10 20 30 40 50 60 70 80 1WSV - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 11-NOV-04 1WSV
TITLE CRYSTAL STRUCTURE OF HUMAN T-PROTEIN OF GLYCINE CLEAVAGE TITLE 2 SYSTEM
COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOMETHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLYCINE CLEAVAGE SYSTEM T PROTEIN, GCVT; COMPND 5 EC: 2.1.2.10; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GCST; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3
KEYWDS GLYCINE-CLEAVAGE SYTEM, AMINOMETHYL TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR K.OKAMURA-IKEDA,H.HOSAKA,M.YOSHIMURA,E.YAMASHITA,S.TOMA, AUTHOR 2 A.NAKAGAWA,K.FUJIWARA,Y.MOTOKAWA,H.TANIGUCHI
REVDAT 2 24-FEB-09 1WSV 1 VERSN REVDAT 1 16-AUG-05 1WSV 0
JRNL AUTH K.OKAMURA-IKEDA,H.HOSAKA,M.YOSHIMURA,E.YAMASHITA, JRNL AUTH 2 S.TOMA,A.NAKAGAWA,K.FUJIWARA,Y.MOTOKAWA,H.TANIGUCHI JRNL TITL CRYSTAL STRUCTURE OF HUMAN T-PROTEIN OF GLYCINE JRNL TITL 2 CLEAVAGE SYSTEM AT 2.0A RESOLUTION AND ITS JRNL TITL 3 IMPLICATION FOR UNDERSTANDING NON-KETOTIC JRNL TITL 4 HYPERGLYCINEMIA JRNL REF J.MOL.BIOL. V. 351 1146 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16051266 JRNL DOI 10.1016/J.JMB.2005.06.056
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1895629.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 28768 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1434 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4079 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 215 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5656 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 121 REMARK 3 SOLVENT ATOMS : 698 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.37000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : -1.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.30 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.44 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.83 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.290 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.150 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.130 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.190 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 46.88 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : C2F.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : C2F.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1WSV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-NOV-04. REMARK 100 THE RCSB ID CODE IS RCSB023960.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : BRUKER DIP-6040 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28804 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 80.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.42100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1WSR REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, POTASSIUM SODIUM REMARK 280 TARTRATE, CITRATE, PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.33500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.88000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.53000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.88000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.33500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.53000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 GLN A 2 REMARK 465 GLU A 3 REMARK 465 LYS A 375 REMARK 465 ALA B 1 REMARK 465 GLN B 2 REMARK 465 GLU B 3 REMARK 465 LYS B 375
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 33 -136.05 -121.54 REMARK 500 HIS A 47 -98.55 -131.76 REMARK 500 ASP A 100 150.03 171.31 REMARK 500 ASN A 149 152.64 -45.62 REMARK 500 LEU A 174 75.61 -115.29 REMARK 500 PHE A 185 56.00 34.69 REMARK 500 TYR A 197 36.24 -140.44 REMARK 500 ASN A 247 -64.81 -107.41 REMARK 500 TYR B 33 -131.33 -117.11 REMARK 500 HIS B 47 -87.95 -139.16 REMARK 500 CYS B 48 145.20 169.64 REMARK 500 ASP B 100 154.75 179.40 REMARK 500 TYR B 197 31.79 -141.13 REMARK 500 ASN B 247 -70.17 -122.00 REMARK 500 ASP B 250 -169.97 -164.20 REMARK 500 ASP B 273 30.18 -98.43 REMARK 500 LYS B 285 51.00 -95.91 REMARK 500 ARG B 287 38.64 -58.79 REMARK 500 HIS B 305 -9.74 85.16 REMARK 500 ARG B 354 -27.54 82.19 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2001 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2002 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2003 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2004 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2005 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2006 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2007 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2008 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2009 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2010 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2011 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THH A 3001 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THH B 4001
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WSR RELATED DB: PDB REMARK 900 THE SAME PROTEIN
DBREF 1WSV A 1 375 UNP P48728 GCST_HUMAN 29 403 DBREF 1WSV B 1 375 UNP P48728 GCST_HUMAN 29 403
SEQRES 1 A 375 ALA GLN GLU VAL LEU ARG ARG THR PRO LEU TYR ASP PHE SEQRES 2 A 375 HIS LEU ALA HIS GLY GLY LYS MET VAL ALA PHE ALA GLY SEQRES 3 A 375 TRP SER LEU PRO VAL GLN TYR ARG ASP SER HIS THR ASP SEQRES 4 A 375 SER HIS LEU HIS THR ARG GLN HIS CYS SER LEU PHE ASP SEQRES 5 A 375 VAL SER HIS MET LEU GLN THR LYS ILE LEU GLY SER ASP SEQRES 6 A 375 ARG VAL LYS LEU MET GLU SER LEU VAL VAL GLY ASP ILE SEQRES 7 A 375 ALA GLU LEU ARG PRO ASN GLN GLY THR LEU SER LEU PHE SEQRES 8 A 375 THR ASN GLU ALA GLY GLY ILE LEU ASP ASP LEU ILE VAL SEQRES 9 A 375 THR ASN THR SER GLU GLY HIS LEU TYR VAL VAL SER ASN SEQRES 10 A 375 ALA GLY CYS TRP GLU LYS ASP LEU ALA LEU MET GLN ASP SEQRES 11 A 375 LYS VAL ARG GLU LEU GLN ASN GLN GLY ARG ASP VAL GLY SEQRES 12 A 375 LEU GLU VAL LEU ASP ASN ALA LEU LEU ALA LEU GLN GLY SEQRES 13 A 375 PRO THR ALA ALA GLN VAL LEU GLN ALA GLY VAL ALA ASP SEQRES 14 A 375 ASP LEU ARG LYS LEU PRO PHE MET THR SER ALA VAL MET SEQRES 15 A 375 GLU VAL PHE GLY VAL SER GLY CYS ARG VAL THR ARG CYS SEQRES 16 A 375 GLY TYR THR GLY GLU ASP GLY VAL GLU ILE SER VAL PRO SEQRES 17 A 375 VAL ALA GLY ALA VAL HIS LEU ALA THR ALA ILE LEU LYS SEQRES 18 A 375 ASN PRO GLU VAL LYS LEU ALA GLY LEU ALA ALA ARG ASP SEQRES 19 A 375 SER LEU ARG LEU GLU ALA GLY LEU CYS LEU TYR GLY ASN SEQRES 20 A 375 ASP ILE ASP GLU HIS THR THR PRO VAL GLU GLY SER LEU SEQRES 21 A 375 SER TRP THR LEU GLY LYS ARG ARG ARG ALA ALA MET ASP SEQRES 22 A 375 PHE PRO GLY ALA LYS VAL ILE VAL PRO GLN LEU LYS GLY SEQRES 23 A 375 ARG VAL GLN ARG ARG ARG VAL GLY LEU MET CYS GLU GLY SEQRES 24 A 375 ALA PRO MET ARG ALA HIS SER PRO ILE LEU ASN MET GLU SEQRES 25 A 375 GLY THR LYS ILE GLY THR VAL THR SER GLY CYS PRO SER SEQRES 26 A 375 PRO SER LEU LYS LYS ASN VAL ALA MET GLY TYR VAL PRO SEQRES 27 A 375 CYS GLU TYR SER ARG PRO GLY THR MET LEU LEU VAL GLU SEQRES 28 A 375 VAL ARG ARG LYS GLN GLN MET ALA VAL VAL SER LYS MET SEQRES 29 A 375 PRO PHE VAL PRO THR ASN TYR TYR THR LEU LYS SEQRES 1 B 375 ALA GLN GLU VAL LEU ARG ARG THR PRO LEU TYR ASP PHE SEQRES 2 B 375 HIS LEU ALA HIS GLY GLY LYS MET VAL ALA PHE ALA GLY SEQRES 3 B 375 TRP SER LEU PRO VAL GLN TYR ARG ASP SER HIS THR ASP SEQRES 4 B 375 SER HIS LEU HIS THR ARG GLN HIS CYS SER LEU PHE ASP SEQRES 5 B 375 VAL SER HIS MET LEU GLN THR LYS ILE LEU GLY SER ASP SEQRES 6 B 375 ARG VAL LYS LEU MET GLU SER LEU VAL VAL GLY ASP ILE SEQRES 7 B 375 ALA GLU LEU ARG PRO ASN GLN GLY THR LEU SER LEU PHE SEQRES 8 B 375 THR ASN GLU ALA GLY GLY ILE LEU ASP ASP LEU ILE VAL SEQRES 9 B 375 THR ASN THR SER GLU GLY HIS LEU TYR VAL VAL SER ASN SEQRES 10 B 375 ALA GLY CYS TRP GLU LYS ASP LEU ALA LEU MET GLN ASP SEQRES 11 B 375 LYS VAL ARG GLU LEU GLN ASN GLN GLY ARG ASP VAL GLY SEQRES 12 B 375 LEU GLU VAL LEU ASP ASN ALA LEU LEU ALA LEU GLN GLY SEQRES 13 B 375 PRO THR ALA ALA GLN VAL LEU GLN ALA GLY VAL ALA ASP SEQRES 14 B 375 ASP LEU ARG LYS LEU PRO PHE MET THR SER ALA VAL MET SEQRES 15 B 375 GLU VAL PHE GLY VAL SER GLY CYS ARG VAL THR ARG CYS SEQRES 16 B 375 GLY TYR THR GLY GLU ASP GLY VAL GLU ILE SER VAL PRO SEQRES 17 B 375 VAL ALA GLY ALA VAL HIS LEU ALA THR ALA ILE LEU LYS SEQRES 18 B 375 ASN PRO GLU VAL LYS LEU ALA GLY LEU ALA ALA ARG ASP SEQRES 19 B 375 SER LEU ARG LEU GLU ALA GLY LEU CYS LEU TYR GLY ASN SEQRES 20 B 375 ASP ILE ASP GLU HIS THR THR PRO VAL GLU GLY SER LEU SEQRES 21 B 375 SER TRP THR LEU GLY LYS ARG ARG ARG ALA ALA MET ASP SEQRES 22 B 375 PHE PRO GLY ALA LYS VAL ILE VAL PRO GLN LEU LYS GLY SEQRES 23 B 375 ARG VAL GLN ARG ARG ARG VAL GLY LEU MET CYS GLU GLY SEQRES 24 B 375 ALA PRO MET ARG ALA HIS SER PRO ILE LEU ASN MET GLU SEQRES 25 B 375 GLY THR LYS ILE GLY THR VAL THR SER GLY CYS PRO SER SEQRES 26 B 375 PRO SER LEU LYS LYS ASN VAL ALA MET GLY TYR VAL PRO SEQRES 27 B 375 CYS GLU TYR SER ARG PRO GLY THR MET LEU LEU VAL GLU SEQRES 28 B 375 VAL ARG ARG LYS GLN GLN MET ALA VAL VAL SER LYS MET SEQRES 29 B 375 PRO PHE VAL PRO THR ASN TYR TYR THR LEU LYS
HET SO4 A2001 5 HET SO4 A2002 5 HET SO4 A2003 5 HET SO4 A2004 5 HET SO4 A2005 5 HET SO4 A2006 5 HET SO4 B2007 5 HET SO4 A2008 5 HET SO4 B2009 5 HET SO4 B2010 5 HET SO4 A2011 5 HET THH A3001 33 HET THH B4001 33
HETNAM SO4 SULFATE ION HETNAM THH N-[4-({[(6S)-2-AMINO-4-HYDROXY-5-METHYL-5,6,7,8- HETNAM 2 THH TETRAHYDROPTERIDIN-6-YL]METHYL}AMINO)BENZOYL]-L- HETNAM 3 THH GLUTAMIC ACID
HETSYN THH 5-METHYLTETRAHYDROFOLATE
FORMUL 3 SO4 11(O4 S 2-) FORMUL 14 THH 2(C20 H25 N7 O6) FORMUL 16 HOH *698(H2 O)
HELIX 1 1 LEU A 10 HIS A 17 1 8 HELIX 2 2 SER A 36 HIS A 47 1 12 HELIX 3 3 ASP A 65 SER A 72 1 8 HELIX 4 4 CYS A 120 ASN A 137 1 18 HELIX 5 5 THR A 158 ALA A 165 1 8 HELIX 6 6 ASP A 170 LEU A 174 5 5 HELIX 7 7 PRO A 208 LYS A 221 1 14 HELIX 8 8 GLY A 229 ALA A 240 1 12 HELIX 9 9 LEU A 260 LEU A 264 5 5 HELIX 10 10 GLY A 265 MET A 272 1 8 HELIX 11 11 GLY A 276 LYS A 285 1 10 HELIX 12 12 GLU A 340 SER A 342 5 3 HELIX 13 13 LEU B 10 HIS B 17 1 8 HELIX 14 14 SER B 36 HIS B 47 1 12 HELIX 15 15 ASP B 65 SER B 72 1 8 HELIX 16 16 CYS B 120 ASN B 137 1 18 HELIX 17 17 THR B 158 ALA B 165 1 8 HELIX 18 18 ASP B 170 LEU B 174 5 5 HELIX 19 19 PRO B 208 LYS B 221 1 14 HELIX 20 20 GLY B 229 ALA B 240 1 12 HELIX 21 21 LEU B 260 LEU B 264 5 5 HELIX 22 22 GLY B 265 MET B 272 1 8 HELIX 23 23 GLY B 276 LEU B 284 1 9 HELIX 24 24 PRO B 338 SER B 342 5 5
SHEET 1 A 2 MET A 21 PHE A 24 0 SHEET 2 A 2 TRP A 27 PRO A 30 -1 O TRP A 27 N PHE A 24 SHEET 1 B 6 SER A 179 VAL A 184 0 SHEET 2 B 6 VAL A 187 THR A 193 -1 O VAL A 192 N ALA A 180 SHEET 3 B 6 GLY A 202 VAL A 207 -1 O SER A 206 N ARG A 191 SHEET 4 B 6 ALA A 150 GLN A 155 -1 N LEU A 152 O ILE A 205 SHEET 5 B 6 CYS A 48 ASP A 52 -1 N PHE A 51 O ALA A 153 SHEET 6 B 6 VAL A 225 LEU A 227 1 O LYS A 226 N LEU A 50 SHEET 1 C 5 GLN A 85 THR A 92 0 SHEET 2 C 5 ILE A 98 ASN A 106 -1 O LEU A 99 N PHE A 91 SHEET 3 C 5 LEU A 112 SER A 116 -1 O TYR A 113 N THR A 105 SHEET 4 C 5 LEU A 57 LEU A 62 -1 N THR A 59 O VAL A 114 SHEET 5 C 5 GLY A 143 VAL A 146 -1 O GLY A 143 N LEU A 62 SHEET 1 D 7 ARG A 290 CYS A 297 0 SHEET 2 D 7 LYS A 330 PRO A 338 -1 O GLY A 335 N VAL A 293 SHEET 3 D 7 LYS A 315 SER A 325 -1 N SER A 325 O LYS A 330 SHEET 4 D 7 PRO A 307 LEU A 309 -1 N ILE A 308 O ILE A 316 SHEET 5 D 7 MET A 347 GLU A 351 -1 O LEU A 349 N LEU A 309 SHEET 6 D 7 GLN A 356 SER A 362 -1 O ALA A 359 N LEU A 348 SHEET 7 D 7 ARG A 290 CYS A 297 -1 N GLY A 294 O SER A 362 SHEET 1 E 2 MET B 21 PHE B 24 0 SHEET 2 E 2 TRP B 27 PRO B 30 -1 O TRP B 27 N PHE B 24 SHEET 1 F 6 SER B 179 VAL B 184 0 SHEET 2 F 6 VAL B 187 THR B 193 -1 O VAL B 192 N ALA B 180 SHEET 3 F 6 GLY B 202 VAL B 207 -1 O SER B 206 N ARG B 191 SHEET 4 F 6 ALA B 150 GLN B 155 -1 N ALA B 150 O VAL B 207 SHEET 5 F 6 SER B 49 ASP B 52 -1 N PHE B 51 O ALA B 153 SHEET 6 F 6 LYS B 226 LEU B 227 1 O LYS B 226 N LEU B 50 SHEET 1 G 5 GLN B 85 THR B 92 0 SHEET 2 G 5 ILE B 98 ASN B 106 -1 O LEU B 99 N PHE B 91 SHEET 3 G 5 LEU B 112 SER B 116 -1 O TYR B 113 N THR B 105 SHEET 4 G 5 LEU B 57 LEU B 62 -1 N THR B 59 O VAL B 114 SHEET 5 G 5 GLY B 143 VAL B 146 -1 O GLU B 145 N LYS B 60 SHEET 1 H 7 ARG B 291 CYS B 297 0 SHEET 2 H 7 LYS B 330 VAL B 337 -1 O ALA B 333 N LEU B 295 SHEET 3 H 7 LYS B 315 SER B 325 -1 N SER B 325 O LYS B 330 SHEET 4 H 7 PRO B 307 LEU B 309 -1 N ILE B 308 O ILE B 316 SHEET 5 H 7 MET B 347 VAL B 352 -1 O LEU B 349 N LEU B 309 SHEET 6 H 7 LYS B 355 SER B 362 -1 O LYS B 355 N VAL B 352 SHEET 7 H 7 ARG B 291 CYS B 297 -1 N GLY B 294 O SER B 362
CISPEP 1 MET A 364 PRO A 365 0 -0.04 CISPEP 2 MET B 364 PRO B 365 0 0.21
SITE 1 AC1 6 HIS A 214 HOH A3167 HOH A3168 ASP B 12 SITE 2 AC1 6 VAL B 213 HOH B4011 SITE 1 AC2 6 ARG A 172 HOH A3201 ARG B 290 GLY B 317 SITE 2 AC2 6 THR B 318 TYR B 336 SITE 1 AC3 5 HIS A 37 ARG A 303 HOH A3137 HOH A3278 SITE 2 AC3 5 HOH A3370 SITE 1 AC4 4 ARG A 303 ARG A 353 HOH A3250 HOH A3270 SITE 1 AC5 3 HIS A 43 LYS A 226 LYS A 278 SITE 1 AC6 2 ARG A 287 HOH A3244 SITE 1 AC7 6 SER B 259 LEU B 260 SER B 261 TRP B 262 SITE 2 AC7 6 ARG B 291 HOH B4094 SITE 1 AC8 8 SER A 259 LEU A 260 SER A 261 TRP A 262 SITE 2 AC8 8 ARG A 291 HOH A3055 HOH A3252 HOH A3336 SITE 1 AC9 3 ARG B 303 ARG B 353 HOH B4029 SITE 1 BC1 5 HIS B 37 ARG B 303 PRO B 324 HOH B4004 SITE 2 BC1 5 HOH B4106 SITE 1 BC2 4 HIS A 17 ARG A 34 ARG B 7 HOH B4160 SITE 1 BC3 21 MET A 56 LEU A 88 ASP A 101 LEU A 102 SITE 2 BC3 21 ILE A 103 VAL A 115 ASN A 117 PHE A 176 SITE 3 BC3 21 MET A 177 GLY A 196 TYR A 197 GLU A 204 SITE 4 BC3 21 ARG A 233 LEU A 242 TRP A 262 TYR A 371 SITE 5 BC3 21 HOH A3016 HOH A3025 HOH A3027 HOH A3198 SITE 6 BC3 21 HOH A3235 SITE 1 BC4 21 MET B 56 THR B 87 LEU B 88 ASP B 101 SITE 2 BC4 21 ILE B 103 VAL B 115 ASN B 117 PHE B 176 SITE 3 BC4 21 MET B 177 GLY B 196 TYR B 197 GLU B 204 SITE 4 BC4 21 ARG B 233 TRP B 262 TYR B 371 HOH B4012 SITE 5 BC4 21 HOH B4050 HOH B4085 HOH B4099 HOH B4110 SITE 6 BC4 21 HOH B4193
CRYST1 54.670 129.060 135.760 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.018292 0.000000 0.000000 0.00000
SCALE2 0.000000 0.007748 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007366 0.00000