10 20 30 40 50 60 70 80 1WIZ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA BINDING PROTEIN 28-MAY-04 1WIZ
TITLE SOLUTION STRUCTURE OF THE FIRST CUT DOMAIN OF KIAA1034 TITLE 2 PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-BINDING PROTEIN SATB2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CUT DOMAIN; COMPND 5 SYNONYM: KIAA1034 PROTEIN, SATB2 PROTEIN, SPECIAL AT-RICH COMPND 6 SEQUENCE-BINDING PROTEIN 2; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAZUSA CDNA FH00753; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040114-63; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS HELIX BUNDLE, SATB2, KIAA1034 PROTEIN, STRUCTURAL GENOMICS, KEYWDS 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, DNA KEYWDS 3 BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR K.INOUE,S.NAMEKI,F.HAYASHI,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 1WIZ 1 VERSN REVDAT 1 28-NOV-04 1WIZ 0
JRNL AUTH K.INOUE,S.NAMEKI,F.HAYASHI,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIRST CUT DOMAIN OF JRNL TITL 2 KIAA1034 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.7 REMARK 3 AUTHORS : GUENTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1WIZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUN-04. REMARK 100 THE RCSB ID CODE IS RCSB023629.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.20MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL; REMARK 210 100MM NACL; 2MM D-DTT; 0.02% REMARK 210 NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20020425, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.8992, REMARK 210 CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 168.68 67.82 REMARK 500 1 SER A 3 145.00 69.14 REMARK 500 1 SER A 5 130.57 -172.77 REMARK 500 1 LYS A 8 95.79 61.91 REMARK 500 1 PRO A 9 -169.01 -75.06 REMARK 500 1 THR A 12 99.83 -164.39 REMARK 500 1 SER A 15 79.57 39.71 REMARK 500 1 GLN A 37 -30.69 -39.84 REMARK 500 1 PHE A 45 24.57 -148.68 REMARK 500 1 THR A 48 -157.91 -107.04 REMARK 500 1 GLU A 60 104.57 -46.80 REMARK 500 1 LEU A 82 163.90 -47.68 REMARK 500 1 SER A 96 77.95 53.96 REMARK 500 1 SER A 99 74.31 43.43 REMARK 500 1 SER A 100 145.84 -39.84 REMARK 500 2 SER A 2 144.94 68.19 REMARK 500 2 SER A 3 134.51 -171.19 REMARK 500 2 PRO A 9 -167.58 -75.05 REMARK 500 2 GLU A 10 91.85 179.73 REMARK 500 2 SER A 15 90.67 41.89 REMARK 500 2 PHE A 45 24.98 -148.40 REMARK 500 2 THR A 48 -157.93 -101.13 REMARK 500 2 GLU A 60 104.87 -47.05 REMARK 500 2 ALA A 65 153.94 -40.22 REMARK 500 2 LEU A 82 164.71 -45.66 REMARK 500 2 SER A 96 111.40 60.05 REMARK 500 3 SER A 3 167.74 175.84 REMARK 500 3 SER A 5 145.91 -170.13 REMARK 500 3 SER A 6 160.00 176.06 REMARK 500 3 LYS A 8 113.47 -172.85 REMARK 500 3 PRO A 11 -165.49 -74.97 REMARK 500 3 ASN A 13 152.09 175.03 REMARK 500 3 SER A 14 75.37 166.87 REMARK 500 3 SER A 15 77.17 39.85 REMARK 500 3 PHE A 45 26.57 -149.73 REMARK 500 3 THR A 48 -145.23 -107.99 REMARK 500 3 GLU A 60 104.90 -46.73 REMARK 500 3 LEU A 82 162.53 -48.65 REMARK 500 4 SER A 2 -60.93 -172.51 REMARK 500 4 SER A 3 166.07 179.41 REMARK 500 4 SER A 5 86.25 61.81 REMARK 500 4 SER A 6 127.41 179.29 REMARK 500 4 SER A 14 -166.85 -108.67 REMARK 500 4 VAL A 16 138.58 62.28 REMARK 500 4 ALA A 41 -33.63 -39.32 REMARK 500 4 PHE A 45 25.23 -149.55 REMARK 500 4 THR A 48 -166.28 -101.15 REMARK 500 4 GLU A 60 104.89 -46.85 REMARK 500 4 ALA A 65 140.08 -39.65 REMARK 500 4 SER A 96 97.23 -54.67 REMARK 500 4 SER A 99 148.62 -179.22 REMARK 500 5 SER A 3 169.78 177.72 REMARK 500 5 SER A 5 143.58 66.48 REMARK 500 5 SER A 6 158.09 179.01 REMARK 500 5 SER A 14 90.63 177.04 REMARK 500 5 SER A 15 77.76 41.29 REMARK 500 5 GLN A 37 -38.85 -38.96 REMARK 500 5 PHE A 45 27.67 -149.18 REMARK 500 5 GLU A 60 104.79 -46.82 REMARK 500 5 ALA A 65 154.01 -39.42 REMARK 500 5 LEU A 82 163.45 -49.47 REMARK 500 5 SER A 96 146.56 60.89 REMARK 500 5 SER A 100 -58.40 -173.22 REMARK 500 6 SER A 2 100.15 69.57 REMARK 500 6 SER A 3 149.13 171.83 REMARK 500 6 SER A 5 107.71 62.32 REMARK 500 6 SER A 6 148.64 169.06 REMARK 500 6 THR A 12 69.93 -170.64 REMARK 500 6 SER A 14 -58.54 -175.95 REMARK 500 6 GLN A 37 -34.13 -38.79 REMARK 500 6 PHE A 45 29.23 -151.15 REMARK 500 6 THR A 48 -154.77 -104.29 REMARK 500 6 GLU A 60 104.52 -46.77 REMARK 500 6 ALA A 65 162.80 -43.29 REMARK 500 6 SER A 96 93.59 172.68 REMARK 500 6 SER A 99 161.20 60.06 REMARK 500 7 SER A 5 124.24 -173.90 REMARK 500 7 SER A 6 157.64 177.31 REMARK 500 7 THR A 12 -148.54 -144.69 REMARK 500 7 ASN A 13 -64.84 -129.71 REMARK 500 7 SER A 14 63.66 170.69 REMARK 500 7 SER A 15 70.70 42.49 REMARK 500 7 PHE A 45 25.96 -147.86 REMARK 500 7 GLU A 60 105.15 -46.55 REMARK 500 7 ALA A 65 140.62 -39.93 REMARK 500 7 SER A 96 75.38 62.36 REMARK 500 8 SER A 2 146.84 -176.99 REMARK 500 8 SER A 14 -57.37 -158.55 REMARK 500 8 SER A 15 117.20 175.40 REMARK 500 8 PHE A 45 25.40 -147.96 REMARK 500 8 THR A 48 -155.07 -97.93 REMARK 500 8 GLU A 60 104.53 -46.94 REMARK 500 8 ALA A 65 138.59 -39.17 REMARK 500 8 LEU A 82 163.36 -48.47 REMARK 500 8 SER A 96 83.30 60.98 REMARK 500 8 SER A 99 140.21 -171.63 REMARK 500 9 SER A 2 138.05 -178.44 REMARK 500 9 SER A 5 106.86 70.91 REMARK 500 9 SER A 6 140.42 179.90 REMARK 500 9 PRO A 11 -169.78 -75.01 REMARK 500 9 ASN A 13 160.61 62.53 REMARK 500 9 SER A 14 80.32 177.27 REMARK 500 9 SER A 15 82.90 39.55 REMARK 500 9 GLN A 37 -36.96 -38.47 REMARK 500 9 ALA A 41 -30.12 -39.31 REMARK 500 9 PHE A 45 24.81 -148.41 REMARK 500 9 THR A 48 -151.63 -101.13 REMARK 500 9 GLU A 60 105.03 -46.79 REMARK 500 9 ALA A 65 156.99 -44.51 REMARK 500 9 LEU A 82 164.50 -46.39 REMARK 500 9 SER A 96 82.83 60.13 REMARK 500 9 SER A 99 174.61 57.74 REMARK 500 10 SER A 6 135.22 69.55 REMARK 500 10 PRO A 11 -166.05 -74.98 REMARK 500 10 THR A 12 -61.18 -121.06 REMARK 500 10 ASN A 13 170.61 175.71 REMARK 500 10 PHE A 45 20.59 -146.50 REMARK 500 10 THR A 48 -143.33 -102.96 REMARK 500 10 GLU A 60 104.21 -48.11 REMARK 500 10 SER A 96 128.71 62.40 REMARK 500 11 SER A 2 142.81 177.38 REMARK 500 11 SER A 5 165.00 175.95 REMARK 500 11 GLU A 10 111.97 -161.22 REMARK 500 11 ASN A 13 176.01 167.50 REMARK 500 11 GLN A 37 -36.69 -38.82 REMARK 500 11 PHE A 45 25.53 -149.49 REMARK 500 11 ALA A 65 160.23 -42.62 REMARK 500 11 SER A 96 74.03 57.15 REMARK 500 12 SER A 2 121.42 178.09 REMARK 500 12 SER A 3 143.24 179.07 REMARK 500 12 LYS A 8 116.55 -172.65 REMARK 500 12 ASN A 13 -54.50 -155.50 REMARK 500 12 SER A 14 -66.93 72.46 REMARK 500 12 GLN A 37 -39.39 -39.99 REMARK 500 12 PHE A 45 25.01 -148.32 REMARK 500 12 GLU A 60 104.73 -46.97 REMARK 500 12 ALA A 65 141.91 -37.93 REMARK 500 12 SER A 96 79.87 67.12 REMARK 500 12 SER A 99 112.66 -165.52 REMARK 500 12 SER A 100 117.30 -177.44 REMARK 500 13 SER A 2 114.55 174.84 REMARK 500 13 SER A 3 78.01 -177.98 REMARK 500 13 SER A 5 109.52 -178.88 REMARK 500 13 SER A 6 157.03 172.30 REMARK 500 13 GLU A 10 95.12 -169.81 REMARK 500 13 THR A 12 70.42 -174.84 REMARK 500 13 SER A 14 74.97 175.17 REMARK 500 13 SER A 15 99.72 52.85 REMARK 500 13 GLN A 37 -34.28 -38.85 REMARK 500 13 PHE A 45 21.97 -146.61 REMARK 500 13 LEU A 82 163.40 -46.97 REMARK 500 13 SER A 99 153.65 69.95 REMARK 500 14 SER A 2 84.56 -166.80 REMARK 500 14 SER A 5 113.71 -172.05 REMARK 500 14 SER A 6 128.57 176.73 REMARK 500 14 LYS A 8 93.74 -171.25 REMARK 500 14 THR A 12 -71.75 -113.84 REMARK 500 14 SER A 14 -61.67 -167.76 REMARK 500 14 GLN A 37 -35.83 -39.58 REMARK 500 14 ALA A 41 -32.37 -39.20 REMARK 500 14 PHE A 45 24.30 -149.01 REMARK 500 14 THR A 48 -169.54 -104.27 REMARK 500 14 LEU A 52 -37.19 -39.73 REMARK 500 14 GLU A 60 104.73 -46.83 REMARK 500 14 ALA A 65 172.53 -48.13 REMARK 500 14 SER A 96 81.43 51.63 REMARK 500 14 SER A 100 160.32 -45.51 REMARK 500 15 SER A 3 -65.49 -100.30 REMARK 500 15 SER A 6 130.75 -177.30 REMARK 500 15 PRO A 11 -165.64 -75.03 REMARK 500 15 THR A 12 -65.00 -135.65 REMARK 500 15 ASN A 13 170.86 175.56 REMARK 500 15 SER A 14 113.74 -168.24 REMARK 500 15 SER A 15 147.48 61.90 REMARK 500 15 PHE A 45 30.00 -150.34 REMARK 500 15 GLU A 60 104.58 -46.86 REMARK 500 15 ALA A 65 173.70 -47.85 REMARK 500 15 SER A 96 79.15 59.27 REMARK 500 15 SER A 99 121.54 66.07 REMARK 500 15 SER A 100 -59.09 -157.20 REMARK 500 16 SER A 3 117.77 -177.30 REMARK 500 16 SER A 5 151.82 175.14 REMARK 500 16 SER A 6 130.19 174.65 REMARK 500 16 GLU A 10 146.79 -178.25 REMARK 500 16 SER A 14 -60.87 -158.60 REMARK 500 16 ALA A 41 -31.89 -38.31 REMARK 500 16 PHE A 45 31.41 -152.86 REMARK 500 16 THR A 48 -150.80 -104.02 REMARK 500 16 GLU A 60 104.83 -46.82 REMARK 500 16 LEU A 82 163.70 -47.59 REMARK 500 16 SER A 96 73.48 63.61 REMARK 500 16 SER A 99 154.63 59.07 REMARK 500 17 SER A 2 168.99 179.89 REMARK 500 17 SER A 3 157.02 59.32 REMARK 500 17 SER A 6 152.61 177.47 REMARK 500 17 THR A 12 -70.40 -115.07 REMARK 500 17 ASN A 13 127.27 -175.57 REMARK 500 17 SER A 14 80.18 -177.40 REMARK 500 17 SER A 15 81.06 40.68 REMARK 500 17 PHE A 45 21.68 -145.22 REMARK 500 17 THR A 48 -156.46 -104.07 REMARK 500 17 GLU A 60 104.63 -46.56 REMARK 500 17 ALA A 65 141.15 -39.67 REMARK 500 17 SER A 96 97.65 61.36 REMARK 500 17 SER A 99 127.37 61.66 REMARK 500 17 SER A 100 -61.03 -167.01 REMARK 500 18 SER A 6 131.48 -175.65 REMARK 500 18 PRO A 9 -168.68 -74.99 REMARK 500 18 THR A 12 166.31 55.95 REMARK 500 18 SER A 15 83.48 41.19 REMARK 500 18 GLN A 37 -35.73 -39.58 REMARK 500 18 PHE A 45 18.56 -142.49 REMARK 500 18 ASN A 46 64.94 60.16 REMARK 500 18 THR A 48 -165.40 -100.96 REMARK 500 18 GLU A 60 105.07 -47.67 REMARK 500 18 SER A 96 83.83 59.99 REMARK 500 18 SER A 99 -61.28 -155.99 REMARK 500 18 SER A 100 -57.43 -122.61 REMARK 500 19 SER A 5 84.18 -160.47 REMARK 500 19 SER A 6 92.36 -169.92 REMARK 500 19 GLU A 10 105.72 -177.90 REMARK 500 19 ASN A 13 134.18 65.25 REMARK 500 19 SER A 14 81.56 168.29 REMARK 500 19 PHE A 45 36.65 -149.15 REMARK 500 19 THR A 48 -158.70 -101.05 REMARK 500 19 GLU A 60 104.39 -47.64 REMARK 500 19 SER A 96 138.09 67.17 REMARK 500 20 SER A 2 -82.00 63.78 REMARK 500 20 SER A 6 -51.09 -177.14 REMARK 500 20 THR A 12 139.02 61.36 REMARK 500 20 ASN A 13 164.79 70.03 REMARK 500 20 SER A 14 -56.88 -150.13 REMARK 500 20 VAL A 16 140.47 62.15 REMARK 500 20 PHE A 45 43.72 -150.40 REMARK 500 20 ASN A 46 66.57 35.37 REMARK 500 20 GLU A 60 104.20 -47.38 REMARK 500 20 ALA A 65 147.43 -38.89 REMARK 500 20 SER A 96 102.06 -47.15 REMARK 500 20 SER A 100 -85.89 58.56 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002001010.2 RELATED DB: TARGETDB
DBREF 1WIZ A 8 95 UNP Q9UPW6 SATB2_HUMAN 350 437
SEQADV 1WIZ GLY A 1 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WIZ SER A 2 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WIZ SER A 3 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WIZ GLY A 4 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WIZ SER A 5 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WIZ SER A 6 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WIZ GLY A 7 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WIZ SER A 96 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WIZ GLY A 97 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WIZ PRO A 98 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WIZ SER A 99 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WIZ SER A 100 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WIZ GLY A 101 UNP Q9UPW6 CLONING ARTIFACT
SEQRES 1 A 101 GLY SER SER GLY SER SER GLY LYS PRO GLU PRO THR ASN SEQRES 2 A 101 SER SER VAL GLU VAL SER PRO ASP ILE TYR GLN GLN VAL SEQRES 3 A 101 ARG ASP GLU LEU LYS ARG ALA SER VAL SER GLN ALA VAL SEQRES 4 A 101 PHE ALA ARG VAL ALA PHE ASN ARG THR GLN GLY LEU LEU SEQRES 5 A 101 SER GLU ILE LEU ARG LYS GLU GLU ASP PRO ARG THR ALA SEQRES 6 A 101 SER GLN SER LEU LEU VAL ASN LEU ARG ALA MET GLN ASN SEQRES 7 A 101 PHE LEU ASN LEU PRO GLU VAL GLU ARG ASP ARG ILE TYR SEQRES 8 A 101 GLN ASP GLU ARG SER GLY PRO SER SER GLY
HELIX 1 1 ASP A 21 SER A 34 1 14 HELIX 2 2 SER A 36 ASN A 46 1 11 HELIX 3 3 THR A 48 LYS A 58 1 11 HELIX 4 4 SER A 66 LEU A 80 1 15 HELIX 5 5 PRO A 83 SER A 96 1 14
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000