10 20 30 40 50 60 70 80 1WM0 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION/SIGNALING PROTEIN 01-JUL-04 1WM0
TITLE PPARGAMMA IN COMPLEX WITH A 2-BABA COMPOUND
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: RESIDUES 186-477; COMPND 5 SYNONYM: PPAR-GAMMA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 14-MER FROM NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 9 CHAIN: Y; COMPND 10 SYNONYM: NCOA-2, TRANSCRIPTIONAL INTERMEDIARY FACTOR 2, COMPND 11 GLUCOCORTICOID RECEPTOR-INTERACTING PROTEIN 1, GRIP-1; COMPND 12 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SOURCE 13 SEQUENCE OF THE PEPTIDE IS NATURALLY FOUND IN MUS MUSCULUS SOURCE 14 (MOUSE)
KEYWDS THREE-LAYER HELICAL DOMAIN, TRANSCRIPTION/SIGNALING PROTEIN KEYWDS 2 COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR T.OSTBERG,S.SVENSSON,G.SELEN,J.UPPENBERG,M.THOR,M.SUNDBOM, AUTHOR 2 M.SYDOW-BACKMAN,A.L.GUSTAVSSON,L.JENDEBERG
REVDAT 3 24-FEB-09 1WM0 1 VERSN REVDAT 2 24-JAN-06 1WM0 1 JRNL REVDAT 1 07-SEP-04 1WM0 0
JRNL AUTH T.OSTBERG,S.SVENSSON,G.SELEN,J.UPPENBERG,M.THOR, JRNL AUTH 2 M.SUNDBOM,M.SYDOW-BACKMAN,A.L.GUSTAVSSON, JRNL AUTH 3 L.JENDEBERG JRNL TITL A NEW CLASS OF PEROXISOME PROLIFERATOR-ACTIVATED JRNL TITL 2 RECEPTOR AGONISTS WITH A NOVEL BINDING EPITOPE JRNL TITL 3 SHOWS ANTIDIABETIC EFFECTS JRNL REF J.BIOL.CHEM. V. 279 41124 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15258145 JRNL DOI 10.1074/JBC.M401552200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.200 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.7 REMARK 3 NUMBER OF REFLECTIONS : 8525 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 441 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 623 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.4390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2270 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.457 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.271 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.536 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.877 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2338 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3146 ; 2.282 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 279 ; 8.334 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 361 ; 0.158 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1706 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1044 ; 0.272 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 63 ; 0.197 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.224 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.376 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1407 ; 1.224 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2275 ; 2.413 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 931 ; 3.608 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 871 ; 6.276 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1WM0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-AUG-04. REMARK 100 THE RCSB ID CODE IS RCSB023726.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8525 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 14.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3000, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.58300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.33550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.16200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.33550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.58300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.16200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: PPAR/RXR
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY X 186 REMARK 465 SER X 187 REMARK 465 SER X 188 REMARK 465 HIS X 189 REMARK 465 HIS X 190 REMARK 465 HIS X 191 REMARK 465 HIS X 192 REMARK 465 HIS X 193 REMARK 465 HIS X 194 REMARK 465 SER X 195 REMARK 465 GLY X 196 REMARK 465 SER X 197 REMARK 465 GLY X 198 REMARK 465 THR X 199 REMARK 465 THR X 268 REMARK 465 PRO X 269 REMARK 465 LEU X 270 REMARK 465 GLN X 271 REMARK 465 GLU X 272 REMARK 465 GLN X 273 REMARK 465 LYS Y 601 REMARK 465 GLU Y 602 REMARK 465 ASP Y 613 REMARK 465 SER Y 614
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS Y 603 CG CD CE NZ
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU X 259 NH1 ARG X 280 2.05 REMARK 500 NH2 ARG X 212 OE1 GLN X 420 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LEU X 400 NH1 ARG Y 609 4455 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE X 347 CE1 PHE X 347 CZ 0.119 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG X 212 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG X 212 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP X 310 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 VAL X 339 CB - CA - C ANGL. DEV. = -12.6 DEGREES REMARK 500 ASP X 362 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP X 396 CB - CA - C ANGL. DEV. = -13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU X 204 94.33 -68.02 REMARK 500 ASN X 205 128.14 -26.25 REMARK 500 ASP X 243 -73.81 -9.73 REMARK 500 GLU X 259 7.14 -58.12 REMARK 500 HIS X 266 -168.09 -101.51 REMARK 500 LYS X 301 -4.68 -57.42 REMARK 500 LYS X 358 -56.93 -23.42 REMARK 500 GLU X 378 54.17 38.15 REMARK 500 LEU X 453 -28.13 -35.50 REMARK 500 VAL X 455 -79.75 -35.15 REMARK 500 LYS X 458 41.17 -105.33 REMARK 500 THR X 459 -16.27 -144.94 REMARK 500 MET X 463 -79.29 -74.97 REMARK 500 SER X 464 110.96 60.12 REMARK 500 LYS X 474 -119.65 -20.07 REMARK 500 LEU Y 611 38.73 -80.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE X 200 GLU X 201 -138.38 REMARK 500 LYS X 244 SER X 245 148.48 REMARK 500 LYS X 265 HIS X 266 149.83 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLB X 1
DBREF 1WM0 X 204 477 UNP Q96J12 PPAT_HUMAN 232 505 DBREF 1WM0 Y 601 614 UNP Q61026 NCOA2_MOUSE 684 697
SEQADV 1WM0 GLY X 186 UNP Q96J12 EXPRESSION TAG SEQADV 1WM0 SER X 187 UNP Q96J12 EXPRESSION TAG SEQADV 1WM0 SER X 188 UNP Q96J12 EXPRESSION TAG SEQADV 1WM0 HIS X 189 UNP Q96J12 EXPRESSION TAG SEQADV 1WM0 HIS X 190 UNP Q96J12 EXPRESSION TAG SEQADV 1WM0 HIS X 191 UNP Q96J12 EXPRESSION TAG SEQADV 1WM0 HIS X 192 UNP Q96J12 EXPRESSION TAG SEQADV 1WM0 HIS X 193 UNP Q96J12 EXPRESSION TAG SEQADV 1WM0 HIS X 194 UNP Q96J12 EXPRESSION TAG SEQADV 1WM0 SER X 195 UNP Q96J12 EXPRESSION TAG SEQADV 1WM0 GLY X 196 UNP Q96J12 EXPRESSION TAG SEQADV 1WM0 SER X 197 UNP Q96J12 EXPRESSION TAG SEQADV 1WM0 GLY X 198 UNP Q96J12 EXPRESSION TAG SEQADV 1WM0 THR X 199 UNP Q96J12 EXPRESSION TAG SEQADV 1WM0 ILE X 200 UNP Q96J12 EXPRESSION TAG SEQADV 1WM0 GLU X 201 UNP Q96J12 EXPRESSION TAG SEQADV 1WM0 GLY X 202 UNP Q96J12 EXPRESSION TAG SEQADV 1WM0 ARG X 203 UNP Q96J12 EXPRESSION TAG
SEQRES 1 X 292 GLY SER SER HIS HIS HIS HIS HIS HIS SER GLY SER GLY SEQRES 2 X 292 THR ILE GLU GLY ARG LEU ASN PRO GLU SER ALA ASP LEU SEQRES 3 X 292 ARG ALA LEU ALA LYS HIS LEU TYR ASP SER TYR ILE LYS SEQRES 4 X 292 SER PHE PRO LEU THR LYS ALA LYS ALA ARG ALA ILE LEU SEQRES 5 X 292 THR GLY LYS THR THR ASP LYS SER PRO PHE VAL ILE TYR SEQRES 6 X 292 ASP MET ASN SER LEU MET MET GLY GLU ASP LYS ILE LYS SEQRES 7 X 292 PHE LYS HIS ILE THR PRO LEU GLN GLU GLN SER LYS GLU SEQRES 8 X 292 VAL ALA ILE ARG ILE PHE GLN GLY CYS GLN PHE ARG SER SEQRES 9 X 292 VAL GLU ALA VAL GLN GLU ILE THR GLU TYR ALA LYS SER SEQRES 10 X 292 ILE PRO GLY PHE VAL ASN LEU ASP LEU ASN ASP GLN VAL SEQRES 11 X 292 THR LEU LEU LYS TYR GLY VAL HIS GLU ILE ILE TYR THR SEQRES 12 X 292 MET LEU ALA SER LEU MET ASN LYS ASP GLY VAL LEU ILE SEQRES 13 X 292 SER GLU GLY GLN GLY PHE MET THR ARG GLU PHE LEU LYS SEQRES 14 X 292 SER LEU ARG LYS PRO PHE GLY ASP PHE MET GLU PRO LYS SEQRES 15 X 292 PHE GLU PHE ALA VAL LYS PHE ASN ALA LEU GLU LEU ASP SEQRES 16 X 292 ASP SER ASP LEU ALA ILE PHE ILE ALA VAL ILE ILE LEU SEQRES 17 X 292 SER GLY ASP ARG PRO GLY LEU LEU ASN VAL LYS PRO ILE SEQRES 18 X 292 GLU ASP ILE GLN ASP ASN LEU LEU GLN ALA LEU GLU LEU SEQRES 19 X 292 GLN LEU LYS LEU ASN HIS PRO GLU SER SER GLN LEU PHE SEQRES 20 X 292 ALA LYS LEU LEU GLN LYS MET THR ASP LEU ARG GLN ILE SEQRES 21 X 292 VAL THR GLU HIS VAL GLN LEU LEU GLN VAL ILE LYS LYS SEQRES 22 X 292 THR GLU THR ASP MET SER LEU HIS PRO LEU LEU GLN GLU SEQRES 23 X 292 ILE TYR LYS ASP LEU TYR SEQRES 1 Y 14 LYS GLU LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SEQRES 2 Y 14 SER
HET PLB X 1 27
HETNAM PLB 2-[(2,4-DICHLOROBENZOYL)AMINO]-5-(PYRIMIDIN-2-YLOXY) HETNAM 2 PLB BENZOIC ACID
HETSYN PLB 5-(2-PYRIMIDINYLOXY)-2-BENZOYLAMINOBENZOIC ACID
FORMUL 3 PLB C18 H11 CL2 N3 O4
HELIX 1 1 GLU X 207 PHE X 226 1 20 HELIX 2 2 THR X 229 LEU X 237 1 9 HELIX 3 3 ASP X 251 GLU X 259 1 9 HELIX 4 4 GLU X 276 LYS X 301 1 26 HELIX 5 5 GLY X 305 LEU X 309 5 5 HELIX 6 6 ASP X 310 LEU X 333 1 24 HELIX 7 7 ARG X 350 LYS X 354 1 5 HELIX 8 8 PRO X 359 PHE X 363 5 5 HELIX 9 9 MET X 364 ALA X 376 1 13 HELIX 10 10 ASP X 380 LEU X 393 1 14 HELIX 11 11 VAL X 403 HIS X 425 1 23 HELIX 12 12 GLN X 430 LYS X 458 1 29 HELIX 13 13 HIS X 466 LYS X 474 1 9 HELIX 14 14 HIS Y 604 LEU Y 611 1 8
SHEET 1 A 4 PHE X 247 ILE X 249 0 SHEET 2 A 4 GLY X 346 THR X 349 1 O PHE X 347 N PHE X 247 SHEET 3 A 4 GLY X 338 ILE X 341 -1 N VAL X 339 O MET X 348 SHEET 4 A 4 MET X 334 ASN X 335 -1 N ASN X 335 O GLY X 338
SITE 1 AC1 12 LEU X 255 GLU X 259 HIS X 266 ILE X 281 SITE 2 AC1 12 GLY X 284 CYS X 285 ARG X 288 MET X 329 SITE 3 AC1 12 LEU X 340 ILE X 341 SER X 342 MET X 348
CRYST1 49.166 66.324 122.671 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.020339 0.000000 0.000000 0.00000
SCALE2 0.000000 0.015077 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008152 0.00000