10 20 30 40 50 60 70 80 1WYH - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL BINDING PROTEIN 14-FEB-05 1WYH
TITLE SOLUTION STRUCTURE OF THE LIM DOMAIN FROM HUMAN SKELETAL TITLE 2 MUSCLE LIM-PROTEIN 2
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SKELETAL MUSCLE LIM-PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIM DOMAIN; COMPND 5 SYNONYM: SLIM 2; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SLIM2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040830-07; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS LIM, STRUCTURAL GENOMICS, NMR, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, NPPSFA, NATIONAL KEYWDS 3 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 4 METAL BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.N.NIRAULA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 1WYH 1 VERSN REVDAT 1 14-AUG-05 1WYH 0
JRNL AUTH T.N.NIRAULA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE LIM DOMAIN FROM HUMAN JRNL TITL 2 SKELETAL MUSCLE LIM-PROTEIN 2 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUENTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1WYH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-FEB-05. REMARK 100 THE RCSB ID CODE IS RCSB024153.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2.09MM LIM DOMAIN U-13C, 15N; REMARK 210 20MM D-TRIS-HCL; 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 0.001MM REMARK 210 ZNCL2; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 200311221, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.913, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 47.29 -108.08 REMARK 500 1 GLU A 13 178.21 -54.29 REMARK 500 1 PHE A 34 96.84 -65.73 REMARK 500 1 PRO A 42 93.14 -69.80 REMARK 500 1 SER A 45 -34.69 -131.56 REMARK 500 1 LYS A 52 95.89 -43.35 REMARK 500 1 SER A 70 122.49 -39.40 REMARK 500 2 GLU A 13 -175.40 -51.50 REMARK 500 2 PHE A 34 99.00 -68.75 REMARK 500 2 PRO A 42 94.67 -69.79 REMARK 500 2 LYS A 52 99.12 -40.34 REMARK 500 3 ARG A 20 107.61 -51.76 REMARK 500 3 PHE A 34 97.58 -66.36 REMARK 500 3 PRO A 42 91.49 -69.73 REMARK 500 3 LYS A 52 98.79 -45.74 REMARK 500 3 PRO A 69 88.96 -69.77 REMARK 500 4 GLU A 13 -176.86 -52.25 REMARK 500 4 PHE A 34 99.12 -68.01 REMARK 500 4 PRO A 42 93.85 -69.79 REMARK 500 4 LYS A 52 97.78 -44.68 REMARK 500 4 SER A 67 43.60 35.85 REMARK 500 4 SER A 70 96.40 -41.87 REMARK 500 5 SER A 6 108.65 -50.31 REMARK 500 5 GLU A 13 177.65 -54.22 REMARK 500 5 ARG A 20 117.85 -34.53 REMARK 500 5 PHE A 34 98.43 -66.25 REMARK 500 5 PRO A 42 95.49 -69.72 REMARK 500 5 PRO A 69 -173.95 -69.78 REMARK 500 6 GLU A 13 -178.69 -53.09 REMARK 500 6 VAL A 15 99.70 -61.35 REMARK 500 6 PRO A 17 -168.64 -69.79 REMARK 500 6 ARG A 20 107.33 -41.94 REMARK 500 6 PHE A 34 98.72 -66.84 REMARK 500 6 PRO A 42 96.30 -69.72 REMARK 500 6 ASP A 51 118.89 -161.09 REMARK 500 6 SER A 70 127.82 -36.47 REMARK 500 7 SER A 2 141.78 -34.50 REMARK 500 7 SER A 3 42.30 -101.73 REMARK 500 7 GLU A 13 176.70 -52.75 REMARK 500 7 PHE A 34 93.54 -66.18 REMARK 500 7 PRO A 42 95.14 -69.85 REMARK 500 7 SER A 45 -38.25 -130.74 REMARK 500 7 PRO A 69 0.20 -69.76 REMARK 500 8 SER A 6 138.49 -34.84 REMARK 500 8 GLU A 13 175.59 -55.72 REMARK 500 8 PHE A 34 97.59 -65.57 REMARK 500 8 PRO A 42 96.15 -69.82 REMARK 500 9 SER A 3 81.71 -64.60 REMARK 500 9 GLU A 13 -179.60 -57.63 REMARK 500 9 SER A 19 140.09 -170.58 REMARK 500 9 PHE A 34 97.61 -67.04 REMARK 500 9 PRO A 42 97.01 -69.76 REMARK 500 9 ALA A 66 48.17 -86.08 REMARK 500 9 SER A 67 142.47 -170.48 REMARK 500 9 PRO A 69 79.98 -69.81 REMARK 500 10 SER A 2 108.52 -167.35 REMARK 500 10 GLU A 13 -178.55 -51.81 REMARK 500 10 ARG A 20 107.67 -37.63 REMARK 500 10 PHE A 34 95.68 -64.46 REMARK 500 10 PRO A 42 92.96 -69.77 REMARK 500 10 LYS A 52 100.25 -43.90 REMARK 500 10 SER A 67 40.73 -100.27 REMARK 500 10 PRO A 69 -177.88 -69.76 REMARK 500 11 GLU A 13 176.74 -53.96 REMARK 500 11 PHE A 34 96.65 -65.14 REMARK 500 11 PRO A 42 90.63 -69.72 REMARK 500 11 LYS A 52 99.32 -44.99 REMARK 500 11 PRO A 69 86.07 -69.80 REMARK 500 12 SER A 5 -59.66 -125.64 REMARK 500 12 PHE A 34 95.76 -65.37 REMARK 500 12 PRO A 42 93.81 -69.78 REMARK 500 12 SER A 67 53.56 -94.46 REMARK 500 13 GLU A 13 177.69 -53.11 REMARK 500 13 PHE A 34 97.55 -63.08 REMARK 500 13 PRO A 42 97.42 -69.78 REMARK 500 13 SER A 45 -34.90 -130.49 REMARK 500 13 PRO A 69 5.81 -69.81 REMARK 500 13 SER A 70 52.10 74.00 REMARK 500 14 GLU A 13 179.44 -53.31 REMARK 500 14 PHE A 34 98.01 -63.56 REMARK 500 14 PRO A 42 92.58 -69.77 REMARK 500 15 PHE A 34 98.29 -64.62 REMARK 500 15 PRO A 42 96.09 -69.77 REMARK 500 15 ALA A 66 36.64 -95.04 REMARK 500 15 PRO A 69 94.03 -69.77 REMARK 500 16 SER A 6 -76.23 -104.22 REMARK 500 16 GLU A 13 -174.77 -57.67 REMARK 500 16 PHE A 34 98.28 -67.59 REMARK 500 16 PRO A 42 91.92 -69.84 REMARK 500 16 LYS A 52 98.98 -43.30 REMARK 500 17 GLU A 13 -179.90 -52.62 REMARK 500 17 PHE A 34 97.05 -67.44 REMARK 500 17 PRO A 42 94.90 -69.72 REMARK 500 17 LYS A 52 99.71 -45.17 REMARK 500 17 ALA A 66 124.85 -170.62 REMARK 500 18 GLU A 13 179.87 -52.59 REMARK 500 18 ARG A 20 119.47 -39.79 REMARK 500 18 PHE A 34 95.17 -66.28 REMARK 500 18 PRO A 42 91.94 -69.79 REMARK 500 19 SER A 6 -76.20 -38.76 REMARK 500 19 GLU A 13 -179.63 -54.90 REMARK 500 19 ARG A 20 113.11 -35.76 REMARK 500 19 PHE A 34 99.41 -66.58 REMARK 500 19 PRO A 42 90.30 -69.79 REMARK 500 19 LYS A 52 96.07 -42.25 REMARK 500 20 SER A 5 42.36 -82.73 REMARK 500 20 SER A 6 131.11 -175.13 REMARK 500 20 GLU A 13 -178.90 -54.47 REMARK 500 20 VAL A 15 98.42 -68.60 REMARK 500 20 ARG A 20 121.93 -38.45 REMARK 500 20 PHE A 34 98.24 -65.53 REMARK 500 20 PRO A 42 96.43 -69.81 REMARK 500 20 ASP A 51 114.79 -162.04 REMARK 500 20 SER A 67 42.09 39.53 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 8 SG REMARK 620 2 CYS A 11 SG 101.7 REMARK 620 3 HIS A 30 ND1 89.9 111.2 REMARK 620 4 CYS A 33 SG 102.6 122.1 120.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 36 SG REMARK 620 2 CYS A 39 SG 112.1 REMARK 620 3 CYS A 57 SG 118.3 119.0 REMARK 620 4 CYS A 60 SG 95.1 120.3 87.5 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002003711.1 RELATED DB: TARGETDB
DBREF 1WYH A 8 66 UNP Q13643 FHL3_HUMAN 101 159
SEQADV 1WYH GLY A 1 UNP Q13643 CLONING ARTIFACT SEQADV 1WYH SER A 2 UNP Q13643 CLONING ARTIFACT SEQADV 1WYH SER A 3 UNP Q13643 CLONING ARTIFACT SEQADV 1WYH GLY A 4 UNP Q13643 CLONING ARTIFACT SEQADV 1WYH SER A 5 UNP Q13643 CLONING ARTIFACT SEQADV 1WYH SER A 6 UNP Q13643 CLONING ARTIFACT SEQADV 1WYH GLY A 7 UNP Q13643 CLONING ARTIFACT SEQADV 1WYH SER A 67 UNP Q13643 CLONING ARTIFACT SEQADV 1WYH GLY A 68 UNP Q13643 CLONING ARTIFACT SEQADV 1WYH PRO A 69 UNP Q13643 CLONING ARTIFACT SEQADV 1WYH SER A 70 UNP Q13643 CLONING ARTIFACT SEQADV 1WYH SER A 71 UNP Q13643 CLONING ARTIFACT SEQADV 1WYH GLY A 72 UNP Q13643 CLONING ARTIFACT
SEQRES 1 A 72 GLY SER SER GLY SER SER GLY CYS SER ALA CYS GLY GLU SEQRES 2 A 72 THR VAL MET PRO GLY SER ARG LYS LEU GLU TYR GLY GLY SEQRES 3 A 72 GLN THR TRP HIS GLU HIS CYS PHE LEU CYS SER GLY CYS SEQRES 4 A 72 GLU GLN PRO LEU GLY SER ARG SER PHE VAL PRO ASP LYS SEQRES 5 A 72 GLY ALA HIS TYR CYS VAL PRO CYS TYR GLU ASN LYS PHE SEQRES 6 A 72 ALA SER GLY PRO SER SER GLY
HET ZN A 201 1 HET ZN A 401 1
HETNAM ZN ZINC ION
FORMUL 2 ZN 2(ZN 2+)
HELIX 1 1 VAL A 58 PHE A 65 1 8
SHEET 1 A 2 LYS A 21 LEU A 22 0 SHEET 2 A 2 TRP A 29 HIS A 30 -1 O TRP A 29 N LEU A 22 SHEET 1 B 2 PHE A 48 ASP A 51 0 SHEET 2 B 2 ALA A 54 CYS A 57 -1 O TYR A 56 N VAL A 49
LINK ZN ZN A 201 SG CYS A 8 1555 1555 2.38 LINK ZN ZN A 201 SG CYS A 11 1555 1555 2.30 LINK ZN ZN A 201 ND1 HIS A 30 1555 1555 2.32 LINK ZN ZN A 201 SG CYS A 33 1555 1555 2.30 LINK ZN ZN A 401 SG CYS A 36 1555 1555 2.38 LINK ZN ZN A 401 SG CYS A 39 1555 1555 2.31 LINK ZN ZN A 401 SG CYS A 57 1555 1555 2.28 LINK ZN ZN A 401 SG CYS A 60 1555 1555 2.32
SITE 1 AC1 4 CYS A 8 CYS A 11 HIS A 30 CYS A 33 SITE 1 AC2 4 CYS A 36 CYS A 39 CYS A 57 CYS A 60
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000