10 20 30 40 50 60 70 80 1WIH - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-MAY-04 1WIH
TITLE SOLUTION STRUCTURE OF RSGI RUH-021, A DOMAIN II OF RIBOSOME TITLE 2 RECYCLING FACTOR FROM MOUSE CDNA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOCHONDRIAL RIBOSOME RECYCLING FACTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DOMAIN II; COMPND 5 SYNONYM: RIKEN CDNA 2400002D02; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 TISSUE: TONGUE; SOURCE 6 GENE: RIKEN CDNA 2310061P21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P030908-28; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS SYSTEM
KEYWDS RIBOSOME RECYCLING FACTOR, STRUCTURAL GENOMICS, RIKEN KEYWDS 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN KEYWDS 3 FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.ABE,H.HIROTA,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 1WIH 1 VERSN REVDAT 1 28-NOV-04 1WIH 0
JRNL AUTH T.ABE,H.HIROTA,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RSGI RUH-021, A DOMAIN II OF JRNL TITL 2 RIBOSOME RECYCLING FACTOR FROM MOUSE CDNA JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.18 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1WIH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JUN-04. REMARK 100 THE RCSB ID CODE IS RCSB023616.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.50MM RSGI RUH-021 U-15N, REMARK 210 13C; 20MM D-TRIS-HCL BUFFER; REMARK 210 100MM NACL; 2MM D-DTT; 0.02% REMARK 210 NAN3; 10% D20 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.896 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 -57.38 -141.58 REMARK 500 1 LEU A 8 -49.63 -138.37 REMARK 500 1 ALA A 16 -78.00 -39.58 REMARK 500 1 ASN A 23 34.16 -95.25 REMARK 500 1 GLN A 24 -54.73 -131.83 REMARK 500 1 LYS A 31 -71.30 -94.32 REMARK 500 1 GLN A 34 40.37 -159.24 REMARK 500 1 PHE A 43 68.69 -152.00 REMARK 500 1 THR A 68 16.09 -143.59 REMARK 500 1 THR A 78 111.33 61.73 REMARK 500 1 SER A 83 100.80 -178.60 REMARK 500 2 SER A 5 -66.09 -106.03 REMARK 500 2 LEU A 8 -50.34 -125.48 REMARK 500 2 ASP A 17 -36.76 177.60 REMARK 500 2 ASN A 23 33.10 -92.63 REMARK 500 2 GLN A 24 -55.44 -129.37 REMARK 500 3 LEU A 8 -52.63 -124.75 REMARK 500 3 ASP A 17 -33.32 169.70 REMARK 500 3 GLN A 24 -54.28 -120.03 REMARK 500 3 PHE A 43 65.97 -150.81 REMARK 500 3 MET A 59 107.02 -160.70 REMARK 500 3 ASN A 60 69.26 -68.37 REMARK 500 3 LYS A 76 138.70 66.04 REMARK 500 3 VAL A 77 -57.94 -122.30 REMARK 500 3 THR A 78 -70.08 -74.21 REMARK 500 3 SER A 83 133.62 66.11 REMARK 500 4 SER A 6 -56.10 -137.33 REMARK 500 4 LEU A 8 -53.07 -128.79 REMARK 500 4 ILE A 11 150.93 -43.47 REMARK 500 4 GLN A 24 -55.08 -121.58 REMARK 500 4 MET A 40 54.09 -108.79 REMARK 500 4 PHE A 43 65.09 -160.92 REMARK 500 4 ILE A 51 -37.38 -38.67 REMARK 500 4 MET A 59 -48.75 -136.07 REMARK 500 4 SER A 79 97.96 51.57 REMARK 500 4 SER A 83 136.92 63.46 REMARK 500 5 LEU A 8 -49.00 -130.17 REMARK 500 5 GLN A 24 -54.37 -126.56 REMARK 500 5 MET A 30 86.00 -66.85 REMARK 500 5 GLN A 34 29.16 -147.59 REMARK 500 5 PHE A 43 64.68 -158.89 REMARK 500 5 MET A 59 -47.80 -137.06 REMARK 500 5 LYS A 76 78.71 -173.28 REMARK 500 5 THR A 78 89.49 47.21 REMARK 500 5 SER A 83 99.34 58.83 REMARK 500 6 SER A 5 128.09 65.07 REMARK 500 6 GLN A 24 -55.53 -122.58 REMARK 500 6 MET A 30 86.23 -69.13 REMARK 500 6 PHE A 43 63.30 -155.49 REMARK 500 6 VAL A 77 -169.98 45.28 REMARK 500 6 THR A 78 74.74 56.62 REMARK 500 6 SER A 83 -57.85 -151.43 REMARK 500 7 ASP A 17 -33.56 169.52 REMARK 500 7 GLN A 24 -54.40 -121.97 REMARK 500 7 ASN A 60 65.17 -69.28 REMARK 500 7 SER A 82 75.11 55.04 REMARK 500 7 SER A 83 -57.11 -171.27 REMARK 500 8 SER A 2 145.25 -172.82 REMARK 500 8 SER A 5 93.73 44.99 REMARK 500 8 SER A 6 72.17 47.83 REMARK 500 8 LEU A 8 -51.71 -139.41 REMARK 500 8 ASP A 17 -33.78 167.83 REMARK 500 8 GLN A 24 -54.43 -126.56 REMARK 500 8 SER A 57 58.23 -118.39 REMARK 500 8 ASN A 60 45.40 -87.71 REMARK 500 8 VAL A 77 87.43 32.36 REMARK 500 8 THR A 78 151.48 64.76 REMARK 500 8 SER A 79 111.40 73.35 REMARK 500 8 SER A 82 -66.04 -163.96 REMARK 500 9 SER A 2 -58.20 -155.04 REMARK 500 9 ASP A 17 -36.95 178.29 REMARK 500 9 GLN A 34 41.85 -159.57 REMARK 500 9 LYS A 76 163.76 179.45 REMARK 500 9 SER A 79 -178.96 65.91 REMARK 500 10 GLN A 24 -55.58 -123.83 REMARK 500 10 MET A 30 85.22 -67.75 REMARK 500 10 ASN A 60 43.77 76.29 REMARK 500 10 LYS A 76 64.20 70.69 REMARK 500 10 THR A 78 133.84 62.89 REMARK 500 10 SER A 79 -55.04 -134.48 REMARK 500 11 SER A 2 89.75 61.19 REMARK 500 11 SER A 5 175.64 -56.34 REMARK 500 11 SER A 6 94.45 46.16 REMARK 500 11 LEU A 8 -50.82 -123.85 REMARK 500 11 ALA A 16 59.17 -90.30 REMARK 500 11 ASP A 17 -36.74 177.62 REMARK 500 11 GLN A 24 -53.85 -126.83 REMARK 500 11 MET A 30 85.09 -69.18 REMARK 500 11 PHE A 43 66.29 -154.18 REMARK 500 11 LYS A 76 84.04 73.87 REMARK 500 11 SER A 82 131.61 177.78 REMARK 500 12 SER A 2 130.34 66.38 REMARK 500 12 SER A 3 98.06 -162.56 REMARK 500 12 LEU A 8 -50.65 -124.71 REMARK 500 12 ASP A 17 -36.18 176.47 REMARK 500 12 GLN A 24 -54.33 -123.24 REMARK 500 12 ILE A 51 -35.18 -39.89 REMARK 500 12 SER A 82 116.62 -39.43 REMARK 500 13 SER A 6 -66.47 -127.40 REMARK 500 13 ILE A 11 152.19 -49.98 REMARK 500 13 ALA A 16 -75.60 -38.43 REMARK 500 13 GLN A 24 -54.55 -125.35 REMARK 500 13 MET A 30 86.32 -69.57 REMARK 500 13 PHE A 43 66.08 -161.89 REMARK 500 13 SER A 57 -67.81 -95.52 REMARK 500 13 THR A 68 15.38 -141.68 REMARK 500 13 LYS A 76 86.45 42.58 REMARK 500 13 VAL A 77 124.55 63.84 REMARK 500 13 THR A 78 118.04 -39.08 REMARK 500 13 SER A 83 -58.80 -177.48 REMARK 500 14 SER A 6 -59.12 -168.20 REMARK 500 14 LEU A 8 -46.94 -134.23 REMARK 500 14 ILE A 11 152.82 -46.37 REMARK 500 14 ASP A 17 -33.43 170.05 REMARK 500 14 ASN A 23 31.05 -93.46 REMARK 500 14 GLN A 24 -54.80 -128.13 REMARK 500 14 GLN A 34 47.21 -140.09 REMARK 500 14 PHE A 43 69.16 -154.51 REMARK 500 14 SER A 79 152.04 64.81 REMARK 500 15 SER A 6 164.06 -43.27 REMARK 500 15 ILE A 11 165.24 -43.74 REMARK 500 15 ASP A 17 -33.81 165.66 REMARK 500 15 ASN A 23 33.68 -95.31 REMARK 500 15 GLN A 24 -54.84 -130.27 REMARK 500 15 MET A 30 98.17 -60.75 REMARK 500 15 GLN A 34 -43.64 171.75 REMARK 500 15 VAL A 77 62.20 -154.40 REMARK 500 15 SER A 79 164.12 56.47 REMARK 500 15 SER A 82 123.22 64.76 REMARK 500 15 SER A 83 168.73 71.20 REMARK 500 16 SER A 2 94.20 -160.08 REMARK 500 16 LEU A 8 -50.01 -128.37 REMARK 500 16 ALA A 16 -82.56 -38.53 REMARK 500 16 ASN A 23 35.48 -97.30 REMARK 500 16 GLN A 24 -54.20 -132.11 REMARK 500 16 MET A 30 86.98 -67.89 REMARK 500 16 GLN A 34 -38.02 164.42 REMARK 500 16 LEU A 61 -172.37 46.69 REMARK 500 16 VAL A 77 -170.49 45.43 REMARK 500 17 SER A 2 -56.31 -168.06 REMARK 500 17 SER A 3 136.60 62.14 REMARK 500 17 SER A 6 -77.69 -127.64 REMARK 500 17 LEU A 8 -47.94 -140.92 REMARK 500 17 ILE A 11 157.98 -47.68 REMARK 500 17 ASP A 17 -36.14 176.12 REMARK 500 17 ASN A 23 33.73 -95.81 REMARK 500 17 GLN A 24 -55.25 -130.49 REMARK 500 17 MET A 30 93.98 -63.09 REMARK 500 17 LYS A 31 -71.15 -70.54 REMARK 500 17 GLN A 34 28.41 -151.98 REMARK 500 17 ASN A 60 63.09 63.29 REMARK 500 17 THR A 68 14.17 -141.02 REMARK 500 17 PRO A 75 -162.62 -74.99 REMARK 500 17 THR A 78 -62.95 -105.13 REMARK 500 17 SER A 83 105.01 -171.02 REMARK 500 18 SER A 3 99.06 58.68 REMARK 500 18 SER A 5 85.80 69.52 REMARK 500 18 GLN A 24 -55.69 -125.01 REMARK 500 18 LYS A 31 -70.60 -85.40 REMARK 500 18 GLN A 34 43.88 -159.44 REMARK 500 18 PHE A 43 65.95 -156.55 REMARK 500 18 LEU A 61 171.43 -55.27 REMARK 500 18 PRO A 75 -162.69 -75.08 REMARK 500 18 LYS A 76 -176.35 -55.17 REMARK 500 18 SER A 83 86.74 45.84 REMARK 500 19 LEU A 8 -48.15 -130.29 REMARK 500 19 ASP A 17 -33.57 168.32 REMARK 500 19 GLN A 24 -53.87 -128.33 REMARK 500 19 LYS A 31 -64.55 -98.54 REMARK 500 19 GLN A 34 48.21 -158.22 REMARK 500 19 ASN A 62 83.76 -158.41 REMARK 500 19 THR A 68 17.55 -145.01 REMARK 500 19 SER A 83 136.88 63.94 REMARK 500 20 SER A 3 -55.30 -154.35 REMARK 500 20 SER A 5 -62.57 -132.84 REMARK 500 20 SER A 6 -74.10 -44.62 REMARK 500 20 ASN A 23 31.96 -95.38 REMARK 500 20 GLN A 24 -53.87 -127.31 REMARK 500 20 MET A 30 85.53 -60.94 REMARK 500 20 GLN A 34 -35.94 172.71 REMARK 500 20 ILE A 51 -38.38 -39.84 REMARK 500 20 THR A 68 17.19 -145.54 REMARK 500 20 SER A 79 76.89 -101.32 REMARK 500 20 SER A 82 129.87 -173.46 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007020407.1 RELATED DB: TARGETDB
DBREF 1WIH A 8 78 UNP Q9D6S7 RRFM_MOUSE 116 186
SEQADV 1WIH GLY A 1 UNP Q9D6S7 CLONING ARTIFACT SEQADV 1WIH SER A 2 UNP Q9D6S7 CLONING ARTIFACT SEQADV 1WIH SER A 3 UNP Q9D6S7 CLONING ARTIFACT SEQADV 1WIH GLY A 4 UNP Q9D6S7 CLONING ARTIFACT SEQADV 1WIH SER A 5 UNP Q9D6S7 CLONING ARTIFACT SEQADV 1WIH SER A 6 UNP Q9D6S7 CLONING ARTIFACT SEQADV 1WIH GLY A 7 UNP Q9D6S7 CLONING ARTIFACT SEQADV 1WIH SER A 79 UNP Q9D6S7 CLONING ARTIFACT SEQADV 1WIH GLY A 80 UNP Q9D6S7 CLONING ARTIFACT SEQADV 1WIH PRO A 81 UNP Q9D6S7 CLONING ARTIFACT SEQADV 1WIH SER A 82 UNP Q9D6S7 CLONING ARTIFACT SEQADV 1WIH SER A 83 UNP Q9D6S7 CLONING ARTIFACT SEQADV 1WIH GLY A 84 UNP Q9D6S7 CLONING ARTIFACT
SEQRES 1 A 84 GLY SER SER GLY SER SER GLY LEU ASP HIS ILE THR VAL SEQRES 2 A 84 VAL THR ALA ASP GLY LYS VAL ALA LEU ASN GLN ILE GLY SEQRES 3 A 84 GLN ILE SER MET LYS SER PRO GLN VAL ILE LEU VAL ASN SEQRES 4 A 84 MET ALA SER PHE PRO GLU CYS THR ALA ALA ALA ILE LYS SEQRES 5 A 84 ALA ILE ARG GLU SER GLY MET ASN LEU ASN PRO GLU VAL SEQRES 6 A 84 GLU GLY THR LEU ILE ARG VAL PRO ILE PRO LYS VAL THR SEQRES 7 A 84 SER GLY PRO SER SER GLY
HELIX 1 1 LEU A 22 GLY A 26 1 5 HELIX 2 2 CYS A 46 GLU A 56 1 11
SHEET 1 A 2 THR A 12 THR A 15 0 SHEET 2 A 2 GLY A 18 ALA A 21 -1 O VAL A 20 N VAL A 13 SHEET 1 B 4 GLN A 27 SER A 32 0 SHEET 2 B 4 VAL A 35 ASN A 39 -1 O LEU A 37 N SER A 29 SHEET 3 B 4 LEU A 69 PRO A 73 -1 O VAL A 72 N ILE A 36 SHEET 4 B 4 GLU A 64 GLU A 66 -1 N GLU A 64 O ARG A 71
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000