1WI3 - Header Asymmetric Unit

HEADER DNA BINDING PROTEIN 28-MAY-04 1WI3

TITLE SOLUTION STRUCTURE OF THE HOMEODOMAIN OF KIAA1034 PROTEIN

COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-BINDING PROTEIN SATB2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HOMEODOMAIN; COMPND 5 SYNONYM: KIAA1034 PROTEIN, SPECIAL AT-RICH SEQUENCE- COMPND 6 BINDING PROTEIN 2, TWO CUT DOMAINS-CONTAINING HOMEODOMAIN COMPND 7 PROTEIN, SATB2; COMPND 8 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAZUSA CDNA FH00753; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040126-83; SOURCE 8 OTHER_DETAILS: CELL FREE SYNTHESIS

KEYWDS SATB2, HOMEODOMAIN, HELIX-TURN-HELIX, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS, KEYWDS 3 DNA BINDING PROTEIN

EXPDTA SOLUTION NMR

NUMMDL 20

AUTHOR K.IZUMI,M.YOSHIDA,F.HAYASHI,R.HATTA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)

REVDAT 2 24-FEB-09 1WI3 1 VERSN REVDAT 1 28-NOV-04 1WI3 0

JRNL AUTH K.IZUMI,M.YOSHIDA,F.HAYASHI,R.HATTA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE HOMEODOMAIN OF KIAA1034 JRNL TITL 2 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.7 REMARK 3 AUTHORS : GUENTERT,P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1WI3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-JUN-04. REMARK 100 THE RCSB ID CODE IS RCSB023602.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.09MM 13C,15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL REMARK 210 BUFFER; 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 2002045, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.893, REMARK 210 CYANA 1.0.7 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 129.28 179.42 REMARK 500 1 SER A 3 160.70 179.01 REMARK 500 1 SER A 5 135.04 -175.36 REMARK 500 1 ARG A 9 154.54 60.66 REMARK 500 1 ARG A 11 111.37 -176.47 REMARK 500 1 LEU A 16 -66.33 154.43 REMARK 500 1 GLU A 17 -83.34 -36.12 REMARK 500 1 ALA A 18 -59.96 -28.65 REMARK 500 1 ILE A 21 -75.98 -45.82 REMARK 500 1 LEU A 31 46.02 -144.76 REMARK 500 1 ALA A 43 -67.56 -98.77 REMARK 500 1 ASP A 46 22.30 81.14 REMARK 500 1 LYS A 64 -61.28 -155.93 REMARK 500 1 SER A 69 101.64 56.33 REMARK 500 2 SER A 3 96.94 62.45 REMARK 500 2 ARG A 9 97.20 51.07 REMARK 500 2 LEU A 16 -65.76 155.07 REMARK 500 2 GLU A 17 -83.38 -36.25 REMARK 500 2 ALA A 18 -63.18 -28.07 REMARK 500 2 TYR A 32 63.39 179.13 REMARK 500 2 ALA A 43 -68.60 -98.29 REMARK 500 2 ASP A 46 23.01 81.25 REMARK 500 2 HIS A 62 -74.93 -59.11 REMARK 500 2 HIS A 65 89.34 56.44 REMARK 500 2 SER A 70 122.23 178.74 REMARK 500 3 SER A 2 -60.72 -151.98 REMARK 500 3 SER A 3 161.44 65.00 REMARK 500 3 ILE A 14 119.48 61.65 REMARK 500 3 LEU A 16 -66.02 154.71 REMARK 500 3 GLU A 17 -83.32 -36.11 REMARK 500 3 ALA A 18 -60.92 -28.79 REMARK 500 3 LEU A 31 43.72 -146.84 REMARK 500 3 ALA A 43 -67.45 -98.59 REMARK 500 3 ASP A 46 21.17 81.23 REMARK 500 3 LYS A 64 159.21 68.05 REMARK 500 4 SER A 2 161.25 178.16 REMARK 500 4 SER A 5 -58.42 74.82 REMARK 500 4 SER A 6 164.75 -49.10 REMARK 500 4 LEU A 16 -71.34 158.14 REMARK 500 4 GLU A 17 -83.56 -35.32 REMARK 500 4 ALA A 18 -51.96 -28.99 REMARK 500 4 LEU A 19 -71.45 -52.42 REMARK 500 4 TYR A 32 63.09 -153.03 REMARK 500 4 ALA A 43 -67.18 -99.42 REMARK 500 4 ASP A 46 22.17 82.06 REMARK 500 4 HIS A 65 63.16 -170.34 REMARK 500 4 SER A 69 92.50 65.16 REMARK 500 5 SER A 2 90.08 50.65 REMARK 500 5 ARG A 9 85.35 43.53 REMARK 500 5 LEU A 16 -65.85 155.49 REMARK 500 5 GLU A 17 -83.39 -36.73 REMARK 500 5 ALA A 18 -59.96 -29.21 REMARK 500 5 LEU A 31 36.06 -141.84 REMARK 500 5 ALA A 43 -68.10 -96.74 REMARK 500 5 ASP A 46 23.48 82.09 REMARK 500 5 HIS A 62 78.26 -101.74 REMARK 500 5 LYS A 64 -71.53 -105.15 REMARK 500 5 SER A 69 -67.02 71.13 REMARK 500 5 SER A 70 94.91 52.78 REMARK 500 6 SER A 2 -59.01 -140.03 REMARK 500 6 SER A 5 -66.72 -138.34 REMARK 500 6 SER A 6 105.69 55.17 REMARK 500 6 ARG A 9 -65.72 -172.85 REMARK 500 6 LEU A 16 -66.10 154.69 REMARK 500 6 GLU A 17 -83.37 -36.08 REMARK 500 6 ALA A 18 -60.36 -28.71 REMARK 500 6 LEU A 31 42.14 -146.48 REMARK 500 6 ALA A 43 -67.45 -98.99 REMARK 500 6 ASP A 46 22.56 81.61 REMARK 500 6 HIS A 62 52.55 -98.85 REMARK 500 6 HIS A 65 -61.56 -156.40 REMARK 500 6 SER A 70 -58.49 -165.64 REMARK 500 7 SER A 2 -53.17 -175.60 REMARK 500 7 SER A 5 143.80 65.07 REMARK 500 7 SER A 6 109.91 -167.94 REMARK 500 7 ARG A 9 165.99 62.01 REMARK 500 7 LYS A 13 179.32 62.65 REMARK 500 7 LEU A 16 -67.10 154.81 REMARK 500 7 GLU A 17 -82.63 -36.61 REMARK 500 7 ALA A 18 -56.40 -29.82 REMARK 500 7 LEU A 31 47.49 -147.44 REMARK 500 7 TYR A 32 71.99 -150.25 REMARK 500 7 ALA A 43 -68.42 -98.98 REMARK 500 7 ASP A 46 22.08 80.90 REMARK 500 7 LYS A 54 -71.17 -41.49 REMARK 500 7 TYR A 61 -36.02 -39.75 REMARK 500 7 SER A 69 -60.84 -158.52 REMARK 500 8 SER A 5 102.10 64.93 REMARK 500 8 SER A 6 149.79 -179.00 REMARK 500 8 LYS A 13 159.37 61.00 REMARK 500 8 LEU A 16 -66.55 155.32 REMARK 500 8 GLU A 17 -83.33 -36.17 REMARK 500 8 ALA A 18 -58.97 -28.22 REMARK 500 8 TYR A 32 64.34 -171.17 REMARK 500 8 ALA A 43 -68.09 -97.08 REMARK 500 8 ASP A 46 23.60 81.90 REMARK 500 8 HIS A 62 -61.26 -91.17 REMARK 500 8 VAL A 63 94.93 -51.47 REMARK 500 8 LYS A 64 69.41 -111.65 REMARK 500 8 SER A 66 -60.15 -133.77 REMARK 500 8 SER A 69 93.10 -172.63 REMARK 500 8 SER A 70 113.29 64.79 REMARK 500 9 SER A 2 149.19 67.33 REMARK 500 9 SER A 3 147.29 63.18 REMARK 500 9 SER A 5 -58.95 -142.87 REMARK 500 9 SER A 6 156.48 63.57 REMARK 500 9 SER A 10 141.26 179.00 REMARK 500 9 ARG A 11 42.80 -175.90 REMARK 500 9 LYS A 13 33.82 -167.90 REMARK 500 9 LEU A 16 -66.12 155.28 REMARK 500 9 GLU A 17 -83.23 -36.38 REMARK 500 9 ALA A 18 -60.77 -28.34 REMARK 500 9 LEU A 31 41.81 -141.40 REMARK 500 9 ALA A 43 -67.27 -97.90 REMARK 500 9 ASP A 46 23.64 82.04 REMARK 500 9 HIS A 65 -58.07 -172.12 REMARK 500 10 SER A 2 -59.01 75.08 REMARK 500 10 SER A 6 161.47 68.39 REMARK 500 10 ARG A 11 129.27 67.05 REMARK 500 10 LYS A 13 -87.13 66.22 REMARK 500 10 LEU A 16 -69.43 161.09 REMARK 500 10 GLU A 17 -84.01 -36.46 REMARK 500 10 ALA A 18 -54.38 -26.29 REMARK 500 10 TYR A 32 63.65 -162.71 REMARK 500 10 ALA A 43 -67.81 -97.08 REMARK 500 10 ASP A 46 23.75 82.64 REMARK 500 10 LYS A 64 153.77 63.77 REMARK 500 10 HIS A 65 -65.06 76.32 REMARK 500 10 SER A 69 84.79 47.27 REMARK 500 11 SER A 5 110.34 64.02 REMARK 500 11 ARG A 9 -58.13 -137.93 REMARK 500 11 SER A 10 86.26 40.07 REMARK 500 11 ARG A 11 -51.63 -161.05 REMARK 500 11 LEU A 16 -67.06 153.94 REMARK 500 11 GLU A 17 -82.91 -36.16 REMARK 500 11 ALA A 18 -57.36 -29.27 REMARK 500 11 TYR A 32 62.88 -158.22 REMARK 500 11 ALA A 43 -66.78 -97.75 REMARK 500 11 LYS A 64 -68.35 -147.31 REMARK 500 11 SER A 70 86.00 47.23 REMARK 500 12 SER A 3 117.67 -169.20 REMARK 500 12 SER A 6 104.94 -170.47 REMARK 500 12 ARG A 11 93.89 51.87 REMARK 500 12 THR A 12 130.68 -179.14 REMARK 500 12 LYS A 13 115.32 62.14 REMARK 500 12 LEU A 16 -69.23 161.66 REMARK 500 12 GLU A 17 -84.19 -36.50 REMARK 500 12 ALA A 18 -53.08 -25.31 REMARK 500 12 LEU A 19 -71.54 -39.85 REMARK 500 12 VAL A 29 -89.45 -128.23 REMARK 500 12 LEU A 31 28.87 -143.52 REMARK 500 12 ALA A 43 -67.84 -98.30 REMARK 500 12 ASP A 46 23.54 81.01 REMARK 500 12 HIS A 62 74.46 -106.54 REMARK 500 12 LYS A 64 -63.99 -131.30 REMARK 500 13 SER A 2 -57.83 -173.66 REMARK 500 13 SER A 3 -56.43 -163.53 REMARK 500 13 SER A 5 -58.35 -160.95 REMARK 500 13 SER A 6 -59.18 -151.14 REMARK 500 13 ARG A 9 -68.98 69.61 REMARK 500 13 SER A 10 115.75 75.75 REMARK 500 13 LEU A 16 -66.21 155.20 REMARK 500 13 GLU A 17 -83.31 -36.16 REMARK 500 13 ALA A 18 -59.80 -29.01 REMARK 500 13 ALA A 43 -67.87 -97.98 REMARK 500 13 ASP A 46 23.39 82.02 REMARK 500 13 LYS A 64 -70.28 -117.38 REMARK 500 13 HIS A 65 75.60 -103.82 REMARK 500 13 SER A 70 152.97 60.05 REMARK 500 14 SER A 6 119.91 -177.28 REMARK 500 14 ILE A 14 120.58 61.40 REMARK 500 14 LEU A 16 -66.16 154.61 REMARK 500 14 GLU A 17 -83.48 -36.16 REMARK 500 14 ALA A 18 -60.55 -28.39 REMARK 500 14 LEU A 31 -86.68 -151.55 REMARK 500 14 TYR A 32 97.84 -37.52 REMARK 500 14 PRO A 33 -164.77 -75.02 REMARK 500 14 ALA A 43 -68.41 -97.61 REMARK 500 14 ASP A 46 22.35 81.66 REMARK 500 14 VAL A 63 154.94 -40.43 REMARK 500 14 SER A 66 131.79 -177.94 REMARK 500 14 SER A 69 -62.13 -101.90 REMARK 500 14 SER A 70 78.65 49.93 REMARK 500 15 SER A 6 171.59 62.05 REMARK 500 15 SER A 10 109.19 63.54 REMARK 500 15 LYS A 13 -77.97 -175.49 REMARK 500 15 LEU A 16 -71.66 155.20 REMARK 500 15 GLU A 17 -82.62 -35.58 REMARK 500 15 ALA A 18 -50.03 -29.30 REMARK 500 15 LEU A 19 -73.42 -57.06 REMARK 500 15 TYR A 32 63.40 -163.76 REMARK 500 15 ALA A 43 -67.05 -98.63 REMARK 500 15 ASP A 46 21.52 82.17 REMARK 500 15 HIS A 65 82.40 45.92 REMARK 500 16 SER A 2 -58.45 -135.13 REMARK 500 16 SER A 6 -60.73 -153.05 REMARK 500 16 THR A 12 165.44 53.96 REMARK 500 16 LEU A 16 -66.49 153.63 REMARK 500 16 GLU A 17 -83.09 -36.27 REMARK 500 16 ALA A 18 -58.04 -28.91 REMARK 500 16 LEU A 31 49.16 -144.03 REMARK 500 16 ALA A 43 -67.28 -100.47 REMARK 500 16 ASP A 46 21.31 82.30 REMARK 500 16 HIS A 65 166.27 68.29 REMARK 500 16 SER A 66 163.82 63.90 REMARK 500 17 LYS A 13 116.50 -174.48 REMARK 500 17 LEU A 16 -70.94 159.02 REMARK 500 17 GLU A 17 -83.42 -36.09 REMARK 500 17 ALA A 18 -47.88 -27.78 REMARK 500 17 LEU A 19 -75.61 -61.96 REMARK 500 17 TYR A 32 63.15 -162.38 REMARK 500 17 ALA A 43 -66.17 -99.28 REMARK 500 17 LYS A 64 -64.02 -121.46 REMARK 500 17 SER A 66 -58.06 -127.63 REMARK 500 18 SER A 2 127.39 63.92 REMARK 500 18 SER A 5 -57.42 -155.84 REMARK 500 18 SER A 10 148.24 -178.87 REMARK 500 18 THR A 12 72.46 38.84 REMARK 500 18 LEU A 16 -69.13 156.14 REMARK 500 18 GLU A 17 -82.85 -36.69 REMARK 500 18 ALA A 18 -49.76 -28.45 REMARK 500 18 LEU A 19 -74.70 -64.05 REMARK 500 18 TYR A 32 62.57 -160.04 REMARK 500 18 ALA A 43 -65.91 -96.63 REMARK 500 18 ASP A 46 19.23 80.48 REMARK 500 18 SER A 70 -58.99 178.17 REMARK 500 19 SER A 6 137.86 -178.23 REMARK 500 19 ARG A 9 90.35 -178.40 REMARK 500 19 SER A 15 -65.98 67.43 REMARK 500 19 LEU A 16 -73.17 -177.86 REMARK 500 19 GLU A 17 -81.62 -32.25 REMARK 500 19 LEU A 19 -74.89 -41.76 REMARK 500 19 LEU A 31 40.59 -147.75 REMARK 500 19 ALA A 43 -67.36 -98.28 REMARK 500 19 ASP A 46 24.09 82.05 REMARK 500 19 HIS A 62 -76.17 -53.64 REMARK 500 19 LYS A 64 -62.15 -126.55 REMARK 500 19 SER A 66 -68.03 69.90 REMARK 500 20 SER A 3 -58.31 -135.24 REMARK 500 20 ARG A 9 -52.89 -123.47 REMARK 500 20 ARG A 11 -76.62 66.14 REMARK 500 20 LEU A 16 -73.71 158.51 REMARK 500 20 GLU A 17 -82.79 -35.18 REMARK 500 20 ALA A 18 -45.79 -29.09 REMARK 500 20 LEU A 19 -77.29 -60.70 REMARK 500 20 TYR A 32 63.15 -162.78 REMARK 500 20 ALA A 43 -66.56 -97.25 REMARK 500 20 ASP A 46 20.15 81.79 REMARK 500 20 HIS A 62 -81.11 -63.95 REMARK 500 20 LYS A 64 -66.97 -170.69 REMARK 500 20 SER A 66 158.93 58.04 REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002001010.1 RELATED DB: TARGETDB

DBREF 1WI3 A 8 65 UNP Q9UPW6 SATB2_HUMAN 615 672

SEQADV 1WI3 GLY A 1 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WI3 SER A 2 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WI3 SER A 3 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WI3 GLY A 4 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WI3 SER A 5 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WI3 SER A 6 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WI3 GLY A 7 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WI3 SER A 66 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WI3 GLY A 67 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WI3 PRO A 68 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WI3 SER A 69 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WI3 SER A 70 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WI3 GLY A 71 UNP Q9UPW6 CLONING ARTIFACT

SEQRES 1 A 71 GLY SER SER GLY SER SER GLY PRO ARG SER ARG THR LYS SEQRES 2 A 71 ILE SER LEU GLU ALA LEU GLY ILE LEU GLN SER PHE ILE SEQRES 3 A 71 HIS ASP VAL GLY LEU TYR PRO ASP GLN GLU ALA ILE HIS SEQRES 4 A 71 THR LEU SER ALA GLN LEU ASP LEU PRO LYS HIS THR ILE SEQRES 5 A 71 ILE LYS PHE PHE GLN ASN GLN ARG TYR HIS VAL LYS HIS SEQRES 6 A 71 SER GLY PRO SER SER GLY

HELIX 1 1 LEU A 16 GLY A 30 1 15 HELIX 2 2 ASP A 34 LEU A 45 1 12 HELIX 3 3 PRO A 48 VAL A 63 1 16

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000