10 20 30 40 50 60 70 80 1WR4 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LIGASE 11-OCT-04 1WR4
TITLE SOLUTION STRUCTURE OF THE SECOND WW DOMAIN OF NEDD4-2
COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-PROTEIN LIGASE NEDD4-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SECOND WW DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-4T2
KEYWDS ALL-BETA, LIGASE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR K.KOWALSKI,A.L.MERKEL,G.W.BOOKER
REVDAT 2 24-FEB-09 1WR4 1 VERSN REVDAT 1 18-OCT-05 1WR4 0
JRNL AUTH K.KOWALSKI,A.L.MERKEL,G.W.BOOKER JRNL TITL SOLUTION STRUCTURES OF THE WW DOMAINS OF NEDD4-2 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1WR4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-OCT-04. REMARK 100 THE RCSB ID CODE IS RCSB023901.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5MM WW2; 100MM NACL; 25MM REMARK 210 PHOSPHATE BUFFER; 90% H2O, 10% REMARK 210 D2O; 0.5MM WW2; 100MM NACL; REMARK 210 25MM PHOSPHATE BUFFER; 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1.3, SPARKY 3.1, ARIA REMARK 210 1.2, CNS 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING, REMARK 210 MOLECULAR DYNAMICS, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 15 -27.96 78.46 REMARK 500 1 LYS A 16 42.06 -100.54 REMARK 500 1 TRP A 31 59.56 -95.08 REMARK 500 2 PRO A 3 -135.03 -76.95 REMARK 500 2 SER A 7 92.35 -62.60 REMARK 500 2 ALA A 15 -99.97 62.72 REMARK 500 2 TRP A 31 42.24 -101.48 REMARK 500 2 ILE A 35 41.01 -88.77 REMARK 500 3 PRO A 3 -141.34 -83.00 REMARK 500 3 SER A 7 88.54 -62.55 REMARK 500 3 PRO A 34 87.61 -69.70 REMARK 500 4 SER A 2 71.94 58.02 REMARK 500 4 PRO A 6 35.70 -59.78 REMARK 500 4 SER A 7 -54.27 68.14 REMARK 500 5 SER A 7 93.89 -59.97 REMARK 500 5 ALA A 15 -100.00 60.02 REMARK 500 5 LYS A 16 53.17 -117.55 REMARK 500 6 PRO A 3 75.29 -68.16 REMARK 500 6 ALA A 15 -47.17 170.99 REMARK 500 6 LYS A 16 37.41 -95.32 REMARK 500 6 ILE A 35 62.85 -104.37 REMARK 500 7 ASP A 14 -165.93 -78.84 REMARK 500 7 TRP A 31 46.35 -100.23 REMARK 500 8 SER A 7 95.71 -63.66 REMARK 500 8 ARG A 27 51.70 37.41 REMARK 500 9 SER A 7 99.72 -62.82 REMARK 500 10 ALA A 15 -48.64 168.07 REMARK 500 10 LYS A 16 45.90 -98.59 REMARK 500 10 HIS A 24 38.68 -88.25 REMARK 500 10 ASN A 25 -47.76 -137.30 REMARK 500 11 PRO A 6 -161.47 -61.02 REMARK 500 11 SER A 7 94.20 -56.90 REMARK 500 11 ALA A 15 -58.19 67.77 REMARK 500 11 LYS A 16 30.01 -85.63 REMARK 500 12 SER A 7 92.38 -58.12 REMARK 500 12 ALA A 15 -156.41 -159.76 REMARK 500 12 LYS A 16 32.58 -86.57 REMARK 500 12 ILE A 35 -60.92 72.66 REMARK 500 13 PRO A 6 42.16 -58.41 REMARK 500 13 SER A 7 -59.45 66.43 REMARK 500 13 THR A 29 78.87 -103.67 REMARK 500 13 TRP A 31 58.97 -101.61 REMARK 500 14 PRO A 3 37.91 -76.68 REMARK 500 14 SER A 7 94.73 -59.64 REMARK 500 15 PRO A 3 -117.84 -78.29 REMARK 500 15 ALA A 15 -34.63 73.01 REMARK 500 15 LYS A 16 35.27 -90.02 REMARK 500 15 TRP A 31 40.03 -97.36 REMARK 500 15 PRO A 34 -177.47 -51.64 REMARK 500 16 PRO A 6 -167.14 -59.32 REMARK 500 16 ARG A 12 -166.50 -116.60 REMARK 500 16 ASP A 14 -164.99 -78.48 REMARK 500 17 ARG A 12 -166.15 -121.69 REMARK 500 18 SER A 7 90.06 -64.42 REMARK 500 18 TRP A 31 46.28 -99.39 REMARK 500 19 PRO A 3 44.93 -78.30 REMARK 500 19 PRO A 6 -179.47 -61.00 REMARK 500 19 SER A 7 104.35 -59.12 REMARK 500 20 LEU A 5 174.31 61.51 REMARK 500 20 PRO A 6 171.92 -58.64 REMARK 500 20 ARG A 12 -170.00 -115.18 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WR3 RELATED DB: PDB REMARK 900 THE FIRST WW DOMAIN OF NEDD4-2
DBREF 1WR4 A 3 36 UNP Q8CFI0 NED4L_MOUSE 265 298
SEQADV 1WR4 GLY A 1 UNP Q8CFI0 CLONING ARTIFACT SEQADV 1WR4 SER A 2 UNP Q8CFI0 CLONING ARTIFACT
SEQRES 1 A 36 GLY SER PRO GLY LEU PRO SER GLY TRP GLU GLU ARG LYS SEQRES 2 A 36 ASP ALA LYS GLY ARG THR TYR TYR VAL ASN HIS ASN ASN SEQRES 3 A 36 ARG THR THR THR TRP THR ARG PRO ILE MET
SHEET 1 A 3 TRP A 9 LYS A 13 0 SHEET 2 A 3 THR A 19 ASN A 23 -1 O TYR A 20 N ARG A 12 SHEET 3 A 3 THR A 28 THR A 30 -1 O THR A 30 N TYR A 21
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000