1X2O - Header Asymmetric Unit

HEADER DNA 26-APR-05 1X2O

TITLE NMR SOLUTION STRUCTURES OF A DNA DODECAMER CONTAINING A TITLE 2 TANDEM GT MISMATCHES USING NOE AND RESIDUAL DIPOLAR TITLE 3 COUPLINGS

COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*AP*CP*TP*GP*TP*AP*CP*AP*GP*TP*C)-3'; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES

KEYWDS NMR, RDC, DEOXYRIBONUCLEIC ACID, LIQUID CRYSTAL, DNA

EXPDTA SOLUTION NMR

AUTHOR F.ALVAREZ-SALGADO,H.DESVAUX,Y.BOULARD

REVDAT 3 24-FEB-09 1X2O 1 VERSN REVDAT 2 05-DEC-06 1X2O 1 JRNL REVDAT 1 01-AUG-06 1X2O 0

JRNL AUTH F.ALVAREZ-SALGADO,H.DESVAUX,Y.BOULARD JRNL TITL NMR ASSESSMENT OF THE GLOBAL SHAPE OF A JRNL TITL 2 NON-LABELLED DNA DODECAMER CONTAINING A TANDEM OF JRNL TITL 3 G--T MISMATCHES JRNL REF MAGN.RESON.CHEM. V. 44 1081 2006 JRNL REFN ISSN 0749-1581 JRNL PMID 16972306 JRNL DOI 10.1002/MRC.1902

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1X2O COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-APR-05. REMARK 100 THE RCSB ID CODE IS RCSB024302.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 10MM PHOSPHATE BUFFER, 50MM REMARK 210 NACL, 0.2MM EDTA REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5MM DNA, 10MM PHOSPHATE REMARK 210 BUFFER, 50MM NACL, 0.5MM EDTA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY, COSY, TOCSY, HSQC 1H- REMARK 210 13C REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 600 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.5, CURVES 5.3, REMARK 210 MOLMOL 2.6 REMARK 210 METHOD USED : SIMULATED ANNEALING, ENERGY REMARK 210 MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: RDCS WERE MEASURED IN BICELLES SDS SOLUTION

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1X2S RELATED DB: PDB REMARK 900 RDCS WERE MEASURED IN PF1 SOLUTION REMARK 900 RELATED ID: 1X2U RELATED DB: PDB REMARK 900 RDCS WERE MEASURED IN PEG SOLUTION REMARK 900 RELATED ID: 1X2V RELATED DB: PDB REMARK 900 THIS STRUCTURE IS THE WILD DNA SEQUENCE (WITHOUT MISMATCH) REMARK 900 THAT SERVES AS REFERENCE REMARK 900 RELATED ID: 1X2X RELATED DB: PDB REMARK 900 RDCS WERE MEASURED IN BICELLES SDS SOLUTION, A TANDEM GT REMARK 900 MISMATCHES REMARK 900 RELATED ID: 1X2Y RELATED DB: PDB REMARK 900 RDCS WERE MEASURED IN PF1 SOLUTION, A TANDEM GT MISMATCHES REMARK 900 RELATED ID: 1X2Z RELATED DB: PDB REMARK 900 RDCS WERE MEASURED IN PEG SOLUTION, A TANDEM GT MISMATCHES REMARK 900 RELATED ID: 1X30 RELATED DB: PDB REMARK 900 THIS STRUCTURE CONTAINS A TANDEM GT MISMATCHES

DBREF 1X2O A 1 12 PDB 1X2O 1X2O 1 12 DBREF 1X2O B 13 24 PDB 1X2O 1X2O 13 24

SEQRES 1 A 12 DG DA DC DT DG DT DA DC DA DG DT DC SEQRES 1 B 12 DG DA DC DT DG DT DA DC DA DG DT DC

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000