10 20 30 40 50 60 70 80 1X0O - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION 25-MAR-05 1X0O
TITLE HUMAN ARNT C-TERMINAL PAS DOMAIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL PAS DOMAIN; COMPND 5 SYNONYM: ARNT PROTEIN, DIOXIN RECEPTOR, NUCLEAR COMPND 6 TRANSLOCATOR, HYPOXIA-INDUCIBLE FACTOR 1 BETA, HIF-1 BETA
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606
KEYWDS PAS, MIXED ALPHA-BETA FOLD, HYPOXIA, ARYL HYDROCARBON KEYWDS 2 RECEPTOR NUCLEAR TRANSLOCATOR, ARNT, TRANSCRIPTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR P.B.CARD,P.J.ERBEL,K.H.GARDNER
REVDAT 2 24-FEB-09 1X0O 1 VERSN REVDAT 1 25-OCT-05 1X0O 0
JRNL AUTH P.B.CARD,P.J.ERBEL,K.H.GARDNER JRNL TITL STRUCTURAL BASIS OF ARNT PAS-B DIMERIZATION: USE JRNL TITL 2 OF A COMMON BETA-SHEET INTERFACE FOR HETERO- AND JRNL TITL 3 HOMODIMERIZATION. JRNL REF J.MOL.BIOL. V. 353 664 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16181639 JRNL DOI 10.1016/J.JMB.2005.08.043
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1X0O COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-MAR-05. REMARK 100 THE RCSB ID CODE IS RCSB024231.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 310 REMARK 210 PH : 6.5; 6.6 REMARK 210 IONIC STRENGTH : 17MM NACL; 17MM NACL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM HARNT C-TERM PAS DOMAIN U REMARK 210 -15N,13C; 50MM TRIS BUFFER; REMARK 210 17MM NACL, 5MM DTT; 0.478MM REMARK 210 HARNT C-TERM PAS DOMAIN U-15N; REMARK 210 50MM TRIS BUFFER; 17MM NACL, REMARK 210 5MM DTT REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N_13C-SEPERATED NOESY, REMARK 210 3D_15N-SEPARATED_NOESY, HNHA, REMARK 210 3D_HNCACB, 3D_CBCACONH, 3D_ REMARK 210 HNCO, 3D_15N-SEPERATED TOCSY, REMARK 210 3D_HCCH_TOCSY, HBCBCGCDHD, REMARK 210 IPAP_HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.3, NMRVIEW 5.2.2, REMARK 210 ARIA 1.2, CNS 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 5 REMARK 210 REMARK 210 REMARK: USED STANDARD 2D AND 3D HOMONUCLEAR AND HETERONUCLEAR- REMARK 210 EDITED TECHNIQUES
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 65.40 60.08 REMARK 500 1 VAL A 6 122.98 74.37 REMARK 500 1 LYS A 68 98.46 61.93 REMARK 500 1 PRO A 98 32.19 -69.71 REMARK 500 1 VAL A 113 -90.33 -101.75 REMARK 500 1 SER A 116 43.59 -145.67 REMARK 500 1 SER A 117 -43.66 -164.16 REMARK 500 2 MET A 3 -32.95 175.71 REMARK 500 2 LYS A 68 96.37 62.12 REMARK 500 2 SER A 100 -21.34 -146.35 REMARK 500 2 VAL A 113 -92.47 -98.88 REMARK 500 2 SER A 117 131.60 -178.04 REMARK 500 3 VAL A 6 132.84 -170.26 REMARK 500 3 THR A 10 31.43 -87.34 REMARK 500 3 LYS A 68 93.48 57.48 REMARK 500 3 SER A 100 -16.31 -145.06 REMARK 500 3 VAL A 113 -97.96 -95.08 REMARK 500 3 ASN A 115 -148.40 53.30 REMARK 500 4 ASN A 5 93.81 -171.24 REMARK 500 4 CYS A 7 77.47 57.77 REMARK 500 4 LYS A 68 80.54 49.08 REMARK 500 4 PRO A 98 -9.91 -59.55 REMARK 500 4 VAL A 113 -91.09 -92.92 REMARK 500 5 VAL A 6 144.28 -175.99 REMARK 500 5 PRO A 9 153.29 -48.12 REMARK 500 5 LYS A 68 109.72 -29.58 REMARK 500 5 SER A 80 -178.53 -63.79 REMARK 500 5 ASP A 101 -19.30 73.24 REMARK 500 5 TYR A 105 -174.59 -179.03 REMARK 500 5 VAL A 113 -140.81 -92.57 REMARK 500 5 LYS A 114 -154.54 -129.33 REMARK 500 5 ASN A 115 -48.64 74.83 REMARK 500 6 MET A 3 -66.05 69.47 REMARK 500 6 ASN A 5 -75.59 69.30 REMARK 500 6 VAL A 6 -172.35 -179.02 REMARK 500 6 CYS A 7 91.54 -61.65 REMARK 500 6 LYS A 68 92.33 58.66 REMARK 500 6 SER A 100 -24.47 -145.96 REMARK 500 6 ASP A 101 -7.40 69.75 REMARK 500 6 SER A 116 -71.56 73.29 REMARK 500 6 GLN A 118 91.09 77.76 REMARK 500 7 MET A 3 -156.98 64.53 REMARK 500 7 THR A 10 32.86 -89.13 REMARK 500 7 LYS A 68 99.36 62.36 REMARK 500 7 PRO A 98 9.40 -68.25 REMARK 500 7 VAL A 113 -113.60 -88.90 REMARK 500 7 ASN A 115 45.97 73.02 REMARK 500 7 SER A 116 44.49 -154.90 REMARK 500 8 ALA A 2 -64.86 -134.68 REMARK 500 8 MET A 3 117.62 67.75 REMARK 500 8 ASP A 4 144.46 75.89 REMARK 500 8 ASN A 5 -65.06 -144.18 REMARK 500 8 CYS A 7 95.87 -68.46 REMARK 500 8 PRO A 9 156.82 -48.38 REMARK 500 8 THR A 10 30.26 -87.69 REMARK 500 8 LYS A 68 98.28 58.78 REMARK 500 8 VAL A 113 -93.68 -90.30 REMARK 500 8 ASN A 115 146.24 75.63 REMARK 500 8 SER A 117 -62.96 -96.29 REMARK 500 8 GLN A 118 -159.71 -114.06 REMARK 500 9 MET A 3 -18.52 72.32 REMARK 500 9 ASN A 5 146.71 175.05 REMARK 500 9 VAL A 6 132.84 -179.23 REMARK 500 9 VAL A 33 -34.01 -131.18 REMARK 500 9 SER A 100 -20.07 -168.64 REMARK 500 9 VAL A 113 -127.59 -93.35 REMARK 500 9 ASN A 115 96.39 71.49 REMARK 500 10 MET A 3 -73.65 -179.25 REMARK 500 10 LYS A 68 97.98 62.54 REMARK 500 10 SER A 100 -17.35 -143.72 REMARK 500 10 ASP A 101 -13.96 74.19 REMARK 500 10 SER A 116 136.81 73.86 REMARK 500 11 ALA A 2 -70.36 68.63 REMARK 500 11 ASP A 4 98.53 63.55 REMARK 500 11 CYS A 7 81.25 64.41 REMARK 500 11 THR A 10 33.00 -85.68 REMARK 500 11 ARG A 28 0.02 -68.43 REMARK 500 11 LYS A 68 101.70 -36.47 REMARK 500 11 VAL A 113 -84.27 -94.42 REMARK 500 11 SER A 116 -76.19 68.42 REMARK 500 12 MET A 3 -66.24 -171.89 REMARK 500 12 CYS A 7 65.24 70.07 REMARK 500 12 LYS A 68 93.41 55.51 REMARK 500 12 SER A 100 -14.99 -141.98 REMARK 500 12 ASP A 101 -15.11 71.57 REMARK 500 12 ASN A 115 171.46 68.97 REMARK 500 12 SER A 116 -41.02 -148.33 REMARK 500 12 SER A 117 67.82 64.42 REMARK 500 13 ALA A 2 -77.39 -98.33 REMARK 500 13 MET A 3 176.91 68.29 REMARK 500 13 CYS A 7 70.30 59.22 REMARK 500 13 LEU A 67 30.45 -95.78 REMARK 500 13 LYS A 68 109.99 -29.86 REMARK 500 13 SER A 100 -18.79 -147.11 REMARK 500 13 VAL A 113 -95.83 -82.81 REMARK 500 14 VAL A 6 143.64 76.92 REMARK 500 14 CYS A 7 105.99 -58.78 REMARK 500 14 LYS A 68 108.62 -34.51 REMARK 500 14 SER A 80 173.54 -58.55 REMARK 500 14 PRO A 98 -8.49 -59.00 REMARK 500 14 SER A 100 22.02 -144.41 REMARK 500 14 TYR A 105 -172.13 179.97 REMARK 500 14 VAL A 113 -83.29 -105.58 REMARK 500 14 SER A 116 162.99 71.22 REMARK 500 15 ALA A 2 -68.90 -162.85 REMARK 500 15 ASP A 4 -85.01 -149.91 REMARK 500 15 VAL A 6 140.66 72.16 REMARK 500 15 LYS A 68 95.24 62.28 REMARK 500 15 PRO A 98 1.97 -66.20 REMARK 500 15 SER A 100 -0.29 -157.95 REMARK 500 15 ASP A 101 27.28 49.07 REMARK 500 15 VAL A 113 -96.00 -92.73 REMARK 500 15 ASN A 115 140.28 69.52 REMARK 500 16 MET A 3 106.92 172.74 REMARK 500 16 ASP A 4 -43.94 70.35 REMARK 500 16 CYS A 7 121.77 72.33 REMARK 500 16 LYS A 68 97.57 57.69 REMARK 500 16 VAL A 113 -83.79 -81.19 REMARK 500 16 SER A 117 85.19 -66.28 REMARK 500 17 CYS A 7 76.31 63.55 REMARK 500 17 THR A 10 31.70 -89.15 REMARK 500 17 VAL A 33 -30.81 -132.27 REMARK 500 17 LEU A 67 30.36 -86.03 REMARK 500 17 LYS A 68 108.71 -28.06 REMARK 500 17 SER A 100 -13.78 -144.64 REMARK 500 17 VAL A 113 -112.10 -87.17 REMARK 500 17 SER A 117 37.68 -165.50 REMARK 500 17 GLN A 118 43.05 -172.24 REMARK 500 18 ASP A 4 80.39 67.37 REMARK 500 18 CYS A 7 38.56 172.58 REMARK 500 18 THR A 10 34.09 -88.54 REMARK 500 18 LEU A 67 30.11 -91.42 REMARK 500 18 LYS A 68 115.45 -31.26 REMARK 500 18 ASP A 101 18.33 55.79 REMARK 500 18 VAL A 113 -89.63 -115.11 REMARK 500 19 ALA A 2 173.40 71.34 REMARK 500 19 MET A 3 -166.54 59.75 REMARK 500 19 ASP A 4 84.43 60.39 REMARK 500 19 VAL A 6 137.75 -172.25 REMARK 500 19 LYS A 68 98.39 58.60 REMARK 500 19 ASP A 101 -10.94 68.82 REMARK 500 19 VAL A 113 -99.33 -87.99 REMARK 500 19 ASN A 115 140.29 67.23 REMARK 500 20 ALA A 2 -63.19 -155.88 REMARK 500 20 MET A 3 -101.40 56.21 REMARK 500 20 VAL A 6 -39.10 -136.31 REMARK 500 20 LYS A 68 90.06 60.39 REMARK 500 20 GLN A 83 52.33 70.19 REMARK 500 20 SER A 100 -15.63 -148.79 REMARK 500 20 TYR A 105 -172.32 -173.85 REMARK 500 20 VAL A 113 -112.19 -86.49 REMARK 500 20 ASN A 115 102.81 63.09 REMARK 500 20 SER A 116 -71.86 -163.29 REMARK 500 20 SER A 117 27.61 -168.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 12 ARG A 79 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1X0O A 5 119 UNP P27540 ARNT_HUMAN 356 470
SEQADV 1X0O GLY A 1 UNP P27540 CLONING ARTIFACT SEQADV 1X0O ALA A 2 UNP P27540 CLONING ARTIFACT SEQADV 1X0O MET A 3 UNP P27540 CLONING ARTIFACT SEQADV 1X0O ASP A 4 UNP P27540 CLONING ARTIFACT
SEQRES 1 A 119 GLY ALA MET ASP ASN VAL CYS GLN PRO THR GLU PHE ILE SEQRES 2 A 119 SER ARG HIS ASN ILE GLU GLY ILE PHE THR PHE VAL ASP SEQRES 3 A 119 HIS ARG CYS VAL ALA THR VAL GLY TYR GLN PRO GLN GLU SEQRES 4 A 119 LEU LEU GLY LYS ASN ILE VAL GLU PHE CYS HIS PRO GLU SEQRES 5 A 119 ASP GLN GLN LEU LEU ARG ASP SER PHE GLN GLN VAL VAL SEQRES 6 A 119 LYS LEU LYS GLY GLN VAL LEU SER VAL MET PHE ARG PHE SEQRES 7 A 119 ARG SER LYS ASN GLN GLU TRP LEU TRP MET ARG THR SER SEQRES 8 A 119 SER PHE THR PHE GLN ASN PRO TYR SER ASP GLU ILE GLU SEQRES 9 A 119 TYR ILE ILE CYS THR ASN THR ASN VAL LYS ASN SER SER SEQRES 10 A 119 GLN GLU
HELIX 1 1 ARG A 28 GLY A 34 1 7 HELIX 2 2 GLN A 36 LEU A 41 1 6 HELIX 3 3 ASP A 53 LYS A 68 1 16
SHEET 1 A 5 PHE A 22 VAL A 25 0 SHEET 2 A 5 GLU A 11 HIS A 16 -1 N ARG A 15 O PHE A 24 SHEET 3 A 5 ILE A 103 ASN A 112 -1 O CYS A 108 N SER A 14 SHEET 4 A 5 TRP A 85 GLN A 96 -1 N ARG A 89 O THR A 111 SHEET 5 A 5 LEU A 72 ARG A 79 -1 N VAL A 74 O THR A 90
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000