10 20 30 40 50 60 70 80 1WZ4 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER GENE REGULATION 23-FEB-05 1WZ4
TITLE SOLUTION CONFORMATION OF ADR SUBTYPE HBV PRE-S2 EPITOPE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR SURFACE ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE SEQUENCE OCCURS NATURALLY IN PRES2(123- SOURCE 4 145) REGION OF SURFACE ENVELOPE PROTEIN OF HEPATITIS B SOURCE 5 VIRUS
KEYWDS HELIX TURN HELIX, GENE REGULATION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR S.W.CHI,K.H.HAN
REVDAT 3 19-JAN-10 1WZ4 1 JRNL REVDAT 2 24-FEB-09 1WZ4 1 VERSN REVDAT 1 16-MAY-06 1WZ4 0
JRNL AUTH S.W.CHI,D.H.KIM,J.S.KIM,M.K.LEE,K.H.HAN JRNL TITL SOLUTION CONFORMATION OF AN IMMUNODOMINANT EPITOPE JRNL TITL 2 IN THE HEPATITIS B VIRUS PRES2 SURFACE ANTIGEN. JRNL REF ANTIVIRAL RES. V. 72 207 2006 JRNL REFN ISSN 0166-3542 JRNL PMID 16872688 JRNL DOI 10.1016/J.ANTIVIRAL.2006.06.009
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVER 2.98 REMARK 3 AUTHORS : MOLECULAR SIMULATIONS INC. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1WZ4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-FEB-05. REMARK 100 THE RCSB ID CODE IS RCSB024175.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288; 298 REMARK 210 PH : 3.85; 3.85 REMARK 210 IONIC STRENGTH : 0; 0 REMARK 210 PRESSURE : 1ATM; 1ATM REMARK 210 SAMPLE CONTENTS : 5MM ADR123; 5MM ADR123 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; DQF-COSY; REMARK 210 PE-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1B, FELIX 98.0 REMARK 210 METHOD USED : DISTANCE GEOMETRY, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : BACK CALCULATED DATA AGREE REMARK 210 WITH EXPERIMENTAL NOESY REMARK 210 SPECTRUM REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 2 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 TYR A 18 CB - CG - CD2 ANGL. DEV. = -7.9 DEGREES REMARK 500 2 TYR A 18 CB - CG - CD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 3 TYR A 18 CB - CG - CD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 4 TYR A 18 CB - CG - CD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 5 TYR A 18 CB - CG - CD2 ANGL. DEV. = -8.4 DEGREES REMARK 500 6 TYR A 18 CB - CG - CD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 7 TYR A 18 CB - CG - CD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 8 TYR A 18 CB - CG - CD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 9 TYR A 18 CB - CG - CD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 10 TYR A 18 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 10 TYR A 18 CB - CG - CD1 ANGL. DEV. = -7.0 DEGREES REMARK 500 11 TYR A 18 CB - CG - CD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 12 TYR A 18 CB - CG - CD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 13 TYR A 18 CB - CG - CD1 ANGL. DEV. = -7.6 DEGREES REMARK 500 14 TYR A 18 CB - CG - CD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 15 TYR A 18 CB - CG - CD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 16 TYR A 18 CB - CG - CD2 ANGL. DEV. = -5.3 DEGREES REMARK 500 17 TYR A 18 CB - CG - CD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 18 TYR A 18 CB - CG - CD2 ANGL. DEV. = -5.3 DEGREES REMARK 500 19 TYR A 18 CB - CG - CD2 ANGL. DEV. = -8.4 DEGREES REMARK 500 20 TYR A 18 CB - CG - CD2 ANGL. DEV. = -8.5 DEGREES REMARK 500 20 TYR A 18 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 8 36.66 -96.33 REMARK 500 1 ASP A 11 143.74 166.50 REMARK 500 1 PRO A 12 -0.88 -50.48 REMARK 500 1 ARG A 13 44.40 -150.15 REMARK 500 1 ARG A 15 -59.54 -29.40 REMARK 500 1 TYR A 18 30.45 -160.20 REMARK 500 2 GLN A 7 -40.34 -29.36 REMARK 500 2 LEU A 10 -2.52 -140.84 REMARK 500 2 ASP A 11 144.40 168.90 REMARK 500 2 ARG A 13 47.54 -144.72 REMARK 500 2 TYR A 18 25.80 -146.46 REMARK 500 3 ASP A 11 136.86 171.74 REMARK 500 3 PRO A 12 -36.88 -32.21 REMARK 500 3 ARG A 13 49.20 -147.72 REMARK 500 3 LEU A 17 21.04 -76.01 REMARK 500 3 TYR A 18 24.59 -146.62 REMARK 500 4 ASP A 11 134.57 167.92 REMARK 500 4 PRO A 12 -35.18 -33.45 REMARK 500 4 ARG A 13 47.65 -145.01 REMARK 500 4 TYR A 18 19.74 -145.83 REMARK 500 5 ALA A 8 35.74 -94.85 REMARK 500 5 ASP A 11 148.09 166.68 REMARK 500 5 PRO A 12 8.98 -61.26 REMARK 500 5 ARG A 13 41.47 -151.23 REMARK 500 5 ARG A 15 -49.09 -29.94 REMARK 500 5 TYR A 18 16.90 -145.38 REMARK 500 6 ALA A 8 31.25 -95.32 REMARK 500 6 ASP A 11 137.60 168.52 REMARK 500 6 PRO A 12 -39.65 -31.90 REMARK 500 6 ARG A 13 50.71 -143.06 REMARK 500 6 LEU A 17 20.92 -74.24 REMARK 500 6 TYR A 18 25.26 -146.87 REMARK 500 7 ASP A 11 159.82 173.68 REMARK 500 7 ARG A 13 53.51 -153.84 REMARK 500 7 TYR A 18 22.42 -145.72 REMARK 500 8 ALA A 8 31.35 -99.44 REMARK 500 8 ASP A 11 136.22 171.96 REMARK 500 8 PRO A 12 -34.25 -33.65 REMARK 500 8 ARG A 13 48.75 -147.41 REMARK 500 8 LEU A 17 20.98 -73.20 REMARK 500 8 TYR A 18 25.36 -145.62 REMARK 500 9 ASP A 11 151.58 168.03 REMARK 500 9 ARG A 13 47.54 -144.68 REMARK 500 9 TYR A 18 23.16 -141.38 REMARK 500 10 ASP A 11 135.45 178.32 REMARK 500 10 PRO A 12 -32.52 -36.15 REMARK 500 10 ARG A 13 49.44 -147.04 REMARK 500 10 TYR A 18 36.76 -147.80 REMARK 500 11 GLN A 7 -37.12 -37.02 REMARK 500 11 ASP A 11 139.65 166.71 REMARK 500 REMARK 500 THIS ENTRY HAS 93 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 13 VAL A 14 7 149.84 REMARK 500 LEU A 17 TYR A 18 10 -144.19 REMARK 500 ARG A 13 VAL A 14 13 145.99 REMARK 500 PRO A 12 ARG A 13 14 149.41 REMARK 500 ARG A 13 VAL A 14 17 147.52 REMARK 500 ARG A 13 VAL A 14 18 149.68 REMARK 500 ASP A 11 PRO A 12 19 143.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 PHE A 5 0.17 SIDE CHAIN REMARK 500 1 TYR A 18 0.24 SIDE CHAIN REMARK 500 2 PHE A 5 0.17 SIDE CHAIN REMARK 500 2 TYR A 18 0.19 SIDE CHAIN REMARK 500 2 PHE A 19 0.08 SIDE CHAIN REMARK 500 3 PHE A 5 0.12 SIDE CHAIN REMARK 500 3 TYR A 18 0.18 SIDE CHAIN REMARK 500 3 PHE A 19 0.09 SIDE CHAIN REMARK 500 4 PHE A 5 0.15 SIDE CHAIN REMARK 500 4 TYR A 18 0.07 SIDE CHAIN REMARK 500 4 PHE A 19 0.12 SIDE CHAIN REMARK 500 5 PHE A 5 0.17 SIDE CHAIN REMARK 500 5 TYR A 18 0.29 SIDE CHAIN REMARK 500 5 PHE A 19 0.08 SIDE CHAIN REMARK 500 6 PHE A 5 0.11 SIDE CHAIN REMARK 500 6 TYR A 18 0.18 SIDE CHAIN REMARK 500 6 PHE A 19 0.09 SIDE CHAIN REMARK 500 7 PHE A 5 0.16 SIDE CHAIN REMARK 500 7 TYR A 18 0.08 SIDE CHAIN REMARK 500 7 PHE A 19 0.11 SIDE CHAIN REMARK 500 8 PHE A 5 0.11 SIDE CHAIN REMARK 500 8 TYR A 18 0.18 SIDE CHAIN REMARK 500 8 PHE A 19 0.09 SIDE CHAIN REMARK 500 9 PHE A 5 0.11 SIDE CHAIN REMARK 500 9 TYR A 18 0.14 SIDE CHAIN REMARK 500 9 PHE A 19 0.11 SIDE CHAIN REMARK 500 10 PHE A 5 0.16 SIDE CHAIN REMARK 500 10 TYR A 18 0.25 SIDE CHAIN REMARK 500 10 PHE A 19 0.09 SIDE CHAIN REMARK 500 11 PHE A 5 0.18 SIDE CHAIN REMARK 500 11 TYR A 18 0.14 SIDE CHAIN REMARK 500 11 PHE A 19 0.11 SIDE CHAIN REMARK 500 12 PHE A 5 0.11 SIDE CHAIN REMARK 500 12 TYR A 18 0.14 SIDE CHAIN REMARK 500 12 PHE A 19 0.09 SIDE CHAIN REMARK 500 13 PHE A 5 0.18 SIDE CHAIN REMARK 500 13 TYR A 18 0.08 SIDE CHAIN REMARK 500 13 PHE A 19 0.09 SIDE CHAIN REMARK 500 14 PHE A 5 0.17 SIDE CHAIN REMARK 500 14 TYR A 18 0.24 SIDE CHAIN REMARK 500 15 PHE A 5 0.15 SIDE CHAIN REMARK 500 15 TYR A 18 0.09 SIDE CHAIN REMARK 500 15 PHE A 19 0.12 SIDE CHAIN REMARK 500 16 PHE A 5 0.12 SIDE CHAIN REMARK 500 16 TYR A 18 0.19 SIDE CHAIN REMARK 500 17 PHE A 5 0.12 SIDE CHAIN REMARK 500 17 TYR A 18 0.25 SIDE CHAIN REMARK 500 18 PHE A 5 0.15 SIDE CHAIN REMARK 500 18 TYR A 18 0.19 SIDE CHAIN REMARK 500 18 PHE A 19 0.12 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 55 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL
DBREF 1WZ4 A 1 23 UNP P03140 VMSA_HPBVR 123 145
SEQRES 1 A 23 ASN SER THR THR PHE HIS GLN ALA LEU LEU ASP PRO ARG SEQRES 2 A 23 VAL ARG GLY LEU TYR PHE PRO ALA GLY GLY
HELIX 1 1 ASN A 1 GLN A 7 1 7 HELIX 2 2 VAL A 14 TYR A 18 5 5
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000