10 20 30 40 50 60 70 80 1WVO - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 22-DEC-04 1WVO
TITLE SOLUTION STRUCTURE OF RSGI RUH-029, AN ANTIFREEZE PROTEIN TITLE 2 LIKE DOMAIN IN HUMAN N-ACETYLNEURAMINIC ACID PHOSPHATE TITLE 3 SYNTHASE GENE.
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIALIC ACID SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ANTIFREEZE PROTEIN LIKE DOMAIN; COMPND 5 SYNONYM: N-ACETYLNEURAMINATE SYNTHASE, N-CETYLNEURAMINIC COMPND 6 ACID SYNTHASE, N-ACETYLNEURAMINATE-9-PHOSPHATE SYNTHASE, N- COMPND 7 ACETYLNEURAMINIC ACID PHOSPHATE SYNTHASE; COMPND 8 EC: 2.5.1.56, 2.5.1.57; COMPND 9 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: P040531-08; SOURCE 7 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS NMR, ANTIFREEZE PROTEIN LIKE DOMAIN, N-ACETYLNEURAMINIC KEYWDS 2 ACID PHOSPHATE SYNTHASE, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 3 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 4 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 5 RSGI, TRANSFERASE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR Y.ITO,T.HAMADA,F.HAYASHI,S.YOKOYAMA,H.HIROTA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 24-FEB-09 1WVO 1 VERSN REVDAT 2 16-MAY-06 1WVO 1 JRNL REVDAT 1 03-JAN-06 1WVO 0
JRNL AUTH T.HAMADA,Y.ITO,T.ABE,F.HAYASHI,P.GUNTERT,M.INOUE, JRNL AUTH 2 T.KIGAWA,T.TERADA,M.SHIROUZU,M.YOSHIDA,A.TANAKA, JRNL AUTH 3 S.SUGANO,S.YOKOYAMA,H.HIROTA JRNL TITL SOLUTION STRUCTURE OF THE ANTIFREEZE-LIKE DOMAIN JRNL TITL 2 OF HUMAN SIALIC ACID SYNTHASE JRNL REF PROTEIN SCI. V. 15 1010 2006 JRNL REFN ISSN 0961-8368 JRNL PMID 16597820 JRNL DOI 10.1110/PS.051700406
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17, OPALP 1.4 REMARK 3 AUTHORS : GUENTERT, P. (CYANA), KORADI, R., BILLETER, M., REMARK 3 GUNTERT, P. (OPALP) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1WVO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-DEC-04. REMARK 100 THE RCSB ID CODE IS RCSB024056.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1MM ANTIFREEZE PROTEIN LIKE REMARK 210 DOMAIN U-15N,13C; 20MM TRIS- REMARK 210 HCL BUFFER (PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 21_2, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9049, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING 3D NMR TECHNIQUES
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 41.00 -75.04 REMARK 500 1 PRO A 33 44.02 -80.47 REMARK 500 1 VAL A 45 93.73 -67.20 REMARK 500 1 ASP A 56 13.06 56.92 REMARK 500 1 LYS A 69 -65.03 -99.14 REMARK 500 1 ILE A 71 39.60 -74.93 REMARK 500 2 SER A 77 -122.90 -104.30 REMARK 500 3 VAL A 30 98.62 -59.63 REMARK 500 3 VAL A 45 91.29 -67.68 REMARK 500 4 GLU A 62 4.33 -65.66 REMARK 500 4 ASN A 66 135.55 179.73 REMARK 500 5 HIS A 67 -67.28 64.43 REMARK 500 5 LYS A 69 -4.48 154.68 REMARK 500 5 SER A 73 92.87 -62.40 REMARK 500 5 SER A 78 80.34 -154.62 REMARK 500 6 SER A 5 24.92 -140.79 REMARK 500 6 VAL A 45 98.70 -60.78 REMARK 500 7 SER A 2 -67.12 -131.41 REMARK 500 7 SER A 5 79.44 -153.97 REMARK 500 7 PRO A 33 31.65 -73.30 REMARK 500 7 HIS A 67 94.34 -63.63 REMARK 500 7 SER A 74 -170.70 -170.23 REMARK 500 8 SER A 6 -105.42 -102.83 REMARK 500 8 ASP A 56 1.20 82.87 REMARK 500 8 ASN A 66 114.94 173.18 REMARK 500 8 SER A 73 -168.36 -75.47 REMARK 500 9 SER A 5 -68.11 -161.46 REMARK 500 9 LYS A 70 109.38 -59.08 REMARK 500 9 SER A 73 -77.70 -78.60 REMARK 500 9 PRO A 76 9.65 -68.88 REMARK 500 9 SER A 78 -26.01 -169.92 REMARK 500 10 PRO A 33 28.80 -77.80 REMARK 500 10 ASP A 56 -6.18 72.47 REMARK 500 10 ILE A 59 93.73 -67.26 REMARK 500 11 SER A 5 127.91 -171.71 REMARK 500 12 SER A 2 -48.69 -148.32 REMARK 500 12 LYS A 34 106.15 -48.54 REMARK 500 12 HIS A 67 -55.72 -147.20 REMARK 500 12 LYS A 69 -57.36 -135.58 REMARK 500 12 PRO A 76 15.36 -67.73 REMARK 500 13 VAL A 30 89.99 -66.99 REMARK 500 13 SER A 78 -167.57 -79.12 REMARK 500 14 LYS A 34 95.32 -67.47 REMARK 500 14 ASP A 56 8.29 58.63 REMARK 500 15 SER A 2 -71.18 -54.09 REMARK 500 15 LYS A 70 105.98 -161.67 REMARK 500 15 SER A 73 -67.64 -123.38 REMARK 500 15 SER A 77 48.86 -73.79 REMARK 500 16 PRO A 33 36.23 -73.82 REMARK 500 16 VAL A 45 99.19 -68.05 REMARK 500 16 LYS A 69 -77.20 -125.89 REMARK 500 16 SER A 73 104.43 -57.40 REMARK 500 17 ASP A 56 -1.07 69.63 REMARK 500 17 LYS A 69 -24.91 -157.01 REMARK 500 17 SER A 77 35.67 -152.30 REMARK 500 18 SER A 2 -178.64 -67.99 REMARK 500 18 PRO A 33 13.02 -66.46 REMARK 500 19 LYS A 69 38.21 -72.22 REMARK 500 19 LYS A 72 -78.32 -131.77 REMARK 500 20 SER A 6 160.35 166.50 REMARK 500 20 LYS A 34 92.91 -68.63 REMARK 500 20 ASP A 56 11.58 59.23 REMARK 500 20 LYS A 69 50.14 -116.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 36 0.07 SIDE_CHAIN REMARK 500 10 TYR A 36 0.07 SIDE_CHAIN REMARK 500 11 TYR A 36 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001002155.1 RELATED DB: TARGETDB
DBREF 1WVO A 8 73 UNP Q9NR45 SIAS_HUMAN 294 359
SEQADV 1WVO GLY A 1 UNP Q9NR45 CLONING ARTIFACT SEQADV 1WVO SER A 2 UNP Q9NR45 CLONING ARTIFACT SEQADV 1WVO SER A 3 UNP Q9NR45 CLONING ARTIFACT SEQADV 1WVO GLY A 4 UNP Q9NR45 CLONING ARTIFACT SEQADV 1WVO SER A 5 UNP Q9NR45 CLONING ARTIFACT SEQADV 1WVO SER A 6 UNP Q9NR45 CLONING ARTIFACT SEQADV 1WVO GLY A 7 UNP Q9NR45 CLONING ARTIFACT SEQADV 1WVO SER A 74 UNP Q9NR45 CLONING ARTIFACT SEQADV 1WVO GLY A 75 UNP Q9NR45 CLONING ARTIFACT SEQADV 1WVO PRO A 76 UNP Q9NR45 CLONING ARTIFACT SEQADV 1WVO SER A 77 UNP Q9NR45 CLONING ARTIFACT SEQADV 1WVO SER A 78 UNP Q9NR45 CLONING ARTIFACT SEQADV 1WVO GLY A 79 UNP Q9NR45 CLONING ARTIFACT
SEQRES 1 A 79 GLY SER SER GLY SER SER GLY SER VAL VAL ALA LYS VAL SEQRES 2 A 79 LYS ILE PRO GLU GLY THR ILE LEU THR MET ASP MET LEU SEQRES 3 A 79 THR VAL LYS VAL GLY GLU PRO LYS GLY TYR PRO PRO GLU SEQRES 4 A 79 ASP ILE PHE ASN LEU VAL GLY LYS LYS VAL LEU VAL THR SEQRES 5 A 79 VAL GLU GLU ASP ASP THR ILE MET GLU GLU LEU VAL ASP SEQRES 6 A 79 ASN HIS GLY LYS LYS ILE LYS SER SER GLY PRO SER SER SEQRES 7 A 79 GLY
HELIX 1 1 THR A 22 ASP A 24 5 3 HELIX 2 2 ASP A 40 VAL A 45 1 6 HELIX 3 3 MET A 60 VAL A 64 5 5
SHEET 1 A 2 SER A 8 ALA A 11 0 SHEET 2 A 2 LEU A 26 LYS A 29 -1 O LYS A 29 N SER A 8
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000