10 20 30 40 50 60 70 80 1WVL - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL PROTEIN/DNA 16-DEC-04 1WVL
TITLE CRYSTAL STRUCTURE OF MULTIMERIC DNA-BINDING PROTEIN SAC7D- TITLE 2 GCN4 WITH DNA DECAMER
COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*CP*CP*TP*AP*TP*AP*TP*AP*GP*G)-3'; COMPND 3 CHAIN: C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA-BINDING PROTEINS 7A/7B/7D, GCN4; COMPND 7 CHAIN: A, B; COMPND 8 SYNONYM: SAC7D-GCN4 FUSION PROTEIN; COMPND 9 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: SULFOLOBUS ACIDOCALDARIUS; SOURCE 5 ORGANISM_TAXID: 2285; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-11A
KEYWDS LEUCINE ZIPPER, PROTEIN ENGINEERING, SYNCHROTRON RADIATION, KEYWDS 2 THERMOPHILE, X-RAY CRYSTALLOGRAPHY, STRUCTURAL PROTEIN/DNA KEYWDS 3 COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR S.W.WU,A.H.WANG
REVDAT 3 24-FEB-09 1WVL 1 VERSN REVDAT 2 30-AUG-05 1WVL 1 JRNL REVDAT 1 02-AUG-05 1WVL 0
JRNL AUTH S.W.WU,T.P.KO,C.C.CHOU,A.H.WANG JRNL TITL DESIGN AND CHARACTERIZATION OF A MULTIMERIC DNA JRNL TITL 2 BINDING PROTEIN USING SAC7D AND GCN4 AS TEMPLATES JRNL REF PROTEINS V. 60 617 2005 JRNL REFN ISSN 0887-3585 JRNL PMID 16028219 JRNL DOI 10.1002/PROT.20524
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 10550 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 526 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3880 REMARK 3 BIN FREE R VALUE : 0.4280 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 86 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.046 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1286 REMARK 3 NUCLEIC ACID ATOMS : 389 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.79 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.85 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.029 REMARK 3 BOND ANGLES (DEGREES) : 2.51 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1WVL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-DEC-04. REMARK 100 THE RCSB ID CODE IS RCSB024053.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-03 REMARK 200 TEMPERATURE (KELVIN) : 116 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MSC CONFOCAL OPTICS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10690 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1AZP REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M TRI-SODIUM CITRATE, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.34000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.67000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 140.01000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 93.34000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 140.01000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 46.67000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER GENERATED FROM THE REMARK 300 DIMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: -1+Y, 1+X, 3/4-Z.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -58.65000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 58.65000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 140.01000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 214 LIES ON A SPECIAL POSITION.
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DC C 101 O5' C5' C4' O4' C3' C2' C1' REMARK 470 DC C 101 N1 C2 O2 N3 C4 N4 C5 REMARK 470 DC C 101 C6
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 216 O HOH B 249 7555 0.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 1 N - CA - CB ANGL. DEV. = 15.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 12 99.91 -64.95 REMARK 500 GLU A 14 106.08 -169.53 REMARK 500 GLU A 47 -39.79 -33.70 REMARK 500 ALA A 74 -76.43 -75.40 REMARK 500 VAL A 75 -11.88 -47.35 REMARK 500 GLU A 76 -71.89 -80.70 REMARK 500 GLU A 78 48.63 -76.14 REMARK 500 LEU A 79 -105.54 -58.12 REMARK 500 ASN B 37 70.89 73.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DT C 105 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 215 DISTANCE = 8.11 ANGSTROMS REMARK 525 HOH D 225 DISTANCE = 8.61 ANGSTROMS REMARK 525 HOH D 237 DISTANCE = 8.96 ANGSTROMS REMARK 525 HOH A 213 DISTANCE = 7.60 ANGSTROMS REMARK 525 HOH C 241 DISTANCE = 8.64 ANGSTROMS REMARK 525 HOH D 238 DISTANCE = 14.42 ANGSTROMS REMARK 525 HOH A 214 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH D 252 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH C 310 DISTANCE = 9.34 ANGSTROMS REMARK 525 HOH D 263 DISTANCE = 9.76 ANGSTROMS REMARK 525 HOH C 326 DISTANCE = 8.36 ANGSTROMS REMARK 525 HOH D 269 DISTANCE = 9.12 ANGSTROMS REMARK 525 HOH A 223 DISTANCE = 9.64 ANGSTROMS REMARK 525 HOH B 216 DISTANCE = 10.53 ANGSTROMS REMARK 525 HOH D 283 DISTANCE = 7.83 ANGSTROMS REMARK 525 HOH B 217 DISTANCE = 5.37 ANGSTROMS REMARK 525 HOH D 292 DISTANCE = 9.42 ANGSTROMS REMARK 525 HOH D 294 DISTANCE = 5.57 ANGSTROMS REMARK 525 HOH A 231 DISTANCE = 5.31 ANGSTROMS REMARK 525 HOH D 316 DISTANCE = 15.38 ANGSTROMS REMARK 525 HOH A 232 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH B 222 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH D 321 DISTANCE = 15.32 ANGSTROMS REMARK 525 HOH A 233 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH B 224 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH D 323 DISTANCE = 10.88 ANGSTROMS REMARK 525 HOH B 227 DISTANCE = 8.97 ANGSTROMS REMARK 525 HOH D 325 DISTANCE = 14.21 ANGSTROMS REMARK 525 HOH A 235 DISTANCE = 8.67 ANGSTROMS REMARK 525 HOH D 336 DISTANCE = 12.95 ANGSTROMS REMARK 525 HOH B 244 DISTANCE = 5.19 ANGSTROMS REMARK 525 HOH B 245 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A 242 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH A 247 DISTANCE = 5.53 ANGSTROMS REMARK 525 HOH B 248 DISTANCE = 8.76 ANGSTROMS REMARK 525 HOH A 251 DISTANCE = 7.14 ANGSTROMS REMARK 525 HOH B 249 DISTANCE = 9.28 ANGSTROMS REMARK 525 HOH B 256 DISTANCE = 8.06 ANGSTROMS REMARK 525 HOH A 257 DISTANCE = 18.79 ANGSTROMS REMARK 525 HOH A 258 DISTANCE = 8.44 ANGSTROMS REMARK 525 HOH B 266 DISTANCE = 7.07 ANGSTROMS REMARK 525 HOH A 261 DISTANCE = 8.45 ANGSTROMS REMARK 525 HOH B 268 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH A 262 DISTANCE = 7.66 ANGSTROMS REMARK 525 HOH A 264 DISTANCE = 7.73 ANGSTROMS REMARK 525 HOH A 265 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH A 276 DISTANCE = 7.07 ANGSTROMS REMARK 525 HOH B 274 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH A 280 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH B 278 DISTANCE = 14.28 ANGSTROMS REMARK 525 HOH A 282 DISTANCE = 14.61 ANGSTROMS REMARK 525 HOH B 293 DISTANCE = 5.35 ANGSTROMS REMARK 525 HOH A 287 DISTANCE = 8.13 ANGSTROMS REMARK 525 HOH B 301 DISTANCE = 7.09 ANGSTROMS REMARK 525 HOH A 288 DISTANCE = 13.03 ANGSTROMS REMARK 525 HOH B 302 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A 289 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH B 303 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A 290 DISTANCE = 7.41 ANGSTROMS REMARK 525 HOH B 307 DISTANCE = 11.75 ANGSTROMS REMARK 525 HOH B 313 DISTANCE = 5.27 ANGSTROMS REMARK 525 HOH A 296 DISTANCE = 10.17 ANGSTROMS REMARK 525 HOH B 314 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH A 297 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A 298 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A 299 DISTANCE = 16.31 ANGSTROMS REMARK 525 HOH B 330 DISTANCE = 5.03 ANGSTROMS REMARK 525 HOH A 300 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH B 331 DISTANCE = 15.03 ANGSTROMS REMARK 525 HOH B 335 DISTANCE = 9.92 ANGSTROMS REMARK 525 HOH A 306 DISTANCE = 5.19 ANGSTROMS REMARK 525 HOH B 337 DISTANCE = 11.93 ANGSTROMS REMARK 525 HOH B 340 DISTANCE = 5.77 ANGSTROMS REMARK 525 HOH A 309 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH A 311 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 317 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH B 344 DISTANCE = 7.25 ANGSTROMS REMARK 525 HOH B 345 DISTANCE = 5.01 ANGSTROMS REMARK 525 HOH A 320 DISTANCE = 7.76 ANGSTROMS REMARK 525 HOH A 324 DISTANCE = 7.41 ANGSTROMS REMARK 525 HOH A 327 DISTANCE = 6.99 ANGSTROMS REMARK 525 HOH A 332 DISTANCE = 7.31 ANGSTROMS REMARK 525 HOH A 334 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 338 DISTANCE = 20.78 ANGSTROMS REMARK 525 HOH A 339 DISTANCE = 5.17 ANGSTROMS REMARK 525 HOH A 341 DISTANCE = 8.55 ANGSTROMS REMARK 525 HOH A 346 DISTANCE = 6.57 ANGSTROMS
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AZP RELATED DB: PDB REMARK 900 HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D BOUND WITH REMARK 900 KINKED DNA DUPLEX REMARK 900 RELATED ID: 1WD0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF THE HYPERTHERMOPHILIC CHROMOSOMAL REMARK 900 PROTEIN SAC7D IN COMPLEX WITH DNA DECAMERS
DBREF 1WVL A 1 66 UNP P13123 DN71_SULAC 0 65 DBREF 1WVL C 101 110 PDB 1WVL 1WVL 101 110 DBREF 1WVL D 111 120 PDB 1WVL 1WVL 111 120 DBREF 1WVL B 1 80 PDB 1WVL 1WVL 1 80
SEQRES 1 C 10 DC DC DT DA DT DA DT DA DG DG SEQRES 1 D 10 DC DC DT DA DT DA DT DA DG DG SEQRES 1 A 80 MET VAL LYS VAL LYS PHE LYS TYR LYS GLY GLU GLU LYS SEQRES 2 A 80 GLU VAL ASP THR SER LYS ILE LYS LYS VAL TRP ARG VAL SEQRES 3 A 80 GLY LYS MET VAL SER PHE THR TYR ASP ASP ASN GLY LYS SEQRES 4 A 80 THR GLY ARG GLY ALA VAL SER GLU LYS ASP ALA PRO LYS SEQRES 5 A 80 GLU LEU LEU ASP MET LEU ALA ARG ALA GLU ARG GLU LYS SEQRES 6 A 80 LYS GLY VAL LEU LYS LYS LEU ARG ALA VAL GLU ASN GLU SEQRES 7 A 80 LEU HIS SEQRES 1 B 80 MET VAL LYS VAL LYS PHE LYS TYR LYS GLY GLU GLU LYS SEQRES 2 B 80 GLU VAL ASP THR SER LYS ILE LYS LYS VAL TRP ARG VAL SEQRES 3 B 80 GLY LYS MET VAL SER PHE THR TYR ASP ASP ASN GLY LYS SEQRES 4 B 80 THR GLY ARG GLY ALA VAL SER GLU LYS ASP ALA PRO LYS SEQRES 5 B 80 GLU LEU LEU ASP MET LEU ALA ARG ALA GLU ARG GLU LYS SEQRES 6 B 80 LYS GLY VAL LEU LYS LYS LEU ARG ALA VAL GLU ASN GLU SEQRES 7 B 80 LEU HIS
FORMUL 5 HOH *146(H2 O)
HELIX 1 1 LYS A 48 ALA A 50 5 3 HELIX 2 3 LYS B 48 ALA B 50 5 3
SHEET 1 A 2 LYS A 3 TYR A 8 0 SHEET 2 A 2 GLU A 11 ASP A 16 -1 O GLU A 11 N TYR A 8 SHEET 1 B 3 ILE A 20 VAL A 26 0 SHEET 2 B 3 MET A 29 ASP A 36 -1 O THR A 33 N LYS A 21 SHEET 3 B 3 LYS A 39 SER A 46 -1 O GLY A 41 N TYR A 34 SHEET 1 C 2 LYS B 3 TYR B 8 0 SHEET 2 C 2 GLU B 11 ASP B 16 -1 O LYS B 13 N PHE B 6 SHEET 1 D 3 ILE B 20 VAL B 26 0 SHEET 2 D 3 MET B 29 ASP B 35 -1 O SER B 31 N TRP B 24 SHEET 3 D 3 THR B 40 SER B 46 -1 O GLY B 41 N TYR B 34
CRYST1 58.650 58.650 186.680 90.00 90.00 90.00 P 41 2 2 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.017050 0.000000 0.000000 0.00000
SCALE2 0.000000 0.017050 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005357 0.00000