10 20 30 40 50 60 70 80 1X1J - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LYASE 04-APR-05 1X1J
TITLE CRYSTAL STRUCTURE OF XANTHAN LYASE (N194A) WITH A SUBSTRATE.
COMPND MOL_ID: 1; COMPND 2 MOLECULE: XANTHAN LYASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 26-777; COMPND 5 EC: 4.2.2.12; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SP. GL1; SOURCE 3 ORGANISM_TAXID: 84635; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET17B
KEYWDS ALPHA/ALPHA BARREL, BETA SANDWICH, LYASE
EXPDTA X-RAY DIFFRACTION
AUTHOR Y.MARUYAMA,W.HASHIMOTO,B.MIKAMI,K.MURATA
REVDAT 2 24-FEB-09 1X1J 1 VERSN REVDAT 1 19-JUL-05 1X1J 0
JRNL AUTH Y.MARUYAMA,W.HASHIMOTO,B.MIKAMI,K.MURATA JRNL TITL CRYSTAL STRUCTURE OF BACILLUS SP. GL1 XANTHAN JRNL TITL 2 LYASE COMPLEXED WITH A SUBSTRATE: INSIGHTS INTO JRNL TITL 3 THE ENZYME REACTION MECHANISM JRNL REF J.MOL.BIOL. V. 350 974 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15979090 JRNL DOI 10.1016/J.JMB.2005.05.055
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1736746.390 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.6 REMARK 3 NUMBER OF REFLECTIONS : 36639 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1827 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5090 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 291 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5691 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 478 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.34000 REMARK 3 B22 (A**2) : -2.87000 REMARK 3 B33 (A**2) : 4.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.69000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.22 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.73 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.130 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.680 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.790 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.400 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 68.04 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : CIS_PEPTIDE.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : 2SAC.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1X1J COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-APR-05. REMARK 100 THE RCSB ID CODE IS RCSB024261.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36768 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.22000 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS 1.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, AMMONIUM FORMATE, SODIUM REMARK 280 BICINE, PH 9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.01300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 161 CD1 REMARK 470 VAL A 666 CG1 CG2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 46 89.01 -67.66 REMARK 500 ASP A 47 101.05 -45.34 REMARK 500 ARG A 77 151.75 -47.83 REMARK 500 LEU A 84 23.34 -140.26 REMARK 500 ASN A 87 -6.95 -58.51 REMARK 500 SER A 135 -56.69 -143.14 REMARK 500 SER A 138 12.19 -69.67 REMARK 500 LEU A 190 -155.17 -79.70 REMARK 500 ILE A 227 -111.76 -125.40 REMARK 500 THR A 247 -49.23 71.08 REMARK 500 SER A 271 127.21 -38.74 REMARK 500 LEU A 389 -179.20 -176.65 REMARK 500 SER A 414 -154.50 -164.41 REMARK 500 TRP A 431 -65.30 -22.92 REMARK 500 ALA A 435 62.79 -113.98 REMARK 500 ASN A 442 -157.08 -138.88 REMARK 500 SER A 449 -161.73 -104.65 REMARK 500 SER A 499 95.14 -166.20 REMARK 500 LEU A 505 125.62 -173.76 REMARK 500 ALA A 507 164.15 179.56 REMARK 500 PHE A 514 -150.55 -109.79 REMARK 500 ASN A 610 79.82 -151.31 REMARK 500 ASN A 647 23.96 44.48 REMARK 500 ASP A 659 74.13 -153.67 REMARK 500 ASN A 667 64.65 -155.12 REMARK 500 ASP A 689 50.47 -93.83 REMARK 500 ASP A 695 -125.29 55.23 REMARK 500 ALA A 711 123.27 -29.21 REMARK 500 ASP A 712 19.02 49.65 REMARK 500 GLU A 713 -55.67 -123.41 REMARK 500 REMARK 500 REMARK: NULL
REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 46D A 2001
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2000 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 516 OD1 REMARK 620 2 HOH A3252 O 80.6 REMARK 620 3 HOH A3298 O 100.5 77.1 REMARK 620 4 GLU A 517 OE2 78.1 130.7 150.4 REMARK 620 5 ASP A 515 OD2 68.8 138.3 81.3 70.6 REMARK 620 6 GLU A 517 OE1 96.3 88.8 155.9 50.7 121.2 REMARK 620 7 GLU A 676 OE1 164.8 113.2 77.7 96.0 96.1 90.4 REMARK 620 N 1 2 3 4 5 6
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 46D A 2001 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2000
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1J0M RELATED DB: PDB REMARK 900 RELATED ID: 1J0N RELATED DB: PDB REMARK 900 RELATED ID: 1X1H RELATED DB: PDB REMARK 900 THE SAME PROTEIN REMARK 900 RELATED ID: 1X1I RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH A PRODUCT
DBREF 1X1J A 26 777 GB 12313651 BAB21059 26 777
SEQADV 1X1J ALA A 194 GB 12313651 ASN 194 ENGINEERED
SEQRES 1 A 752 SER ASP GLU PHE ASP ALA LEU ARG ILE LYS TRP ALA THR SEQRES 2 A 752 LEU LEU THR GLY GLY PRO ALA LEU ASP PRO ALA ASP SER SEQRES 3 A 752 ASP ILE ALA ALA ARG THR ASP LYS LEU ALA GLN ASP ALA SEQRES 4 A 752 ASN ASP TYR TRP GLU ASP MET ASP LEU SER SER SER ARG SEQRES 5 A 752 THR TYR ILE TRP TYR ALA LEU ARG GLY ASN GLY THR SER SEQRES 6 A 752 ASP ASN VAL ASN ALA VAL TYR GLU ARG LEU ARG THR MET SEQRES 7 A 752 ALA LEU ALA ALA THR THR VAL GLY SER SER LEU TYR GLY SEQRES 8 A 752 ASN ALA ASP LEU LYS GLU ASP ILE LEU ASP ALA LEU ASP SEQRES 9 A 752 TRP LEU TYR VAL ASN SER TYR ASN SER THR ARG SER ARG SEQRES 10 A 752 SER ALA TYR ASN TRP TRP HIS TRP GLN LEU GLY ILE PRO SEQRES 11 A 752 MET SER LEU ASN ASP ILE ALA VAL LEU LEU TYR ASP ASP SEQRES 12 A 752 ILE SER ALA ALA ARG MET ALA THR TYR MET ASP THR ILE SEQRES 13 A 752 ASP TYR PHE THR PRO SER ILE GLY LEU THR GLY ALA ALA SEQRES 14 A 752 ARG ALA TRP GLN ALA ILE VAL VAL GLY VAL ARG ALA VAL SEQRES 15 A 752 ILE VAL LYS ASP ALA VAL LYS LEU ALA ALA ALA ARG ASN SEQRES 16 A 752 GLY LEU SER GLY THR GLY ILE PHE PRO TYR ALA THR GLY SEQRES 17 A 752 GLY ASP GLY PHE TYR ALA ASP GLY SER PHE VAL GLN HIS SEQRES 18 A 752 THR THR PHE ALA TYR THR GLY GLY TYR GLY SER SER VAL SEQRES 19 A 752 LEU GLU THR THR ALA ASN LEU MET TYR LEU LEU SER GLY SEQRES 20 A 752 SER THR TRP SER VAL SER ASP PRO ASN GLN SER ASN VAL SEQRES 21 A 752 TRP GLN TRP ILE TYR GLU ALA TYR ARG PRO LEU LEU TYR SEQRES 22 A 752 LYS GLY ALA MET MET ASP MET VAL ARG GLY ARG GLU ILE SEQRES 23 A 752 SER ARG SER TYR ALA GLN ASP HIS ALA VAL GLY HIS GLY SEQRES 24 A 752 ILE VAL ALA SER ILE VAL ARG LEU ALA GLN PHE ALA PRO SEQRES 25 A 752 ALA PRO HIS ALA ALA ALA PHE LYS GLN ILE ALA LYS ARG SEQRES 26 A 752 VAL ILE GLN GLU ASP THR PHE SER SER PHE TYR GLY ASP SEQRES 27 A 752 VAL SER THR ASP THR ILE ARG LEU ALA LYS ALA ILE VAL SEQRES 28 A 752 ASP ASP PRO SER ILE ALA PRO ALA ALA ALA PRO ASN LEU SEQRES 29 A 752 TYR LYS GLN TYR ALA ALA MET ASP ARG ALA VAL LEU GLN SEQRES 30 A 752 ARG PRO GLY PHE ALA LEU GLY LEU ALA LEU TYR SER THR SEQRES 31 A 752 ARG ILE SER SER TYR GLU SER ILE ASN SER GLU ASN GLY SEQRES 32 A 752 ARG GLY TRP TYR THR GLY ALA GLY ALA THR TYR LEU TYR SEQRES 33 A 752 ASN GLN ASP LEU ALA GLN TYR SER GLU ASP TYR TRP PRO SEQRES 34 A 752 THR VAL ASP ALA TYR ARG ILE PRO GLY THR THR VAL ALA SEQRES 35 A 752 SER GLY THR PRO ILE ALA SER GLY THR GLY THR SER SER SEQRES 36 A 752 TRP THR GLY GLY VAL SER LEU ALA GLY GLN TYR GLY ALA SEQRES 37 A 752 SER GLY MET ASP LEU SER TYR GLY ALA TYR ASN LEU SER SEQRES 38 A 752 ALA ARG LYS SER TRP PHE MET PHE ASP ASP GLU ILE VAL SEQRES 39 A 752 ALA LEU GLY SER GLY ILE SER SER THR ALA GLY ILE PRO SEQRES 40 A 752 ILE GLU THR VAL VAL ASP ASN ARG LYS LEU ASN GLY ALA SEQRES 41 A 752 GLY ASP ASN ALA TRP THR ALA ASN GLY ALA ALA LEU SER SEQRES 42 A 752 THR GLY LEU GLY VAL ALA GLN THR LEU THR GLY VAL ASN SEQRES 43 A 752 TRP VAL HIS LEU ALA GLY ASN THR ALA ASP GLY SER ASP SEQRES 44 A 752 ILE GLY TYR TYR PHE PRO GLY GLY ALA THR LEU GLN THR SEQRES 45 A 752 LYS ARG GLU ALA ARG THR GLY THR TRP LYS GLN ILE ASN SEQRES 46 A 752 ASN ARG PRO ALA THR PRO SER THR ALA VAL THR ARG ASN SEQRES 47 A 752 TYR GLU THR MET TRP ILE ASP HIS GLY THR ASN PRO SER SEQRES 48 A 752 GLY ALA SER TYR GLY TYR VAL LEU LEU PRO ASN LYS THR SEQRES 49 A 752 SER ALA GLN VAL GLY ALA TYR ALA ALA ASP PRO ALA ILE SEQRES 50 A 752 GLU ILE VAL VAL ASN THR SER GLY VAL GLN SER VAL LYS SEQRES 51 A 752 GLU LYS THR LEU GLY LEU VAL GLY ALA ASN PHE TRP THR SEQRES 52 A 752 ASP THR THR GLN THR ALA ASP LEU ILE THR SER ASN LYS SEQRES 53 A 752 LYS ALA SER VAL MET THR ARG GLU ILE ALA ASP GLU ARG SEQRES 54 A 752 LEU GLU ALA SER VAL SER ASP PRO THR GLN ALA ASN ASN SEQRES 55 A 752 GLY THR ILE ALA ILE GLU LEU ALA ARG SER ALA GLU GLY SEQRES 56 A 752 TYR SER ALA ASP PRO GLY ILE THR VAL THR GLN LEU ALA SEQRES 57 A 752 PRO THR ILE LYS PHE THR VAL ASN VAL ASN GLY ALA LYS SEQRES 58 A 752 GLY LYS SER PHE HIS ALA SER PHE GLN LEU GLY
HET 46D A2001 28 HET CA A2000 1
HETNAM 46D (4AR,6R,7S,8R,8AR)-8-((5R,6R)-3-CARBOXY-TETRAHYDRO-4, HETNAM 2 46D 5,6-TRIHYDROXY-2H-PYRAN-2-YLOXY)-HEXAHYDRO-6,7- HETNAM 3 46D DIHYDROXY-2-METHYLPYRANO[3,2-D][1,3]DIOXINE-2- HETNAM 4 46D CARBOXYLIC ACID) HETNAM CA CALCIUM ION
HETSYN 46D 4,6-O-(1-CARBOXYETHYLIDENE)-BETA-D-MANNOSE-(1->4)- HETSYN 2 46D BETA-D-GLUCURONIC ACID
FORMUL 2 46D C15 H22 O14 FORMUL 3 CA CA 2+ FORMUL 4 HOH *478(H2 O)
HELIX 1 1 ASP A 27 GLY A 42 1 16 HELIX 2 2 ASP A 50 GLU A 69 1 20 HELIX 3 3 TRP A 81 ARG A 85 5 5 HELIX 4 4 THR A 89 THR A 109 1 21 HELIX 5 5 ASN A 117 SER A 135 1 19 HELIX 6 6 ASN A 146 LEU A 152 1 7 HELIX 7 7 LEU A 152 LEU A 165 1 14 HELIX 8 8 TYR A 166 ILE A 169 5 4 HELIX 9 9 SER A 170 THR A 185 1 16 HELIX 10 10 THR A 191 LYS A 210 1 20 HELIX 11 11 ASP A 211 LEU A 222 1 12 HELIX 12 12 GLY A 254 SER A 271 1 18 HELIX 13 13 ASP A 279 GLN A 282 5 4 HELIX 14 14 SER A 283 ALA A 292 1 10 HELIX 15 15 TYR A 293 PRO A 295 5 3 HELIX 16 16 ASP A 304 ALA A 316 5 13 HELIX 17 17 GLN A 317 GLN A 334 1 18 HELIX 18 18 PRO A 339 ASP A 355 1 17 HELIX 19 19 SER A 359 VAL A 364 5 6 HELIX 20 20 SER A 365 ASP A 377 1 13 HELIX 21 21 ALA A 394 MET A 396 5 3 HELIX 22 22 THR A 605 ILE A 609 5 5 HELIX 23 23 THR A 649 ASP A 659 1 11
SHEET 1 A 3 GLY A 236 PHE A 237 0 SHEET 2 A 3 PHE A 243 GLN A 245 -1 O VAL A 244 N GLY A 236 SHEET 3 A 3 PHE A 249 ALA A 250 -1 O PHE A 249 N GLN A 245 SHEET 1 B 2 LEU A 297 TYR A 298 0 SHEET 2 B 2 ALA A 301 MET A 302 -1 O ALA A 301 N TYR A 298 SHEET 1 C 4 LEU A 389 TYR A 393 0 SHEET 2 C 4 ARG A 398 ARG A 403 -1 O GLN A 402 N LEU A 389 SHEET 3 C 4 PHE A 406 ALA A 411 -1 O PHE A 406 N ARG A 403 SHEET 4 C 4 ALA A 437 TYR A 441 -1 O TYR A 441 N ALA A 407 SHEET 1 D 9 THR A 465 ALA A 467 0 SHEET 2 D 9 PRO A 532 LYS A 541 -1 O GLU A 534 N VAL A 466 SHEET 3 D 9 VAL A 620 THR A 633 -1 O HIS A 631 N ILE A 533 SHEET 4 D 9 ILE A 585 GLY A 604 -1 N GLN A 596 O TRP A 628 SHEET 5 D 9 ALA A 638 PRO A 646 -1 O LEU A 645 N GLY A 586 SHEET 6 D 9 ILE A 518 SER A 526 -1 N ILE A 518 O LEU A 644 SHEET 7 D 9 SER A 506 MET A 513 -1 N SER A 506 O SER A 526 SHEET 8 D 9 TYR A 491 SER A 499 -1 N SER A 494 O TRP A 511 SHEET 9 D 9 THR A 482 LEU A 487 -1 N LEU A 487 O TYR A 491 SHEET 1 E 7 THR A 465 ALA A 467 0 SHEET 2 E 7 PRO A 532 LYS A 541 -1 O GLU A 534 N VAL A 466 SHEET 3 E 7 VAL A 620 THR A 633 -1 O HIS A 631 N ILE A 533 SHEET 4 E 7 ILE A 585 GLY A 604 -1 N GLN A 596 O TRP A 628 SHEET 5 E 7 VAL A 563 LEU A 575 -1 N VAL A 570 O ALA A 593 SHEET 6 E 7 TRP A 550 ALA A 552 -1 N THR A 551 O HIS A 574 SHEET 7 E 7 ALA A 555 ALA A 556 -1 O ALA A 555 N ALA A 552 SHEET 1 F 7 ILE A 662 ASN A 667 0 SHEET 2 F 7 VAL A 671 GLU A 676 -1 O LYS A 675 N GLU A 663 SHEET 3 F 7 LEU A 681 PHE A 686 -1 O LEU A 681 N GLU A 676 SHEET 4 F 7 ALA A 703 ILE A 710 -1 O VAL A 705 N ALA A 684 SHEET 5 F 7 ARG A 714 SER A 720 -1 O GLU A 716 N ARG A 708 SHEET 6 F 7 SER A 769 LEU A 776 -1 O PHE A 774 N LEU A 715 SHEET 7 F 7 ALA A 738 ALA A 743 -1 N GLU A 739 O GLN A 775 SHEET 1 G 5 GLN A 692 ALA A 694 0 SHEET 2 G 5 ILE A 697 SER A 699 -1 O ILE A 697 N ALA A 694 SHEET 3 G 5 THR A 729 LEU A 734 -1 O GLU A 733 N THR A 698 SHEET 4 G 5 ILE A 756 ASN A 761 -1 O PHE A 758 N ILE A 732 SHEET 5 G 5 ILE A 747 GLN A 751 -1 N GLN A 751 O LYS A 757
LINK CA CA A2000 OD1 ASP A 516 1555 1555 2.26 LINK CA CA A2000 O HOH A3252 1555 1555 2.37 LINK CA CA A2000 O HOH A3298 1555 1555 2.78 LINK CA CA A2000 OE2 GLU A 517 1555 1555 2.56 LINK CA CA A2000 OD2 ASP A 515 1555 1555 2.54 LINK CA CA A2000 OE1 GLU A 517 1555 1555 2.58 LINK CA CA A2000 OE1 GLU A 676 1555 1555 2.42
CISPEP 1 TYR A 145 ASN A 146 0 -0.36 CISPEP 2 ALA A 338 PRO A 339 0 -0.08 CISPEP 3 ALA A 753 PRO A 754 0 0.57
SITE 1 AC1 16 ASN A 146 TRP A 147 TRP A 148 HIS A 149 SITE 2 AC1 16 TRP A 197 HIS A 246 TYR A 255 ARG A 309 SITE 3 AC1 16 ARG A 313 TYR A 315 ASN A 424 ARG A 612 SITE 4 AC1 16 HOH A3011 HOH A3024 HOH A3121 HOH A3229 SITE 1 AC2 6 ASP A 515 ASP A 516 GLU A 517 GLU A 676 SITE 2 AC2 6 HOH A3252 HOH A3298
CRYST1 53.747 90.026 74.249 90.00 91.06 90.00 P 1 21 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.018606 0.000000 0.000346 0.00000
SCALE2 0.000000 0.011108 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013471 0.00000