10 20 30 40 50 60 70 80 1WPQ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 10-SEP-04 1WPQ
TITLE TERNARY COMPLEX OF GLYCEROL 3-PHOSPHATE DEHYDROGENASE 1 TITLE 2 WITH NAD AND DIHYDROXYACTONE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCEROL-3-PHOSPHATE DEHYDROGENASE [NAD+], COMPND 3 CYTOPLASMIC; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: GPD-C, GPDH-C; COMPND 6 EC: 1.1.1.8; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS NAD, GPD1, DEHYDROGENASE, DIHYDROXYACTONE COMPLEX, KEYWDS 2 OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR X.OU,X.HAN,Z.RAO
REVDAT 2 24-FEB-09 1WPQ 1 VERSN REVDAT 1 11-APR-06 1WPQ 0
JRNL AUTH X.OU,C.JI,X.HAN,X.ZHAO,X.LI,Y.MAO,L.L.WONG, JRNL AUTH 2 M.BARTLAM,Z.RAO JRNL TITL CRYSTAL STRUCTURES OF HUMAN GLYCEROL 3-PHOSPHATE JRNL TITL 2 DEHYDROGENASE 1 (GPD1) JRNL REF J.MOL.BIOL. V. 357 858 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16460752 JRNL DOI 10.1016/J.JMB.2005.12.074
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 34850 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1745 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5248 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 143 REMARK 3 SOLVENT ATOMS : 602 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.31 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1WPQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-SEP-04. REMARK 100 THE RCSB ID CODE IS RCSB023858.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRROR REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73285 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 500.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRI-SODIUM CITRATE DEHYDRATE, REMARK 280 AMMONIUM SULFATE, LITHIUM SULFATE MONOHYDRATE, PH 5.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.86000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 57.99750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 57.99750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 115.29000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 57.99750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 57.99750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.43000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 57.99750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.99750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 115.29000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 57.99750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.99750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.43000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 76.86000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 113 CG CD REMARK 470 PRO B 113 CG CD
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 99 O HOH B 3050 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 11 32.36 -152.77 REMARK 500 GLU A 84 -58.29 -29.84 REMARK 500 PRO A 126 -75.97 -36.85 REMARK 500 ASN A 293 58.44 29.58 REMARK 500 SER B 11 26.26 -154.45 REMARK 500 GLU B 59 144.43 -170.79 REMARK 500 GLU B 84 -66.79 -22.65 REMARK 500 GLN B 96 2.11 -67.48 REMARK 500 ASP B 103 -80.10 -51.33 REMARK 500 ALA B 111 -72.09 -48.97 REMARK 500 ASN B 112 38.70 -96.61 REMARK 500 PRO B 126 -15.45 -46.66 REMARK 500 ALA B 150 86.72 -68.45 REMARK 500 PRO B 246 129.21 -34.79 REMARK 500 ASN B 293 51.25 34.81 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1001 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1002 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1003 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1004 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1005 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1006 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1007 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 13P B 2001 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 13P A 2002 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 3001 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 3002
DBREF 1WPQ A 1 349 UNP P21695 GPDA_HUMAN 1 348 DBREF 1WPQ B 1 349 UNP P21695 GPDA_HUMAN 1 348
SEQRES 1 A 349 MET ALA SER LYS LYS VAL CYS ILE VAL GLY SER GLY ASN SEQRES 2 A 349 TRP GLY SER ALA ILE ALA LYS ILE VAL GLY GLY ASN ALA SEQRES 3 A 349 ALA GLN LEU ALA GLN PHE ASP PRO ARG VAL THR MET TRP SEQRES 4 A 349 VAL PHE GLU GLU ASP ILE GLY GLY LYS LYS LEU THR GLU SEQRES 5 A 349 ILE ILE ASN THR GLN HIS GLU ASN VAL LYS TYR LEU PRO SEQRES 6 A 349 GLY HIS LYS LEU PRO PRO ASN VAL VAL ALA VAL PRO ASP SEQRES 7 A 349 VAL VAL GLN ALA ALA GLU ASP ALA ASP ILE LEU ILE PHE SEQRES 8 A 349 VAL VAL PRO HIS GLN PHE ILE GLY LYS ILE CYS ASP GLN SEQRES 9 A 349 LEU LYS GLY HIS LEU LYS ALA ASN PRO THR GLY ILE SER SEQRES 10 A 349 LEU ILE LYS GLY VAL ASP GLU GLY PRO ASN GLY LEU LYS SEQRES 11 A 349 LEU ILE SER GLU VAL ILE GLY GLU ARG LEU GLY ILE PRO SEQRES 12 A 349 MET SER VAL LEU MET GLY ALA ASN ILE ALA SER GLU VAL SEQRES 13 A 349 ALA ASP GLU LYS PHE CYS GLU THR THR ILE GLY CYS LYS SEQRES 14 A 349 ASP PRO ALA GLN GLY GLN LEU LEU LYS GLU LEU MET GLN SEQRES 15 A 349 THR PRO ASN PHE ARG ILE THR VAL VAL GLN GLU VAL ASP SEQRES 16 A 349 THR VAL GLU ILE CYS GLY ALA LEU LYS ASN VAL VAL ALA SEQRES 17 A 349 VAL GLY ALA GLY PHE CYS ASP GLY LEU GLY PHE GLY ASP SEQRES 18 A 349 ASN THR LYS ALA ALA VAL ILE ARG LEU GLY LEU MET GLU SEQRES 19 A 349 MET ILE ALA PHE ALA LYS LEU PHE CYS SER GLY PRO VAL SEQRES 20 A 349 SER SER ALA THR PHE LEU GLU SER CYS GLY VAL ALA ASP SEQRES 21 A 349 LEU ILE THR THR CYS TYR GLY GLY ARG ASN ARG LYS VAL SEQRES 22 A 349 ALA GLU ALA PHE ALA ARG THR GLY LYS SER ILE GLU GLN SEQRES 23 A 349 LEU GLU LYS GLU LEU LEU ASN GLY GLN LYS LEU GLN GLY SEQRES 24 A 349 PRO GLU THR ALA ARG GLU LEU TYR SER ILE LEU GLN HIS SEQRES 25 A 349 LYS GLY LEU VAL ASP LYS PHE PRO LEU PHE MET ALA VAL SEQRES 26 A 349 TYR LYS VAL CYS TYR GLU GLY GLN PRO VAL GLY GLU PHE SEQRES 27 A 349 ILE HIS CYS LEU GLN ASN HIS PRO GLU HIS MET SEQRES 1 B 349 MET ALA SER LYS LYS VAL CYS ILE VAL GLY SER GLY ASN SEQRES 2 B 349 TRP GLY SER ALA ILE ALA LYS ILE VAL GLY GLY ASN ALA SEQRES 3 B 349 ALA GLN LEU ALA GLN PHE ASP PRO ARG VAL THR MET TRP SEQRES 4 B 349 VAL PHE GLU GLU ASP ILE GLY GLY LYS LYS LEU THR GLU SEQRES 5 B 349 ILE ILE ASN THR GLN HIS GLU ASN VAL LYS TYR LEU PRO SEQRES 6 B 349 GLY HIS LYS LEU PRO PRO ASN VAL VAL ALA VAL PRO ASP SEQRES 7 B 349 VAL VAL GLN ALA ALA GLU ASP ALA ASP ILE LEU ILE PHE SEQRES 8 B 349 VAL VAL PRO HIS GLN PHE ILE GLY LYS ILE CYS ASP GLN SEQRES 9 B 349 LEU LYS GLY HIS LEU LYS ALA ASN PRO THR GLY ILE SER SEQRES 10 B 349 LEU ILE LYS GLY VAL ASP GLU GLY PRO ASN GLY LEU LYS SEQRES 11 B 349 LEU ILE SER GLU VAL ILE GLY GLU ARG LEU GLY ILE PRO SEQRES 12 B 349 MET SER VAL LEU MET GLY ALA ASN ILE ALA SER GLU VAL SEQRES 13 B 349 ALA ASP GLU LYS PHE CYS GLU THR THR ILE GLY CYS LYS SEQRES 14 B 349 ASP PRO ALA GLN GLY GLN LEU LEU LYS GLU LEU MET GLN SEQRES 15 B 349 THR PRO ASN PHE ARG ILE THR VAL VAL GLN GLU VAL ASP SEQRES 16 B 349 THR VAL GLU ILE CYS GLY ALA LEU LYS ASN VAL VAL ALA SEQRES 17 B 349 VAL GLY ALA GLY PHE CYS ASP GLY LEU GLY PHE GLY ASP SEQRES 18 B 349 ASN THR LYS ALA ALA VAL ILE ARG LEU GLY LEU MET GLU SEQRES 19 B 349 MET ILE ALA PHE ALA LYS LEU PHE CYS SER GLY PRO VAL SEQRES 20 B 349 SER SER ALA THR PHE LEU GLU SER CYS GLY VAL ALA ASP SEQRES 21 B 349 LEU ILE THR THR CYS TYR GLY GLY ARG ASN ARG LYS VAL SEQRES 22 B 349 ALA GLU ALA PHE ALA ARG THR GLY LYS SER ILE GLU GLN SEQRES 23 B 349 LEU GLU LYS GLU LEU LEU ASN GLY GLN LYS LEU GLN GLY SEQRES 24 B 349 PRO GLU THR ALA ARG GLU LEU TYR SER ILE LEU GLN HIS SEQRES 25 B 349 LYS GLY LEU VAL ASP LYS PHE PRO LEU PHE MET ALA VAL SEQRES 26 B 349 TYR LYS VAL CYS TYR GLU GLY GLN PRO VAL GLY GLU PHE SEQRES 27 B 349 ILE HIS CYS LEU GLN ASN HIS PRO GLU HIS MET
HET SO4 A1001 5 HET SO4 A1002 5 HET SO4 A1003 5 HET SO4 A1004 5 HET SO4 B1005 5 HET SO4 A1006 5 HET SO4 A1007 5 HET 13P B2001 10 HET 13P A2002 10 HET NAD A3001 44 HET NAD B3002 44
HETNAM SO4 SULFATE ION HETNAM 13P 1,3-DIHYDROXYACETONEPHOSPHATE HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE
FORMUL 3 SO4 7(O4 S 2-) FORMUL 10 13P 2(C3 H7 O6 P) FORMUL 12 NAD 2(C21 H27 N7 O14 P2) FORMUL 14 HOH *602(H2 O)
HELIX 1 1 GLY A 12 LEU A 29 1 18 HELIX 2 2 LEU A 50 HIS A 58 1 9 HELIX 3 3 ASP A 78 GLU A 84 1 7 HELIX 4 4 PRO A 94 GLN A 96 5 3 HELIX 5 5 PHE A 97 LYS A 106 1 10 HELIX 6 6 ILE A 132 GLY A 141 1 10 HELIX 7 7 ILE A 152 ASP A 158 1 7 HELIX 8 8 ASP A 170 GLN A 182 1 13 HELIX 9 9 GLU A 193 LEU A 217 1 25 HELIX 10 10 GLY A 220 CYS A 243 1 24 HELIX 11 11 SER A 249 GLU A 254 5 6 HELIX 12 12 GLY A 257 GLY A 268 1 12 HELIX 13 13 GLY A 268 GLY A 281 1 14 HELIX 14 14 SER A 283 LEU A 292 1 10 HELIX 15 15 GLN A 298 GLY A 314 1 17 HELIX 16 16 LEU A 315 LYS A 318 5 4 HELIX 17 17 PHE A 319 GLU A 331 1 13 HELIX 18 18 PRO A 334 GLU A 337 5 4 HELIX 19 19 PHE A 338 ASN A 344 1 7 HELIX 20 20 GLY B 12 LEU B 29 1 18 HELIX 21 21 LEU B 50 HIS B 58 1 9 HELIX 22 22 ASP B 78 GLU B 84 1 7 HELIX 23 23 PRO B 94 LYS B 106 1 13 HELIX 24 24 LEU B 131 LEU B 140 1 10 HELIX 25 25 ILE B 152 ASP B 158 1 7 HELIX 26 26 ASP B 170 GLN B 182 1 13 HELIX 27 27 GLU B 193 LEU B 217 1 25 HELIX 28 28 GLY B 220 CYS B 243 1 24 HELIX 29 29 SER B 248 GLU B 254 5 7 HELIX 30 30 GLY B 257 GLY B 268 1 12 HELIX 31 31 GLY B 268 GLY B 281 1 14 HELIX 32 32 SER B 283 LEU B 292 1 10 HELIX 33 33 GLN B 298 HIS B 312 1 15 HELIX 34 34 LYS B 313 GLY B 314 5 2 HELIX 35 35 LEU B 315 LYS B 318 5 4 HELIX 36 36 PHE B 319 GLU B 331 1 13 HELIX 37 37 PRO B 334 GLY B 336 5 3 HELIX 38 38 GLU B 337 ASN B 344 1 8
SHEET 1 A 8 VAL A 73 VAL A 76 0 SHEET 2 A 8 PHE A 32 TRP A 39 1 N MET A 38 O VAL A 76 SHEET 3 A 8 LYS A 4 VAL A 9 1 N ILE A 8 O THR A 37 SHEET 4 A 8 ILE A 88 PHE A 91 1 O ILE A 90 N VAL A 9 SHEET 5 A 8 THR A 114 SER A 117 1 O ILE A 116 N PHE A 91 SHEET 6 A 8 MET A 144 MET A 148 1 O SER A 145 N SER A 117 SHEET 7 A 8 CYS A 162 GLY A 167 -1 O THR A 165 N MET A 148 SHEET 8 A 8 PHE A 186 VAL A 191 1 O THR A 189 N ILE A 166 SHEET 1 B 2 ASP A 44 ILE A 45 0 SHEET 2 B 2 LYS A 48 LYS A 49 -1 O LYS A 48 N ILE A 45 SHEET 1 C 2 VAL A 122 GLY A 125 0 SHEET 2 C 2 GLY A 128 LEU A 131 -1 O GLY A 128 N GLY A 125 SHEET 1 D 8 VAL B 73 VAL B 76 0 SHEET 2 D 8 PHE B 32 TRP B 39 1 N VAL B 36 O VAL B 74 SHEET 3 D 8 LYS B 4 VAL B 9 1 N LYS B 4 O ASP B 33 SHEET 4 D 8 ILE B 88 PHE B 91 1 O ILE B 90 N VAL B 9 SHEET 5 D 8 THR B 114 SER B 117 1 O ILE B 116 N PHE B 91 SHEET 6 D 8 MET B 144 MET B 148 1 O SER B 145 N SER B 117 SHEET 7 D 8 CYS B 162 GLY B 167 -1 O THR B 165 N MET B 148 SHEET 8 D 8 PHE B 186 VAL B 191 1 O VAL B 191 N ILE B 166 SHEET 1 E 2 ASP B 44 ILE B 45 0 SHEET 2 E 2 LYS B 48 LYS B 49 -1 O LYS B 48 N ILE B 45 SHEET 1 F 2 ASP B 123 GLY B 125 0 SHEET 2 F 2 GLY B 128 LYS B 130 -1 O LYS B 130 N ASP B 123
SITE 1 AC1 9 LYS A 20 GLY A 66 HIS A 67 LYS A 68 SITE 2 AC1 9 HOH A3042 HOH A3047 HOH A3135 HOH A3175 SITE 3 AC1 9 HOH A3245 SITE 1 AC2 6 HOH A3132 HOH A3195 HOH A3293 LYS B 20 SITE 2 AC2 6 HIS B 67 LYS B 68 SITE 1 AC3 3 ARG A 271 LYS A 272 HOH A3214 SITE 1 AC4 5 LYS A 178 GLN A 182 ARG A 187 HOH A3102 SITE 2 AC4 5 HOH A3256 SITE 1 AC5 5 LYS B 240 VAL B 247 SER B 248 SER B 249 SITE 2 AC5 5 HOH B3102 SITE 1 AC6 5 VAL A 247 SER A 248 HOH A3003 HOH A3033 SITE 2 AC6 5 HOH A3288 SITE 1 AC7 5 PRO A 346 GLU A 347 HIS A 348 HOH A3101 SITE 2 AC7 5 HOH A3149 SITE 1 AC8 12 LYS B 120 LYS B 204 ASN B 205 THR B 264 SITE 2 AC8 12 GLY B 268 ARG B 269 ASN B 270 NAD B3002 SITE 3 AC8 12 HOH B3012 HOH B3013 HOH B3161 HOH B3191 SITE 1 AC9 15 LYS A 120 GLY A 149 LYS A 204 ASN A 205 SITE 2 AC9 15 ASP A 260 THR A 264 GLY A 268 ARG A 269 SITE 3 AC9 15 ASN A 270 NAD A3001 HOH A3005 HOH A3037 SITE 4 AC9 15 HOH A3058 HOH A3136 HOH A3197 SITE 1 BC1 27 SER A 11 GLY A 12 ASN A 13 TRP A 14 SITE 2 BC1 27 GLY A 15 PHE A 41 TYR A 63 VAL A 92 SITE 3 BC1 27 PRO A 94 PHE A 97 LEU A 118 LYS A 120 SITE 4 BC1 27 ASN A 151 ILE A 152 ALA A 153 ARG A 269 SITE 5 BC1 27 GLY A 294 GLN A 295 LYS A 296 GLN A 298 SITE 6 BC1 27 13P A2002 HOH A3026 HOH A3038 HOH A3054 SITE 7 BC1 27 HOH A3056 HOH A3058 HOH A3197 SITE 1 BC2 28 SER B 11 GLY B 12 ASN B 13 TRP B 14 SITE 2 BC2 28 GLY B 15 PHE B 41 TYR B 63 VAL B 93 SITE 3 BC2 28 PRO B 94 PHE B 97 LEU B 118 ILE B 119 SITE 4 BC2 28 LYS B 120 ASN B 151 ILE B 152 ALA B 153 SITE 5 BC2 28 ARG B 269 GLY B 294 GLN B 295 LYS B 296 SITE 6 BC2 28 GLN B 298 13P B2001 HOH B3011 HOH B3013 SITE 7 BC2 28 HOH B3020 HOH B3023 HOH B3037 HOH B3120
CRYST1 115.995 115.995 153.720 90.00 90.00 90.00 P 43 21 2 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008621 0.000000 0.000000 0.00000
SCALE2 0.000000 0.008621 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006505 0.00000