10 20 30 40 50 60 70 80 1WR3 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LIGASE 11-OCT-04 1WR3
TITLE SOLUTION STRUCTURE OF THE FIRST WW DOMAIN OF NEDD4-2
COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-PROTEIN LIGASE NEDD4-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIRST WW DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-4T2
KEYWDS ALL-BETA, LIGASE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR K.KOWALSKI,A.L.MERKEL,G.W.BOOKER
REVDAT 2 24-FEB-09 1WR3 1 VERSN REVDAT 1 18-OCT-05 1WR3 0
JRNL AUTH K.KOWALSKI,A.L.MERKEL,G.W.BOOKER JRNL TITL SOLUTION STRUCTURES OF WW DOMAINS OF NEDD4-2 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1WR3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-OCT-04. REMARK 100 THE RCSB ID CODE IS RCSB023900.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5MM NEDD4-2 WW1; 100MM REMARK 210 NACL; 25MM PHOSPHATE BUFFER; REMARK 210 90% H2O, 10% D2O; 0.5MM NEDD4- REMARK 210 2 WW1; 100MM NACL; 25MM REMARK 210 PHOSPHATE BUFFER; 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1.3, SPARKY 3.1, ARIA REMARK 210 1.1, CNS 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING, REMARK 210 MOLECULAR DYNAMICS, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 33 134.38 67.58 REMARK 500 2 ASN A 25 -80.25 -84.45 REMARK 500 2 ARG A 27 52.00 73.37 REMARK 500 2 ARG A 33 152.71 66.69 REMARK 500 3 ARG A 33 139.54 69.21 REMARK 500 4 PRO A 4 -90.40 -66.22 REMARK 500 4 SER A 35 -59.00 -167.50 REMARK 500 5 THR A 19 95.87 -68.82 REMARK 500 5 ARG A 33 134.18 67.84 REMARK 500 5 PRO A 34 108.18 -59.70 REMARK 500 6 SER A 2 63.66 -159.99 REMARK 500 6 ASN A 15 -31.70 169.87 REMARK 500 6 THR A 29 70.94 -106.00 REMARK 500 6 ARG A 33 138.76 67.85 REMARK 500 6 PRO A 34 46.02 -77.40 REMARK 500 7 SER A 2 -56.68 -148.49 REMARK 500 7 ASN A 25 -61.00 -109.89 REMARK 500 7 ARG A 33 152.28 66.88 REMARK 500 7 PRO A 34 61.25 -62.67 REMARK 500 8 ASN A 15 -46.64 172.45 REMARK 500 8 ASN A 25 -65.61 -93.71 REMARK 500 8 THR A 29 74.29 -115.79 REMARK 500 8 PRO A 34 99.48 -60.07 REMARK 500 9 ASP A 14 -84.29 -99.98 REMARK 500 9 ARG A 33 130.22 -34.68 REMARK 500 10 PRO A 7 107.26 -57.00 REMARK 500 10 THR A 19 96.79 -69.07 REMARK 500 10 ASN A 25 -78.60 -78.92 REMARK 500 10 THR A 29 69.06 -100.21 REMARK 500 10 ARG A 33 133.61 74.41 REMARK 500 10 SER A 35 40.80 -80.73 REMARK 500 11 ASN A 15 -52.29 -127.80 REMARK 500 11 LEU A 16 71.32 -170.61 REMARK 500 11 ARG A 27 51.49 38.38 REMARK 500 11 ARG A 33 144.62 67.30 REMARK 500 11 PRO A 34 62.56 -69.64 REMARK 500 11 SER A 35 -140.86 -90.54 REMARK 500 12 THR A 29 73.66 -100.36 REMARK 500 12 ARG A 33 125.79 66.49 REMARK 500 13 SER A 2 89.55 61.73 REMARK 500 13 PRO A 4 104.61 -57.64 REMARK 500 13 THR A 29 71.97 -113.08 REMARK 500 13 ARG A 33 127.71 71.64 REMARK 500 14 ARG A 27 76.24 44.16 REMARK 500 14 THR A 29 70.87 -110.12 REMARK 500 14 ARG A 33 142.69 65.93 REMARK 500 14 PRO A 34 96.54 -61.97 REMARK 500 15 ARG A 33 130.95 66.55 REMARK 500 15 PRO A 34 86.74 -62.34 REMARK 500 16 LEU A 16 6.32 94.94 REMARK 500 16 ARG A 33 131.47 68.30 REMARK 500 16 SER A 35 25.84 -142.52 REMARK 500 17 THR A 19 99.70 -64.25 REMARK 500 17 ASN A 25 -61.24 -103.03 REMARK 500 17 THR A 29 75.51 -113.87 REMARK 500 17 ARG A 33 153.58 67.08 REMARK 500 18 ASN A 15 -48.23 -157.25 REMARK 500 18 ARG A 33 138.45 67.60 REMARK 500 18 PRO A 34 95.42 -54.99 REMARK 500 19 PRO A 4 -71.81 -65.00 REMARK 500 19 ASN A 25 -70.44 -97.27 REMARK 500 19 ARG A 27 34.60 70.32 REMARK 500 19 THR A 29 79.39 -108.50 REMARK 500 19 ARG A 33 135.77 68.92 REMARK 500 19 PRO A 34 92.57 -67.32 REMARK 500 20 ASP A 14 -112.68 -75.88 REMARK 500 20 THR A 29 72.97 -116.04 REMARK 500 20 ARG A 33 128.70 68.43 REMARK 500 20 PRO A 34 98.97 -67.88 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WR4 RELATED DB: PDB REMARK 900 THE SECOND WW DOMAIN OF NEDD4-2
DBREF 1WR3 A 3 36 UNP Q8CFI0 NED4L_MOUSE 72 105
SEQADV 1WR3 GLY A 1 UNP Q8CFI0 CLONING ARTIFACT SEQADV 1WR3 SER A 2 UNP Q8CFI0 CLONING ARTIFACT
SEQRES 1 A 36 GLY SER PRO PRO LEU PRO PRO GLY TRP GLU GLU LYS VAL SEQRES 2 A 36 ASP ASN LEU GLY ARG THR TYR TYR VAL ASN HIS ASN ASN SEQRES 3 A 36 ARG SER THR GLN TRP HIS ARG PRO SER LEU
SHEET 1 A 3 TRP A 9 VAL A 13 0 SHEET 2 A 3 THR A 19 ASN A 23 -1 O VAL A 22 N GLU A 10 SHEET 3 A 3 THR A 29 GLN A 30 -1 O GLN A 30 N TYR A 21
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000