10 20 30 40 50 60 70 80 1WVZ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 28-DEC-04 1WVZ
TITLE SOLUTION STRUCTURE OF THE D2 DOMAIN OF THE FIBROBLAST TITLE 2 GROWTH FACTOR
COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBROBLAST GROWTH FACTOR RECEPTOR 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: D2 DOMAIN; COMPND 5 SYNONYM: FGFR-2, KERATINOCYTE GROWTH FACTOR RECEPTOR 2; COMPND 6 EC: 2.7.1.112
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606
KEYWDS FIBROBLAST GROWTH FACTOR RECEPTOR, HEPARIN, TUMOR, KEYWDS 2 ANGIOGENESIS, TRANSFERASE
EXPDTA SOLUTION NMR
NUMMDL 20
MDLTYP MINIMIZED AVERAGE
AUTHOR K.W.HUNG,T.K.S.KUMAR,C.YU
REVDAT 2 24-FEB-09 1WVZ 1 VERSN REVDAT 1 28-DEC-05 1WVZ 0
JRNL AUTH K.W.HUNG,T.K.S.KUMAR,C.YU JRNL TITL SOLUTION STRUCTURE OF THE D2 DOMAIN OF THE JRNL TITL 2 FIBROBLAST GROWTH FACTOR JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 3.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 975 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 157 DIHEDRAL REMARK 3 ANGLE RESRAINTS, 39 DISTANCE RESTRAINTS FROM HYDROGEN BONDS
REMARK 4 REMARK 4 1WVZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JAN-05. REMARK 100 THE RCSB ID CODE IS RCSB024067.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20MM PHOSPHATE BUFFER REMARK 210 CONTAINING 20MM NACL AND 50MM REMARK 210 AMMONIUM SULFATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM FIBROBLAST GROWTH FACTOR REMARK 210 RECEPTOR, U-15N, 13C; 20MM REMARK 210 PHOSPHATE BUFFER (PH 6.5) REMARK 210 CONTAINING 20MM NACL, 50MM REMARK 210 AMMONIUM SULFATE; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY, 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 3.1 REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 20 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 SER A 3
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 5 -147.00 -126.92 REMARK 500 1 ALA A 8 128.95 -36.30 REMARK 500 1 GLU A 18 43.48 178.20 REMARK 500 1 LYS A 19 -35.98 -171.96 REMARK 500 1 ARG A 20 -92.37 -65.27 REMARK 500 1 CYS A 34 57.16 -155.64 REMARK 500 1 ILE A 59 95.02 -68.50 REMARK 500 1 ASN A 66 -79.67 60.44 REMARK 500 1 GLN A 67 -41.80 -162.30 REMARK 500 1 TRP A 69 -74.32 88.36 REMARK 500 2 ASN A 5 -145.10 -118.94 REMARK 500 2 ALA A 8 119.23 -34.80 REMARK 500 2 GLU A 18 34.57 179.10 REMARK 500 2 LYS A 19 -41.15 -156.31 REMARK 500 2 CYS A 34 50.61 -152.46 REMARK 500 2 ILE A 59 94.59 -65.56 REMARK 500 2 ASN A 66 -90.11 47.56 REMARK 500 2 GLN A 67 33.93 -177.53 REMARK 500 2 HIS A 68 71.39 169.87 REMARK 500 2 TRP A 69 -84.82 -167.56 REMARK 500 3 ALA A 8 112.37 -33.16 REMARK 500 3 THR A 12 -66.34 -96.78 REMARK 500 3 GLU A 18 51.33 177.96 REMARK 500 3 LYS A 19 -43.67 -147.39 REMARK 500 3 CYS A 34 50.36 -155.58 REMARK 500 3 GLN A 67 16.10 -147.55 REMARK 500 3 TRP A 69 -84.68 -109.42 REMARK 500 4 ASN A 5 -146.07 -124.31 REMARK 500 4 ALA A 8 126.89 -35.13 REMARK 500 4 GLU A 18 34.33 -177.04 REMARK 500 4 LYS A 19 -34.10 -160.76 REMARK 500 4 ARG A 20 40.64 -87.08 REMARK 500 4 CYS A 34 57.60 -155.90 REMARK 500 4 MET A 41 75.24 -117.46 REMARK 500 4 GLN A 67 24.65 -160.50 REMARK 500 4 TRP A 69 -67.72 -120.78 REMARK 500 5 ASN A 5 -147.71 -126.52 REMARK 500 5 ALA A 8 129.72 -36.62 REMARK 500 5 THR A 12 -63.74 -96.97 REMARK 500 5 LYS A 19 60.78 -171.82 REMARK 500 5 ARG A 20 -69.21 -94.52 REMARK 500 5 CYS A 34 67.28 -150.84 REMARK 500 5 ASN A 66 -104.95 41.01 REMARK 500 5 GLN A 67 12.00 -148.92 REMARK 500 5 HIS A 68 104.01 174.60 REMARK 500 5 TRP A 69 -80.93 167.04 REMARK 500 6 ASN A 5 175.91 84.74 REMARK 500 6 ALA A 8 106.03 -38.58 REMARK 500 6 GLU A 18 42.77 174.60 REMARK 500 6 LYS A 19 -45.21 -142.71 REMARK 500 6 ARG A 20 40.60 -93.64 REMARK 500 6 CYS A 34 51.68 -155.86 REMARK 500 6 ASN A 66 29.91 40.25 REMARK 500 6 GLN A 67 -58.69 72.01 REMARK 500 6 TRP A 69 -78.90 163.63 REMARK 500 7 ASN A 5 -160.42 -163.20 REMARK 500 7 ALA A 8 121.23 -39.00 REMARK 500 7 THR A 12 -61.12 -96.86 REMARK 500 7 ARG A 20 -102.06 -114.96 REMARK 500 7 CYS A 34 59.47 -155.18 REMARK 500 7 MET A 41 74.30 -118.08 REMARK 500 7 ILE A 59 95.31 -67.98 REMARK 500 7 ASN A 66 86.73 -57.99 REMARK 500 7 GLN A 67 -85.51 171.13 REMARK 500 7 HIS A 68 45.53 165.76 REMARK 500 7 TRP A 69 -85.59 -110.69 REMARK 500 8 ALA A 8 125.53 -37.85 REMARK 500 8 GLU A 18 -40.17 -155.72 REMARK 500 8 CYS A 34 61.67 -155.72 REMARK 500 8 ASN A 49 26.76 47.92 REMARK 500 8 LYS A 54 -105.08 -155.77 REMARK 500 8 GLU A 56 51.91 -94.57 REMARK 500 8 HIS A 57 158.30 -42.78 REMARK 500 8 ASN A 66 -72.68 62.73 REMARK 500 8 GLN A 67 -36.90 -177.26 REMARK 500 8 TRP A 69 -73.73 172.34 REMARK 500 9 ASN A 5 -159.19 -160.33 REMARK 500 9 GLU A 18 -79.50 -115.31 REMARK 500 9 LYS A 19 85.97 -155.23 REMARK 500 9 ARG A 20 -94.67 -115.61 REMARK 500 9 CYS A 34 65.82 -152.33 REMARK 500 9 MET A 41 73.93 -113.56 REMARK 500 9 ILE A 59 94.68 -69.93 REMARK 500 9 GLN A 67 -89.71 -77.28 REMARK 500 9 HIS A 68 49.98 164.65 REMARK 500 9 TRP A 69 -70.89 -116.34 REMARK 500 10 ALA A 8 121.72 -35.76 REMARK 500 10 GLU A 18 -101.90 -151.56 REMARK 500 10 LYS A 19 -73.95 11.54 REMARK 500 10 ARG A 20 62.23 -69.96 REMARK 500 10 CYS A 34 53.19 -155.47 REMARK 500 10 ASN A 66 -81.85 59.17 REMARK 500 10 GLN A 67 -38.62 -163.68 REMARK 500 10 TRP A 69 -75.57 166.59 REMARK 500 11 ASN A 5 -147.68 -117.67 REMARK 500 11 ALA A 8 109.76 -44.91 REMARK 500 11 THR A 12 -62.60 -96.56 REMARK 500 11 GLU A 18 -70.56 -116.04 REMARK 500 11 LYS A 19 79.89 -154.06 REMARK 500 11 ARG A 20 -99.44 -111.59 REMARK 500 11 CYS A 34 66.00 -151.29 REMARK 500 11 MET A 41 75.36 -115.19 REMARK 500 11 ILE A 59 95.13 -67.97 REMARK 500 11 ASN A 66 38.45 -93.03 REMARK 500 11 GLN A 67 22.69 -145.88 REMARK 500 11 HIS A 68 74.63 49.51 REMARK 500 11 TRP A 69 -80.83 -144.85 REMARK 500 12 ASN A 5 -146.78 -123.99 REMARK 500 12 ALA A 8 125.41 -31.92 REMARK 500 12 THR A 12 -84.15 -96.58 REMARK 500 12 GLU A 18 59.33 166.44 REMARK 500 12 LYS A 19 -49.54 -167.52 REMARK 500 12 CYS A 34 57.86 -156.02 REMARK 500 12 MET A 41 75.08 -119.03 REMARK 500 12 ASN A 49 28.66 46.46 REMARK 500 12 GLN A 67 -81.59 178.47 REMARK 500 12 HIS A 68 90.37 167.97 REMARK 500 12 TRP A 69 -77.84 -155.31 REMARK 500 13 ASN A 5 -153.52 -114.64 REMARK 500 13 THR A 12 -70.04 -116.56 REMARK 500 13 GLU A 18 42.62 -176.49 REMARK 500 13 LYS A 19 -46.68 -163.08 REMARK 500 13 ARG A 20 -93.17 -66.25 REMARK 500 13 CYS A 34 65.30 -155.86 REMARK 500 13 MET A 41 74.83 -118.98 REMARK 500 13 ASN A 66 23.42 46.70 REMARK 500 13 GLN A 67 18.00 56.63 REMARK 500 13 HIS A 68 77.13 -169.34 REMARK 500 13 TRP A 69 -67.54 178.99 REMARK 500 14 ASN A 5 -161.31 43.54 REMARK 500 14 ALA A 8 106.21 -40.49 REMARK 500 14 GLU A 18 -62.08 -137.95 REMARK 500 14 ARG A 20 -103.17 -67.06 REMARK 500 14 ILE A 59 99.58 -67.53 REMARK 500 14 GLN A 67 25.28 -159.39 REMARK 500 14 TRP A 69 -78.12 -130.50 REMARK 500 15 ASN A 5 -134.34 -125.50 REMARK 500 15 ALA A 8 126.18 -37.06 REMARK 500 15 THR A 12 -83.48 -96.16 REMARK 500 15 GLU A 18 -31.55 -168.66 REMARK 500 15 ARG A 20 64.41 -68.85 REMARK 500 15 CYS A 34 49.75 -157.25 REMARK 500 15 ILE A 59 96.06 -68.60 REMARK 500 15 ASN A 66 -156.35 56.07 REMARK 500 15 HIS A 68 112.77 176.87 REMARK 500 15 TRP A 69 -82.85 171.45 REMARK 500 16 ASN A 5 -158.34 -135.20 REMARK 500 16 ALA A 8 114.97 -34.92 REMARK 500 16 THR A 12 -63.58 -98.07 REMARK 500 16 GLU A 18 -73.40 -116.86 REMARK 500 16 ARG A 20 -100.83 -107.06 REMARK 500 16 CYS A 34 65.43 -154.25 REMARK 500 16 ASN A 49 29.33 49.16 REMARK 500 16 LYS A 54 -94.98 -144.98 REMARK 500 16 GLU A 56 50.58 -94.28 REMARK 500 16 HIS A 57 160.42 -42.48 REMARK 500 16 ASN A 66 48.93 -88.22 REMARK 500 16 GLN A 67 24.51 -157.71 REMARK 500 16 TRP A 69 -82.44 -117.42 REMARK 500 17 ASN A 5 -147.52 -98.55 REMARK 500 17 ALA A 8 115.15 -38.08 REMARK 500 17 GLU A 18 8.58 169.27 REMARK 500 17 ARG A 20 -95.74 -67.69 REMARK 500 17 CYS A 34 66.97 -152.73 REMARK 500 17 ILE A 59 94.72 -67.26 REMARK 500 17 GLN A 67 23.16 -155.90 REMARK 500 17 TRP A 69 -68.27 -139.73 REMARK 500 18 ASN A 5 -157.36 -152.04 REMARK 500 18 THR A 12 -82.12 -95.67 REMARK 500 18 LYS A 19 91.52 -162.52 REMARK 500 18 ARG A 20 -95.77 -113.52 REMARK 500 18 CYS A 34 50.45 -157.87 REMARK 500 18 MET A 41 73.67 -113.45 REMARK 500 18 ASN A 49 25.29 47.28 REMARK 500 18 LYS A 54 -102.51 -174.81 REMARK 500 18 GLU A 56 50.61 -94.66 REMARK 500 18 HIS A 57 160.75 -41.62 REMARK 500 18 ASN A 66 -72.73 62.72 REMARK 500 18 GLN A 67 -36.15 -176.56 REMARK 500 18 TRP A 69 -83.21 -170.99 REMARK 500 19 ASN A 5 -147.15 -132.00 REMARK 500 19 ALA A 8 115.79 -39.18 REMARK 500 19 THR A 12 -60.37 -100.37 REMARK 500 19 GLU A 18 45.60 -177.42 REMARK 500 19 LYS A 19 -45.08 -177.03 REMARK 500 19 ARG A 20 -93.32 -66.12 REMARK 500 19 CYS A 34 60.00 -155.20 REMARK 500 19 ASN A 66 28.64 43.58 REMARK 500 19 TRP A 69 -100.39 77.83 REMARK 500 20 ASN A 5 -154.85 -119.35 REMARK 500 20 ALA A 8 115.22 -31.85 REMARK 500 20 THR A 12 -71.22 -97.41 REMARK 500 20 GLU A 18 49.56 -178.27 REMARK 500 20 LYS A 19 -43.95 -178.09 REMARK 500 20 ARG A 20 -93.29 -67.65 REMARK 500 20 CYS A 34 66.23 -153.89 REMARK 500 20 LYS A 54 -97.04 -170.10 REMARK 500 20 GLU A 56 51.88 -95.47 REMARK 500 20 HIS A 57 159.86 -42.54 REMARK 500 20 GLN A 67 26.19 -160.35 REMARK 500 20 TRP A 69 -74.23 -127.87 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1WVZ A 2 104 UNP Q9UQH9 FGR2_HUMAN 147 249
SEQADV 1WVZ MET A 1 UNP Q9UQH9 INITIATING METHIONINE
SEQRES 1 A 104 MET ASN SER ASN ASN LYS ARG ALA PRO TYR TRP THR ASN SEQRES 2 A 104 THR GLU LYS MET GLU LYS ARG LEU HIS ALA VAL PRO ALA SEQRES 3 A 104 ALA ASN THR VAL LYS PHE ARG CYS PRO ALA GLY GLY ASN SEQRES 4 A 104 PRO MET PRO THR MET ARG TRP LEU LYS ASN GLY LYS GLU SEQRES 5 A 104 PHE LYS GLN GLU HIS ARG ILE GLY GLY TYR LYS VAL ARG SEQRES 6 A 104 ASN GLN HIS TRP SER LEU ILE MET GLU SER VAL VAL PRO SEQRES 7 A 104 SER ASP LYS GLY ASN TYR THR CYS VAL VAL GLU ASN GLU SEQRES 8 A 104 TYR GLY SER ILE ASN HIS THR TYR HIS LEU ASP VAL VAL
HELIX 1 1 THR A 14 GLU A 18 5 5 HELIX 2 2 VAL A 77 LYS A 81 5 5
SHEET 1 A 2 TYR A 10 TRP A 11 0 SHEET 2 A 2 ALA A 36 GLY A 37 -1 O GLY A 37 N TYR A 10 SHEET 1 B 5 HIS A 22 PRO A 25 0 SHEET 2 B 5 HIS A 97 VAL A 104 1 O ASP A 102 N VAL A 24 SHEET 3 B 5 ASN A 83 ASN A 90 -1 N TYR A 84 O TYR A 99 SHEET 4 B 5 THR A 43 LYS A 48 -1 N ARG A 45 O VAL A 87 SHEET 5 B 5 LYS A 51 GLU A 52 -1 O LYS A 51 N LYS A 48 SHEET 1 C 4 HIS A 22 PRO A 25 0 SHEET 2 C 4 HIS A 97 VAL A 104 1 O ASP A 102 N VAL A 24 SHEET 3 C 4 ASN A 83 ASN A 90 -1 N TYR A 84 O TYR A 99 SHEET 4 C 4 GLY A 93 SER A 94 -1 O GLY A 93 N ASN A 90 SHEET 1 D 3 ASN A 28 CYS A 34 0 SHEET 2 D 3 TRP A 69 SER A 75 -1 O MET A 73 N VAL A 30 SHEET 3 D 3 TYR A 62 VAL A 64 -1 N LYS A 63 O ILE A 72
SSBOND 1 CYS A 34 CYS A 86 1555 1555 2.03
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000