10 20 30 40 50 60 70 80 1X45 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ENDOCYTOSIS/EXOCYTOSIS 13-MAY-05 1X45
TITLE SOLUTION STRUCTURE OF THE FIRST PDZ DOMAIN OF AMYLOID BETA TITLE 2 A4 PRECURSOR PROTEIN-BINDING FAMILY A, MEMBER 1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLOID BETA (A4) PRECURSOR PROTEIN-BINDING, COMPND 3 FAMILY A, MEMBER 1 (X11); COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: PDZ DOMAIN; COMPND 6 SYNONYM: NEURON-SPECIFIC XII PROTEIN, NEURONAL MUNC18-1- COMPND 7 INTERACTING PROTEIN 1, MINT-1, ADAPTER PROTEIN X11 ALPHA; COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APBA1, MINT1, X11; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050118-02; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS PDZ DOMAIN, AMYLOID BETA A4 PRECURSOR PROTEIN-BINDING KEYWDS 2 FAMILY A, MEMBER 1, NEURON-SPECIFIC XII PROTEIN, ADAPTER KEYWDS 3 PROTEIN XII ALPHA, NEURONAL MUNC 18-1-INTERACTING PROTEIN 1 KEYWDS 4 MINT-1, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 5 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 6 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 7 ENDOCYTOSIS/EXOCYTOSIS COMPLEX
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR X.R.QIN,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 1X45 1 VERSN REVDAT 1 13-NOV-05 1X45 0
JRNL AUTH X.R.QIN,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIRST PDZ DOMAIN OF JRNL TITL 2 AMYLOID BETA A4 PRECURSOR PROTEIN-BINDING FAMILY JRNL TITL 3 A, MEMBER 1 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT,P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1X45 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024355.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.55MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS- REMARK 210 HCL(PH7.0); 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9296, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 108.78 -39.84 REMARK 500 1 SER A 6 98.84 -42.97 REMARK 500 1 SER A 26 45.96 -78.27 REMARK 500 1 TRP A 28 96.27 -40.49 REMARK 500 1 PRO A 33 93.53 -69.74 REMARK 500 1 THR A 34 -75.60 -111.90 REMARK 500 1 VAL A 35 144.46 -175.61 REMARK 500 1 ILE A 54 106.90 -54.58 REMARK 500 1 SER A 85 -60.02 -95.23 REMARK 500 1 SER A 93 121.64 -38.75 REMARK 500 1 PRO A 95 88.43 -69.80 REMARK 500 2 SER A 5 49.81 -86.13 REMARK 500 2 SER A 26 31.84 -95.61 REMARK 500 2 TRP A 28 94.42 -63.30 REMARK 500 2 PRO A 33 90.32 -69.69 REMARK 500 2 THR A 34 -76.04 -110.97 REMARK 500 2 VAL A 35 140.29 -176.08 REMARK 500 2 HIS A 42 38.20 -82.65 REMARK 500 2 ILE A 54 105.38 -53.05 REMARK 500 2 VAL A 67 119.81 -39.29 REMARK 500 2 SER A 93 114.83 -36.64 REMARK 500 3 TRP A 28 -74.74 -121.18 REMARK 500 3 PRO A 33 87.28 -69.80 REMARK 500 3 THR A 34 -75.56 -104.50 REMARK 500 3 VAL A 35 140.96 -175.52 REMARK 500 3 HIS A 42 74.69 -67.06 REMARK 500 3 ILE A 54 106.67 -47.31 REMARK 500 3 SER A 93 115.18 -34.27 REMARK 500 4 SER A 26 37.50 -82.97 REMARK 500 4 TRP A 28 66.62 -110.47 REMARK 500 4 PRO A 33 86.37 -69.76 REMARK 500 4 THR A 34 -76.10 -105.91 REMARK 500 4 VAL A 35 142.39 -176.18 REMARK 500 4 HIS A 42 36.82 -89.13 REMARK 500 4 ILE A 54 107.38 -57.02 REMARK 500 4 VAL A 67 122.63 -37.54 REMARK 500 4 SER A 93 109.99 -38.92 REMARK 500 4 SER A 96 -51.67 -127.31 REMARK 500 5 SER A 26 30.43 -88.19 REMARK 500 5 SER A 30 -175.11 -60.96 REMARK 500 5 PRO A 33 84.47 -69.73 REMARK 500 5 THR A 34 -76.22 -104.56 REMARK 500 5 VAL A 35 142.78 -176.27 REMARK 500 5 MET A 41 151.85 -48.34 REMARK 500 5 ILE A 54 105.50 -49.32 REMARK 500 5 SER A 93 107.12 -40.22 REMARK 500 6 PRO A 33 87.47 -69.74 REMARK 500 6 THR A 34 -75.77 -107.23 REMARK 500 6 VAL A 35 141.54 -175.77 REMARK 500 6 HIS A 42 45.03 -84.24 REMARK 500 6 SER A 93 114.59 -37.93 REMARK 500 7 PRO A 33 86.55 -69.78 REMARK 500 7 THR A 34 -76.47 -108.28 REMARK 500 7 VAL A 35 138.89 -176.31 REMARK 500 7 ILE A 54 106.76 -46.94 REMARK 500 7 SER A 93 118.49 -37.22 REMARK 500 8 SER A 6 89.86 -64.30 REMARK 500 8 SER A 26 48.09 -76.04 REMARK 500 8 TRP A 28 94.93 -38.42 REMARK 500 8 SER A 30 -176.86 -65.13 REMARK 500 8 PRO A 33 85.24 -69.75 REMARK 500 8 THR A 34 -75.80 -103.59 REMARK 500 8 VAL A 35 145.22 -175.63 REMARK 500 8 HIS A 42 78.70 -68.72 REMARK 500 8 ILE A 54 106.73 -48.81 REMARK 500 8 SER A 93 121.76 -39.31 REMARK 500 8 PRO A 95 83.81 -69.74 REMARK 500 9 SER A 3 77.36 -112.72 REMARK 500 9 SER A 26 31.61 -85.06 REMARK 500 9 PRO A 33 83.31 -69.76 REMARK 500 9 THR A 34 -75.88 -104.55 REMARK 500 9 VAL A 35 140.31 -175.62 REMARK 500 9 ILE A 54 105.11 -53.47 REMARK 500 9 PRO A 95 97.07 -69.75 REMARK 500 10 PRO A 33 90.38 -69.67 REMARK 500 10 THR A 34 -76.25 -111.66 REMARK 500 10 VAL A 35 142.98 -176.21 REMARK 500 10 ILE A 54 105.92 -49.12 REMARK 500 10 SER A 85 -60.83 -94.43 REMARK 500 10 SER A 93 116.44 -34.84 REMARK 500 10 PRO A 95 -170.17 -69.74 REMARK 500 11 PRO A 33 87.01 -69.74 REMARK 500 11 THR A 34 -75.93 -108.79 REMARK 500 11 VAL A 35 143.23 -176.16 REMARK 500 11 HIS A 42 37.19 -86.18 REMARK 500 11 ILE A 54 106.83 -49.50 REMARK 500 11 VAL A 67 118.84 -38.16 REMARK 500 11 SER A 93 114.84 -35.58 REMARK 500 12 SER A 6 108.77 -40.96 REMARK 500 12 LYS A 15 145.16 -36.52 REMARK 500 12 SER A 26 48.47 -75.87 REMARK 500 12 TRP A 28 35.34 33.70 REMARK 500 12 SER A 30 144.41 -34.15 REMARK 500 12 PRO A 33 95.77 -69.79 REMARK 500 12 THR A 34 -75.90 -113.48 REMARK 500 12 VAL A 35 144.52 -175.81 REMARK 500 12 ILE A 54 107.69 -44.60 REMARK 500 12 SER A 93 121.32 -36.20 REMARK 500 13 SER A 6 88.00 -58.13 REMARK 500 13 LYS A 15 151.22 -34.48 REMARK 500 13 SER A 26 33.06 -89.34 REMARK 500 13 SER A 30 126.26 -38.52 REMARK 500 13 PRO A 33 92.34 -69.77 REMARK 500 13 THR A 34 -75.75 -113.65 REMARK 500 13 VAL A 35 141.90 -176.42 REMARK 500 13 HIS A 42 42.88 -82.63 REMARK 500 13 ILE A 54 106.81 -51.60 REMARK 500 13 VAL A 67 120.77 -37.23 REMARK 500 14 SER A 5 136.63 -171.17 REMARK 500 14 SER A 6 97.64 -59.79 REMARK 500 14 SER A 26 47.73 -77.61 REMARK 500 14 TRP A 28 93.31 -34.28 REMARK 500 14 PRO A 33 86.17 -69.81 REMARK 500 14 THR A 34 -75.99 -101.37 REMARK 500 14 VAL A 35 144.55 -176.01 REMARK 500 14 ILE A 54 106.41 -46.68 REMARK 500 14 VAL A 67 123.91 -35.82 REMARK 500 15 TRP A 28 42.16 32.95 REMARK 500 15 SER A 30 156.93 -47.84 REMARK 500 15 PRO A 33 88.79 -69.81 REMARK 500 15 THR A 34 -76.05 -105.46 REMARK 500 15 ILE A 54 106.20 -55.17 REMARK 500 15 SER A 93 118.45 -37.65 REMARK 500 15 PRO A 95 2.72 -69.72 REMARK 500 16 SER A 3 96.12 -64.91 REMARK 500 16 LYS A 15 145.98 -32.87 REMARK 500 16 SER A 26 48.04 -75.68 REMARK 500 16 TRP A 28 36.37 33.52 REMARK 500 16 SER A 30 144.62 -37.50 REMARK 500 16 PRO A 33 87.49 -69.83 REMARK 500 16 THR A 34 -76.58 -103.28 REMARK 500 16 VAL A 35 146.76 -177.00 REMARK 500 16 ILE A 54 108.41 -43.18 REMARK 500 16 SER A 93 117.15 -35.77 REMARK 500 16 PRO A 95 85.76 -69.76 REMARK 500 17 SER A 6 92.42 -61.33 REMARK 500 17 SER A 26 46.33 -77.12 REMARK 500 17 TRP A 28 37.44 33.40 REMARK 500 17 SER A 30 145.83 -37.64 REMARK 500 17 PRO A 33 87.85 -69.73 REMARK 500 17 THR A 34 -75.97 -107.28 REMARK 500 17 VAL A 35 143.84 -175.81 REMARK 500 17 HIS A 42 43.63 -85.86 REMARK 500 17 ILE A 54 106.01 -52.72 REMARK 500 17 VAL A 67 121.23 -35.52 REMARK 500 17 SER A 93 119.59 -34.94 REMARK 500 17 PRO A 95 2.57 -69.77 REMARK 500 17 SER A 96 135.35 -34.61 REMARK 500 18 PRO A 33 93.37 -69.77 REMARK 500 18 THR A 34 -76.49 -114.46 REMARK 500 18 VAL A 35 141.41 -176.26 REMARK 500 18 HIS A 42 76.47 -65.19 REMARK 500 18 ILE A 54 105.97 -49.05 REMARK 500 18 SER A 85 -62.37 -97.69 REMARK 500 18 SER A 93 114.35 -36.50 REMARK 500 19 SER A 26 45.28 -78.76 REMARK 500 19 TRP A 28 93.24 -34.33 REMARK 500 19 PRO A 33 85.87 -69.70 REMARK 500 19 THR A 34 -76.86 -100.20 REMARK 500 19 VAL A 35 144.96 -176.89 REMARK 500 19 HIS A 42 40.99 -89.91 REMARK 500 19 ILE A 54 106.53 -48.50 REMARK 500 20 PRO A 33 83.96 -69.78 REMARK 500 20 THR A 34 -76.37 -108.27 REMARK 500 20 VAL A 35 140.94 -176.32 REMARK 500 20 ILE A 54 105.31 -49.60 REMARK 500 20 SER A 93 114.71 -37.28 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO001000025.1 RELATED DB: TARGETDB
DBREF 1X45 A 8 92 UNP Q02410 APBA1_HUMAN 656 740
SEQADV 1X45 GLY A 1 UNP Q02410 CLONING ARTIFACT SEQADV 1X45 SER A 2 UNP Q02410 CLONING ARTIFACT SEQADV 1X45 SER A 3 UNP Q02410 CLONING ARTIFACT SEQADV 1X45 GLY A 4 UNP Q02410 CLONING ARTIFACT SEQADV 1X45 SER A 5 UNP Q02410 CLONING ARTIFACT SEQADV 1X45 SER A 6 UNP Q02410 CLONING ARTIFACT SEQADV 1X45 GLY A 7 UNP Q02410 CLONING ARTIFACT SEQADV 1X45 SER A 93 UNP Q02410 CLONING ARTIFACT SEQADV 1X45 GLY A 94 UNP Q02410 CLONING ARTIFACT SEQADV 1X45 PRO A 95 UNP Q02410 CLONING ARTIFACT SEQADV 1X45 SER A 96 UNP Q02410 CLONING ARTIFACT SEQADV 1X45 SER A 97 UNP Q02410 CLONING ARTIFACT SEQADV 1X45 GLY A 98 UNP Q02410 CLONING ARTIFACT
SEQRES 1 A 98 GLY SER SER GLY SER SER GLY ASP VAL PHE ILE GLU LYS SEQRES 2 A 98 GLN LYS GLY GLU ILE LEU GLY VAL VAL ILE VAL GLU SER SEQRES 3 A 98 GLY TRP GLY SER ILE LEU PRO THR VAL ILE ILE ALA ASN SEQRES 4 A 98 MET MET HIS GLY GLY PRO ALA GLU LYS SER GLY LYS LEU SEQRES 5 A 98 ASN ILE GLY ASP GLN ILE MET SER ILE ASN GLY THR SER SEQRES 6 A 98 LEU VAL GLY LEU PRO LEU SER THR CYS GLN SER ILE ILE SEQRES 7 A 98 LYS GLY LEU LYS ASN GLN SER ARG VAL LYS LEU ASN ILE SEQRES 8 A 98 VAL SER GLY PRO SER SER GLY
HELIX 1 1 GLY A 44 GLY A 50 1 7 HELIX 2 2 PRO A 70 GLY A 80 1 11
SHEET 1 A 4 ASP A 8 GLU A 12 0 SHEET 2 A 4 ARG A 86 VAL A 92 -1 O LEU A 89 N VAL A 9 SHEET 3 A 4 GLN A 57 ILE A 61 -1 N GLN A 57 O VAL A 92 SHEET 4 A 4 THR A 64 SER A 65 -1 O THR A 64 N ILE A 61 SHEET 1 B 2 VAL A 21 VAL A 24 0 SHEET 2 B 2 ILE A 36 MET A 40 -1 O ASN A 39 N VAL A 22
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000