1WQ0 - Header Asymmetric Unit

HEADER ELECTRON TRANSPORT 17-SEP-04 1WQ0

TITLE HOMOLOGY MODELLING OF THE INTERMEDIATE REGION OF SOXD

COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: INETRMEDIATE REGION; COMPND 5 SYNONYM: SOXD A DI-HEME CYTOCHROME C PROTEIN

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARACOCCUS DENITRIFICANS; SOURCE 3 ORGANISM_COMMON: BACTERIA; SOURCE 4 STRAIN: GB17

KEYWDS ELECTRON TRANSPORT PROTEIN

EXPDTA THEORETICAL MODEL

AUTHOR A.BAGCHI,P.ROY

REVDAT 1 05-OCT-04 1WQ0 0

JRNL AUTH A.BAGCHI,P.ROY JRNL TITL HOMOLOGY MODELLING OF SOXD, A DI-HEME CYTOCHROME C JRNL TITL 2 PROTEIN FROM PARACOCCUS DENITRIFICANS GB17 JRNL REF TO BE PUBLISHED JRNL REFN

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : INSIGHT II REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1WQ0 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-SEP-2004. REMARK 100 THE RCSB ID CODE IS RCSB023868.

REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: MODELING PROGRAM : HOMOLOGY MODULE OF INSIGHT II REMARK 220 THE MODEL IS BASED UPON THE COORDINATES OF 1R8K (X-RAY REMARK 220 DIFFRACTION) FOLLOWED BY INSIGHT II REFINING

REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 184 -129.81 174.85 REMARK 500 MET A 263 139.16 83.57 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 164 PRO A 165 134.46 REMARK 500 GLN A 177 THR A 178 128.15 REMARK 500 GLY A 214 ARG A 215 -149.16 REMARK 500 ALA A 227 ALA A 228 138.74 REMARK 500 ALA A 251 ALA A 252 -133.51 REMARK 500 VAL A 258 LYS A 259 -147.25 REMARK 500 ALA A 269 PRO A 270 138.45

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2APD RELATED DB: PDB REMARK 900 SOXD, A DI-HEME CYTOCHROME C PROTEIN REMARK 900 RELATED ID: 1WPZ RELATED DB: PDB REMARK 900 N-TERMINAL DOMAIN SOXD, A DI-HEME CYTOCHROME C PROTEIN

DBREF 1WQ0 A 153 275 GB 2222779 CAA55825 153 275

SEQRES 1 A 123 VAL LEU THR HIS GLU ASN PHE THR GLN VAL VAL LEU PRO SEQRES 2 A 123 ASN ALA GLU GLY PHE TYR PRO ASP ASP ARG ASP GLN THR SEQRES 3 A 123 GLU TYR PRO LEU PHE SER LYS GLU PRO CYS MET THR ASP SEQRES 4 A 123 CYS ALA VAL GLY VAL GLU ILE THR LYS ARG ALA VAL ASP SEQRES 5 A 123 LEU ASN VAL THR PRO GLU ASP PRO ASP GLY ARG PRO ALA SEQRES 6 A 123 GLY SER MET PRO ASP LEU GLY ALA ALA ALA ALA PRO ALA SEQRES 7 A 123 GLU PRO ALA GLU PRO VAL GLU LYS LYS ALA GLU ALA ALA SEQRES 8 A 123 PRO ALA GLU ALA PRO ALA PRO ALA ALA ALA PRO GLU VAL SEQRES 9 A 123 VAL VAL LYS ALA ALA ALA MET ALA PRO GLU ALA PRO ALA SEQRES 10 A 123 PRO ALA GLY ALA ALA THR

HELIX 1 1 ASP A 176 TYR A 180 5 5 HELIX 2 2 CYS A 192 THR A 208 1 17 HELIX 3 3 VAL A 236 ALA A 240 5 5

CISPEP 1 ALA A 264 PRO A 265 0 0.68

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000