.84 REMARK 500 12 ALA A 20 150.63 -34.14 REMARK 500 12 GLU A 59 -32.00 -39.95 REMARK 500 12 SER A 70 -31.71 -37.76 REMARK 500 12 GLU A 74 130.64 -35.07 REMARK 500 12 LYS A 97 -35.02 -34.25 REMARK 500 12 HIS A 98 -71.43 -67.95 REMARK 500 12 SER A 104 174.05 -47.09 REMARK 500 12 THR A 111 -178.82 -62.93 REMARK 500 12 GLU A 114 32.68 -98.93 REMARK 500 13 PRO A 18 -169.63 -69.77 REMARK 500 13 ALA A 20 152.55 -37.57 REMARK 500 13 THR A 57 148.99 -172.46 REMARK 500 13 ALA A 62 30.84 -95.87 REMARK 500 13 SER A 70 -32.21 -35.33 REMARK 500 13 GLU A 74 123.47 -35.69 REMARK 500 13 HIS A 98 -71.54 -77.70 REMARK 500 13 SER A 104 173.59 -48.83 REMARK 500 13 THR A 111 -177.02 -68.50 REMARK 500 13 GLU A 114 42.60 -96.89 REMARK 500 14 GLU A 8 77.17 -116.96 REMARK 500 14 PRO A 18 -169.90 -69.78 REMARK 500 14 ALA A 20 152.98 -48.76 REMARK 500 14 GLU A 59 -37.93 -35.91 REMARK 500 14 SER A 70 -33.69 -35.07 REMARK 500 14 GLN A 76 142.76 -174.62 REMARK 500 14 ASN A 81 47.11 72.48 REMARK 500 14 HIS A 98 -72.66 -76.13 REMARK 500 14 SER A 104 175.48 -54.19 REMARK 500 14 THR A 111 -179.45 -67.47 REMARK 500 14 PRO A 113 91.01 -69.73 REMARK 500 15 SER A 2 158.78 -48.70 REMARK 500 15 SER A 6 45.29 38.50 REMARK 500 15 PRO A 11 2.30 -69.79 REMARK 500 15 ALA A 12 97.90 -56.98 REMARK 500 15 PRO A 16 -176.06 -69.79 REMARK 500 15 PRO A 18 -172.83 -69.69 REMARK 500 15 GLU A 59 132.09 -38.96 REMARK 500 15 ILE A 61 99.75 -49.39 REMARK 500 15 SER A 70 -37.87 -34.47 REMARK 500 15 GLU A 74 124.97 -34.44 REMARK 500 15 HIS A 98 -71.25 -77.95 REMARK 500 15 THR A 111 -178.91 -67.93 REMARK 500 15 SER A 118 40.28 37.87 REMARK 500 16 PRO A 11 -176.13 -69.75 REMARK 500 16 PRO A 18 -175.04 -69.71 REMARK 500 16 ALA A 20 157.64 -39.15 REMARK 500 16 SER A 70 -37.56 -35.04 REMARK 500 16 GLU A 74 128.75 -37.23 REMARK 500 16 LYS A 97 -27.94 -38.00 REMARK 500 16 HIS A 98 -71.40 -74.52 REMARK 500 16 SER A 104 175.75 -48.49 REMARK 500 16 THR A 111 -179.37 -67.81 REMARK 500 16 SER A 115 139.35 -34.73 REMARK 500 17 PRO A 11 2.08 -69.77 REMARK 500 17 PRO A 18 -167.88 -69.73 REMARK 500 17 ALA A 20 151.06 -49.23 REMARK 500 17 SER A 70 -31.80 -35.79 REMARK 500 17 ASN A 81 48.18 71.52 REMARK 500 17 LYS A 97 -19.93 -46.91 REMARK 500 17 SER A 104 175.62 -56.08 REMARK 500 18 SER A 2 116.68 -162.67 REMARK 500 18 PRO A 18 -175.81 -69.66 REMARK 500 18 GLU A 59 -35.45 -38.50 REMARK 500 18 SER A 70 -37.95 -33.96 REMARK 500 18 ASN A 81 40.90 72.64 REMARK 500 18 GLU A 114 177.69 -48.25 REMARK 500 18 SER A 115 78.31 -104.09 REMARK 500 19 GLU A 8 93.97 -65.36 REMARK 500 19 ALA A 12 106.54 -169.31 REMARK 500 19 PRO A 18 -167.30 -69.71 REMARK 500 19 SER A 70 -31.01 -36.36 REMARK 500 19 LYS A 97 -27.11 -38.19 REMARK 500 19 HIS A 98 -72.41 -73.46 REMARK 500 19 SER A 104 172.07 -57.87 REMARK 500 19 PRO A 113 94.27 -69.79 REMARK 500 19 SER A 115 49.26 35.55 REMARK 500 20 PRO A 18 -172.72 -69.71 REMARK 500 20 ALA A 20 156.92 -41.89 REMARK 500 20 SER A 70 -39.65 -34.24 REMARK 500 20 GLU A 74 120.34 -34.33 REMARK 500 20 LYS A 97 -33.78 -35.49 REMARK 500 20 HIS A 98 -71.90 -69.78 REMARK 500 20 SER A 104 175.77 -51.88 REMARK 500 20 THR A 111 -178.42 -67.37 REMARK 500 20 GLU A 114 49.00 -91.16 REMARK 500 20 PRO A 117 89.26 -69.80 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002001179.1 RELATED DB: TARGETDB
DBREF 1X5F A 8 114 UNP Q92859 NEO1_HUMAN 429 535
SEQADV 1X5F GLY A 1 UNP Q92859 CLONING ARTIFACT SEQADV 1X5F SER A 2 UNP Q92859 CLONING ARTIFACT SEQADV 1X5F SER A 3 UNP Q92859 CLONING ARTIFACT SEQADV 1X5F GLY A 4 UNP Q92859 CLONING ARTIFACT SEQADV 1X5F SER A 5 UNP Q92859 CLONING ARTIFACT SEQADV 1X5F SER A 6 UNP Q92859 CLONING ARTIFACT SEQADV 1X5F GLY A 7 UNP Q92859 CLONING ARTIFACT SEQADV 1X5F SER A 115 UNP Q92859 CLONING ARTIFACT SEQADV 1X5F GLY A 116 UNP Q92859 CLONING ARTIFACT SEQADV 1X5F PRO A 117 UNP Q92859 CLONING ARTIFACT SEQADV 1X5F SER A 118 UNP Q92859 CLONING ARTIFACT SEQADV 1X5F SER A 119 UNP Q92859 CLONING ARTIFACT SEQADV 1X5F GLY A 120 UNP Q92859 CLONING ARTIFACT
SEQRES 1 A 120 GLY SER SER GLY SER SER GLY GLU HIS ALA PRO ALA THR SEQRES 2 A 120 THR GLY PRO LEU PRO SER ALA PRO ARG ASP VAL VAL ALA SEQRES 3 A 120 SER LEU VAL SER THR ARG PHE ILE LYS LEU THR TRP ARG SEQRES 4 A 120 THR PRO ALA SER ASP PRO HIS GLY ASP ASN LEU THR TYR SEQRES 5 A 120 SER VAL PHE TYR THR LYS GLU GLY ILE ALA ARG GLU ARG SEQRES 6 A 120 VAL GLU ASN THR SER HIS PRO GLY GLU MET GLN VAL THR SEQRES 7 A 120 ILE GLN ASN LEU MET PRO ALA THR VAL TYR ILE PHE ARG SEQRES 8 A 120 VAL MET ALA GLN ASN LYS HIS GLY SER GLY GLU SER SER SEQRES 9 A 120 ALA PRO LEU ARG VAL GLU THR GLN PRO GLU SER GLY PRO SEQRES 10 A 120 SER SER GLY
SHEET 1 A 3 ARG A 22 VAL A 29 0 SHEET 2 A 3 ILE A 34 ARG A 39 -1 O THR A 37 N VAL A 25 SHEET 3 A 3 GLN A 76 ILE A 79 -1 O VAL A 77 N LEU A 36 SHEET 1 B 4 ARG A 65 ASN A 68 0 SHEET 2 B 4 THR A 51 LYS A 58 -1 N TYR A 56 O ARG A 65 SHEET 3 B 4 VAL A 87 GLN A 95 -1 O MET A 93 N SER A 53 SHEET 4 B 4 SER A 100 SER A 103 -1 O GLY A 101 N ALA A 94 SHEET 1 C 4 ARG A 65 ASN A 68 0 SHEET 2 C 4 THR A 51 LYS A 58 -1 N TYR A 56 O ARG A 65 SHEET 3 C 4 VAL A 87 GLN A 95 -1 O MET A 93 N SER A 53 SHEET 4 C 4 LEU A 107 GLU A 110 -1 O LEU A 107 N PHE A 90
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000