10 20 30 40 50 60 70 80 1X4Y - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CELL ADHESION 15-MAY-05 1X4Y
TITLE SOLUTION STRUCTURE OF THE 3RD FIBRONECTIN TYPE III DOMAIN TITLE 2 FROM MOUSE BIREGIONAL CELL ADHESION MOLECULE-RELATED/DOWN- TITLE 3 REGULATED ONCOGENES (CDON) BINDING PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIREGIONAL CELL ADHESION MOLECULE-RELATED/DOWN- COMPND 3 REGULATED ONCOGENES (CDON)BINDING PROTEIN; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: FIBRONECTIN TYPE III (FN3) DOMAIN; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: BOC; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040719-12; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS FIBRONECTIN TYPE III, FN3, IMMUNOGLOBULIN-LIKE BETA- KEYWDS 2 SANDWICH FOLD, CELL ADHESION, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 3 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 4 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 5 RSGI
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 1X4Y 1 VERSN REVDAT 1 15-NOV-05 1X4Y 0
JRNL AUTH T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE 3RD FIBRONECTIN TYPE III JRNL TITL 2 DOMAIN FROM MOUSE BIREGIONAL CELL ADHESION JRNL TITL 3 MOLECULE-RELATED/DOWN-REGULATED ONCOGENES (CDON) JRNL TITL 4 BINDING PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1X4Y COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024384.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.84MM FN3 DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS-HCL; 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 10 -39.60 -35.50 REMARK 500 1 SER A 35 41.54 -92.11 REMARK 500 1 ASN A 37 32.26 -97.34 REMARK 500 1 ASN A 38 44.86 37.53 REMARK 500 1 ARG A 49 143.10 -174.69 REMARK 500 1 SER A 53 175.18 -52.84 REMARK 500 1 TYR A 59 124.42 -35.30 REMARK 500 1 GLU A 65 142.14 -39.49 REMARK 500 1 GLU A 79 43.50 34.90 REMARK 500 1 GLU A 91 -39.96 -35.04 REMARK 500 1 SER A 98 -177.69 -51.72 REMARK 500 1 THR A 105 -177.03 -67.11 REMARK 500 2 ALA A 34 -71.87 -52.12 REMARK 500 2 SER A 35 38.58 -85.86 REMARK 500 2 ARG A 49 142.72 -175.04 REMARK 500 2 SER A 53 -175.24 -55.54 REMARK 500 2 GLU A 65 147.71 -39.60 REMARK 500 2 GLU A 79 39.88 33.92 REMARK 500 2 GLU A 91 -39.01 -38.31 REMARK 500 3 SER A 2 173.10 -50.68 REMARK 500 3 SER A 35 41.36 -89.74 REMARK 500 3 ASN A 37 30.46 -90.71 REMARK 500 3 ASN A 38 38.87 39.22 REMARK 500 3 ARG A 49 142.96 -173.44 REMARK 500 3 SER A 53 152.36 -41.88 REMARK 500 3 SER A 57 -19.25 -48.58 REMARK 500 3 TYR A 59 123.30 -39.17 REMARK 500 3 GLU A 79 33.81 34.09 REMARK 500 4 SER A 5 133.32 -172.00 REMARK 500 4 ALA A 34 -72.49 -50.38 REMARK 500 4 SER A 53 162.74 -41.02 REMARK 500 4 TYR A 59 123.16 -39.15 REMARK 500 4 GLU A 79 43.06 34.34 REMARK 500 4 SER A 98 -175.10 -59.18 REMARK 500 5 PHE A 16 118.17 -160.55 REMARK 500 5 SER A 35 44.18 38.57 REMARK 500 5 ASN A 38 33.79 39.92 REMARK 500 5 SER A 53 150.95 -34.84 REMARK 500 5 TYR A 59 120.15 -35.83 REMARK 500 5 GLU A 79 43.77 34.11 REMARK 500 5 SER A 98 178.94 -55.53 REMARK 500 5 THR A 105 -179.65 -60.97 REMARK 500 6 ALA A 10 -36.88 -39.33 REMARK 500 6 PHE A 16 119.05 -160.44 REMARK 500 6 SER A 35 39.37 -89.71 REMARK 500 6 ASN A 37 33.11 -91.55 REMARK 500 6 ASN A 38 41.37 37.06 REMARK 500 6 SER A 57 -19.91 -47.74 REMARK 500 6 GLU A 65 143.40 -39.11 REMARK 500 6 GLU A 79 39.26 34.32 REMARK 500 6 GLU A 91 -33.00 -37.93 REMARK 500 6 GLU A 94 153.36 -47.40 REMARK 500 6 ARG A 108 40.90 -82.08 REMARK 500 6 SER A 109 101.25 -47.14 REMARK 500 6 SER A 112 133.10 -171.41 REMARK 500 7 SER A 35 40.45 -88.87 REMARK 500 7 SER A 53 168.13 -43.89 REMARK 500 7 ASP A 54 -61.73 -92.16 REMARK 500 7 TYR A 59 119.05 -35.08 REMARK 500 7 GLU A 79 37.54 34.46 REMARK 500 7 GLU A 96 158.85 -44.81 REMARK 500 7 SER A 98 171.94 -46.51 REMARK 500 8 SER A 3 42.47 -105.74 REMARK 500 8 SER A 35 45.69 -87.86 REMARK 500 8 ASN A 37 31.65 -92.62 REMARK 500 8 ASN A 38 41.48 37.87 REMARK 500 8 SER A 53 -176.60 -51.05 REMARK 500 8 TYR A 59 120.55 -36.48 REMARK 500 8 GLU A 79 40.21 34.18 REMARK 500 8 ASN A 99 175.14 -57.71 REMARK 500 8 THR A 105 -179.15 -67.29 REMARK 500 9 VAL A 9 -39.99 -130.04 REMARK 500 9 ALA A 10 -36.60 -38.41 REMARK 500 9 SER A 35 48.81 -75.78 REMARK 500 9 ARG A 49 142.79 -171.66 REMARK 500 9 SER A 53 153.55 -39.13 REMARK 500 9 TYR A 59 126.73 -37.14 REMARK 500 9 GLU A 79 44.04 33.75 REMARK 500 9 SER A 98 174.06 -53.83 REMARK 500 9 ARG A 108 89.49 -60.05 REMARK 500 9 PRO A 111 1.33 -69.72 REMARK 500 10 SER A 35 37.66 -94.42 REMARK 500 10 ASN A 37 32.63 -94.02 REMARK 500 10 ASN A 38 44.26 36.27 REMARK 500 10 SER A 53 151.40 -46.91 REMARK 500 10 TYR A 59 121.46 -34.92 REMARK 500 10 GLU A 79 42.32 34.25 REMARK 500 10 GLU A 91 -38.80 -36.51 REMARK 500 11 SER A 5 173.71 -50.49 REMARK 500 11 ALA A 34 -74.01 -49.48 REMARK 500 11 SER A 35 45.46 -83.62 REMARK 500 11 SER A 53 150.69 -35.54 REMARK 500 11 TYR A 59 122.17 -34.96 REMARK 500 11 GLU A 79 38.76 33.72 REMARK 500 11 ASN A 90 -177.84 -170.04 REMARK 500 11 SER A 98 -175.07 -54.12 REMARK 500 12 ALA A 10 -37.69 -33.03 REMARK 500 12 ALA A 34 -72.92 -59.56 REMARK 500 12 SER A 35 40.90 -83.08 REMARK 500 12 ARG A 49 141.60 -172.91 REMARK 500 12 SER A 53 -179.41 -52.31 REMARK 500 12 ASP A 54 -60.39 -94.66 REMARK 500 12 ASP A 56 -18.71 -49.82 REMARK 500 12 TYR A 59 121.71 -35.54 REMARK 500 12 GLU A 79 37.28 33.76 REMARK 500 12 GLU A 91 -33.56 -36.41 REMARK 500 12 ARG A 108 73.81 -64.65 REMARK 500 13 SER A 35 43.27 -87.27 REMARK 500 13 SER A 53 168.98 -46.12 REMARK 500 13 ASP A 54 -63.85 -105.22 REMARK 500 13 TYR A 59 121.99 -39.82 REMARK 500 13 GLU A 65 153.01 -42.10 REMARK 500 13 GLU A 79 40.95 34.10 REMARK 500 13 SER A 98 179.39 -49.41 REMARK 500 14 SER A 2 -50.22 -129.01 REMARK 500 14 SER A 5 37.37 -83.36 REMARK 500 14 SER A 6 104.66 -41.50 REMARK 500 14 ALA A 10 -36.63 -39.36 REMARK 500 14 ALA A 34 -73.26 -38.23 REMARK 500 14 SER A 35 49.80 -88.22 REMARK 500 14 ASN A 37 30.89 -89.70 REMARK 500 14 ASN A 38 41.43 37.80 REMARK 500 14 SER A 53 178.15 -49.45 REMARK 500 14 TYR A 59 119.74 -36.75 REMARK 500 14 GLU A 65 151.11 -35.07 REMARK 500 14 GLU A 79 44.68 34.08 REMARK 500 14 GLU A 91 -35.50 -34.54 REMARK 500 14 SER A 98 176.84 -59.35 REMARK 500 14 THR A 105 -177.78 -65.15 REMARK 500 15 SER A 3 40.72 72.66 REMARK 500 15 ALA A 10 -33.95 -36.61 REMARK 500 15 SER A 35 39.82 -92.10 REMARK 500 15 ASN A 37 32.98 -92.22 REMARK 500 15 ASN A 38 45.79 35.95 REMARK 500 15 SER A 53 172.37 -46.07 REMARK 500 15 TYR A 59 120.41 -34.33 REMARK 500 15 GLU A 79 44.92 34.45 REMARK 500 15 GLU A 91 -37.14 -39.37 REMARK 500 15 ASN A 99 175.04 -57.14 REMARK 500 15 PRO A 111 -175.35 -69.79 REMARK 500 16 VAL A 9 -40.42 -132.67 REMARK 500 16 ALA A 34 -73.58 -71.88 REMARK 500 16 SER A 53 178.18 -53.09 REMARK 500 16 TYR A 59 121.23 -38.65 REMARK 500 16 GLU A 79 41.96 33.18 REMARK 500 16 SER A 98 167.86 -45.20 REMARK 500 16 THR A 105 -179.32 -65.88 REMARK 500 16 ARG A 108 33.00 -84.72 REMARK 500 16 SER A 112 144.83 -38.56 REMARK 500 17 SER A 5 91.82 -67.07 REMARK 500 17 ALA A 10 -35.12 -34.85 REMARK 500 17 SER A 53 -179.48 -58.09 REMARK 500 17 TYR A 59 127.97 -34.54 REMARK 500 17 GLU A 79 42.26 34.85 REMARK 500 17 GLU A 91 -37.71 -35.94 REMARK 500 17 SER A 98 -178.91 -65.46 REMARK 500 17 ARG A 108 99.88 -64.79 REMARK 500 18 SER A 2 104.98 -48.66 REMARK 500 18 ALA A 10 -38.86 -39.29 REMARK 500 18 SER A 35 38.97 -85.62 REMARK 500 18 ARG A 49 142.15 -171.81 REMARK 500 18 SER A 53 -175.11 -61.50 REMARK 500 18 TYR A 59 120.43 -35.43 REMARK 500 18 GLU A 79 35.89 35.07 REMARK 500 18 GLU A 91 -35.13 -38.27 REMARK 500 18 SER A 98 174.92 -56.22 REMARK 500 19 VAL A 9 -38.45 -132.50 REMARK 500 19 ALA A 34 -75.10 -34.23 REMARK 500 19 ARG A 49 139.55 -174.53 REMARK 500 19 SER A 53 176.76 -51.23 REMARK 500 19 TYR A 59 129.64 -34.50 REMARK 500 19 GLU A 79 44.38 33.48 REMARK 500 19 GLU A 91 -33.47 -36.90 REMARK 500 19 ASN A 99 179.03 -56.04 REMARK 500 19 SER A 112 135.81 -38.78 REMARK 500 20 ALA A 34 -70.78 -44.57 REMARK 500 20 SER A 35 49.25 -86.62 REMARK 500 20 ARG A 49 140.83 -174.98 REMARK 500 20 SER A 53 169.29 -44.50 REMARK 500 20 TYR A 59 122.90 -39.25 REMARK 500 20 GLU A 65 155.50 -47.17 REMARK 500 20 GLU A 79 41.82 38.82 REMARK 500 20 SER A 98 173.45 -54.36 REMARK 500 20 ARG A 108 102.88 -57.59 REMARK 500 20 PRO A 111 1.79 -69.75 REMARK 500 20 SER A 112 -39.20 -35.60 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT008000800.2 RELATED DB: TARGETDB
DBREF 1X4Y A 8 108 UNP Q7TMJ3 Q7TMJ3_MOUSE 707 807
SEQADV 1X4Y GLY A 1 UNP Q7TMJ3 CLONING ARTIFACT SEQADV 1X4Y SER A 2 UNP Q7TMJ3 CLONING ARTIFACT SEQADV 1X4Y SER A 3 UNP Q7TMJ3 CLONING ARTIFACT SEQADV 1X4Y GLY A 4 UNP Q7TMJ3 CLONING ARTIFACT SEQADV 1X4Y SER A 5 UNP Q7TMJ3 CLONING ARTIFACT SEQADV 1X4Y SER A 6 UNP Q7TMJ3 CLONING ARTIFACT SEQADV 1X4Y GLY A 7 UNP Q7TMJ3 CLONING ARTIFACT SEQADV 1X4Y SER A 109 UNP Q7TMJ3 CLONING ARTIFACT SEQADV 1X4Y GLY A 110 UNP Q7TMJ3 CLONING ARTIFACT SEQADV 1X4Y PRO A 111 UNP Q7TMJ3 CLONING ARTIFACT SEQADV 1X4Y SER A 112 UNP Q7TMJ3 CLONING ARTIFACT SEQADV 1X4Y SER A 113 UNP Q7TMJ3 CLONING ARTIFACT SEQADV 1X4Y GLY A 114 UNP Q7TMJ3 CLONING ARTIFACT
SEQRES 1 A 114 GLY SER SER GLY SER SER GLY PRO VAL ALA GLY PRO TYR SEQRES 2 A 114 ILE THR PHE THR ASP ALA VAL ASN GLU THR THR ILE MET SEQRES 3 A 114 LEU LYS TRP MET TYR ILE PRO ALA SER ASN ASN ASN THR SEQRES 4 A 114 PRO ILE HIS GLY PHE TYR ILE TYR TYR ARG PRO THR ASP SEQRES 5 A 114 SER ASP ASN ASP SER ASP TYR LYS LYS ASP MET VAL GLU SEQRES 6 A 114 GLY ASP ARG TYR TRP HIS SER ILE SER HIS LEU GLN PRO SEQRES 7 A 114 GLU THR SER TYR ASP ILE LYS MET GLN CYS PHE ASN GLU SEQRES 8 A 114 GLY GLY GLU SER GLU PHE SER ASN VAL MET ILE CYS GLU SEQRES 9 A 114 THR LYS ALA ARG SER GLY PRO SER SER GLY
HELIX 1 1 ASN A 55 TYR A 59 5 5
SHEET 1 A 3 TYR A 13 ASP A 18 0 SHEET 2 A 3 ILE A 25 MET A 30 -1 O MET A 26 N ASP A 18 SHEET 3 A 3 TRP A 70 ILE A 73 -1 O ILE A 73 N ILE A 25 SHEET 1 B 4 ASP A 62 GLU A 65 0 SHEET 2 B 4 GLY A 43 TYR A 48 -1 N ILE A 46 O ASP A 62 SHEET 3 B 4 SER A 81 PHE A 89 -1 O GLN A 87 N TYR A 45 SHEET 4 B 4 MET A 101 GLU A 104 -1 O MET A 101 N ILE A 84
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000